AT4G00850 : GRF1-interacting factor 3
Query Information
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AGICode AT4G00850
Description GRF1-interacting factor 3
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G00850 GRF1-interacting factor 3 GRF1-interacting factor 3 1 0.33 -0.32
2 AT1G68010 hydroxypyruvate reductase ATHPR1, hydroxypyruvate reductase 0.84 0.32 -0.35
3 AT4G28080 Tetratricopeptide repeat (TPR)-like superfamily protein 0.84 0.33 -0.32
4 AT2G04790 unknown protein; Has 45 Blast hits to 45 proteins in 15
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 43; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 0.83 0.31 -0.31
5 AT1G66970 SHV3-like 2 Glycerophosphodiester
phosphodiesterase (GDPD) like 1,
SHV3-like 2		 0.83 0.31 -0.33
6 AT3G25690 Hydroxyproline-rich glycoprotein family protein Arabidopsis thaliana CHLOROPLAST
UNUSUAL POSITIONING 1, CHLOROPLAST
UNUSUAL POSITIONING 1		 0.83 0.31 -0.31
7 AT2G20725 CAAX amino terminal protease family protein 0.81 0.32 -0.32
8 AT2G02870 Galactose oxidase/kelch repeat superfamily protein -0.81 0.34 -0.31
9 AT5G56630 phosphofructokinase 7 phosphofructokinase 7 -0.81 0.31 -0.33
10 AT1G53320 tubby like protein 7 tubby like protein 7, tubby like
protein 7		 -0.8 0.32 -0.32
11 AT3G55410 2-oxoglutarate dehydrogenase, E1 component -0.8 0.32 -0.32
12 AT1G65490 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G65486.1); Has 23 Blast hits to 23 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.79 0.31 -0.31
13 AT3G11090 LOB domain-containing protein 21 LOB domain-containing protein 21 0.79 0.31 -0.31
14 AT3G25130 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 17 plant structures; EXPRESSED
DURING: 9 growth stages; Has 3885 Blast hits to 2658
proteins in 280 species: Archae - 12; Bacteria - 208;
Metazoa - 970; Fungi - 222; Plants - 148; Viruses - 11;
Other Eukaryotes - 2314 (source: NCBI BLink).		 0.79 0.32 -0.31
15 AT5G11690 translocase inner membrane subunit 17-3 ARABIDOPSIS THALIANA TRANSLOCASE
INNER MEMBRANE SUBUNIT 17-3,
translocase inner membrane subunit
17-3		 0.79 0.29 -0.33
16 AT3G03950 evolutionarily conserved C-terminal region 1 evolutionarily conserved
C-terminal region 1		 -0.79 0.32 -0.32
17 AT1G22650 Plant neutral invertase family protein alkaline/neutral invertase D 0.78 0.29 -0.3
18 AT4G23460 Adaptin family protein -0.78 0.35 -0.32
19 AT5G02580 Plant protein 1589 of unknown function -0.78 0.32 -0.31
20 AT5G16910 cellulose-synthase like D2 ATCSLD2, cellulose-synthase like
D2		 -0.78 0.31 -0.3
21 AT2G42690 alpha/beta-Hydrolases superfamily protein 0.78 0.31 -0.34
22 AT1G32690 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 21 plant structures; EXPRESSED
DURING: 11 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G35200.1); Has 45 Blast
hits to 45 proteins in 8 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.78 0.31 -0.34
23 AT3G27880 Protein of unknown function (DUF1645) -0.78 0.32 -0.32
24 AT4G09350 Chaperone DnaJ-domain superfamily protein CHLORORESPIRATORY REDUCTION J,
NADH dehydrogenase-like complex T		 0.78 0.31 -0.31
25 AT3G52780 Purple acid phosphatases superfamily protein ATPAP20, PAP20 -0.77 0.32 -0.32
26 AT1G66230 myb domain protein 20 myb domain protein 20, myb domain
protein 20		 0.77 0.33 -0.29
27 AT5G55200 Co-chaperone GrpE family protein mitochondrial GrpE 1 -0.77 0.31 -0.33
28 AT2G36570 Leucine-rich repeat protein kinase family protein 0.77 0.33 -0.3
29 AT1G02000 UDP-D-glucuronate 4-epimerase 2 UDP-D-glucuronate 4-epimerase 2 -0.77 0.33 -0.29
30 AT1G61690 phosphoinositide binding -0.77 0.31 -0.32
31 AT5G38980 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 3 Blast hits to 3
proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.77 0.31 -0.33
32 AT3G17860 jasmonate-zim-domain protein 3 JASMONATE-INSENSITIVE 3,
jasmonate-zim-domain protein 3,
TIFY6B		 -0.77 0.31 -0.32
33 AT2G17570 Undecaprenyl pyrophosphate synthetase family protein -0.77 0.31 -0.32
34 AT1G72030 Acyl-CoA N-acyltransferases (NAT) superfamily protein 0.77 0.32 -0.32
35 AT4G29750 CRS1 / YhbY (CRM) domain-containing protein 0.76 0.31 -0.35
36 AT5G04950 nicotianamine synthase 1 ARABIDOPSIS THALIANA NICOTIANAMINE
SYNTHASE 1, nicotianamine synthase
1		 0.76 0.3 -0.31
37 AT1G23060 BEST Arabidopsis thaliana protein match is: TPX2 (targeting
protein for Xklp2) protein family (TAIR:AT1G70950.1); Has
449 Blast hits to 419 proteins in 98 species: Archae - 0;
Bacteria - 40; Metazoa - 139; Fungi - 21; Plants - 158;
Viruses - 3; Other Eukaryotes - 88 (source: NCBI BLink).		 -0.76 0.31 -0.32
38 AT5G55850 RPM1-interacting protein 4 (RIN4) family protein NOI -0.76 0.31 -0.31
39 AT1G67180 zinc finger (C3HC4-type RING finger) family protein / BRCT
domain-containing protein		 0.76 0.32 -0.3
40 AT1G68140 Protein of unknown function (DUF1644) -0.76 0.31 -0.31
41 AT4G16760 acyl-CoA oxidase 1 acyl-CoA oxidase 1, ATACX1 -0.76 0.33 -0.31
42 AT5G51640 Plant protein of unknown function (DUF828) TRICHOME BIREFRINGENCE-LIKE 17,
YELLOW-LEAF-SPECIFIC GENE 7		 -0.76 0.31 -0.33
43 AT1G45050 Ubiquitin-conjugating enzyme family protein ATUBC2-1, Arabidopsis thaliana
ubiquitin-conjugating enzyme 15		 -0.76 0.3 -0.34
44 AT2G01470 SEC12P-like 2 protein ATSEC12, SEC12P-like 2 protein -0.76 0.31 -0.33
45 AT3G11580 AP2/B3-like transcriptional factor family protein -0.75 0.34 -0.3
46 AT2G34930 disease resistance family protein / LRR family protein -0.75 0.31 -0.33
47 AT5G58310 methyl esterase 18 ARABIDOPSIS THALIANA METHYL
ESTERASE 18, methyl esterase 18		 0.75 0.31 -0.32
48 AT1G06420 unknown protein; Has 1017 Blast hits to 654 proteins in 124
species: Archae - 0; Bacteria - 39; Metazoa - 232; Fungi -
69; Plants - 40; Viruses - 0; Other Eukaryotes - 637
(source: NCBI BLink).		 0.75 0.32 -0.29
49 AT5G04170 Calcium-binding EF-hand family protein -0.75 0.33 -0.33
50 AT3G48890 membrane-associated progesterone binding protein 3 ARABIDOPSIS THALIANA
MEMBRANE-ASSOCIATED PROGESTERONE
BINDING PROTEIN 3, ATMP2,
membrane-associated progesterone
binding protein 3, MEMBRANE
STEROID BINDING PROTEIN 2		 -0.75 0.31 -0.31
51 AT1G13080 cytochrome P450, family 71, subfamily B, polypeptide 2 cytochrome P450, family 71,
subfamily B, polypeptide 2		 0.75 0.33 -0.31
52 AT3G06490 myb domain protein 108 myb domain protein 108,
BOTRYTIS-SUSCEPTIBLE1, myb domain
protein 108		 -0.75 0.33 -0.31
53 AT5G51570 SPFH/Band 7/PHB domain-containing membrane-associated
protein family		 -0.75 0.31 -0.31
54 AT4G28600 no pollen germination related 2 no pollen germination related 2 -0.75 0.32 -0.32
55 AT4G10140 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; EXPRESSED
IN: 24 plant structures; EXPRESSED DURING: 15 growth
stages; CONTAINS InterPro DOMAIN/s: Protein of unknown
function DUF2062 (InterPro:IPR018639); BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G33490.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 -0.75 0.33 -0.33
56 AT3G24200 FAD/NAD(P)-binding oxidoreductase family protein -0.75 0.3 -0.32
57 AT1G35910 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 trehalose-6-phosphate phosphatase
D		 -0.75 0.32 -0.33
58 AT1G09300 Metallopeptidase M24 family protein -0.75 0.3 -0.33
59 AT5G54430 Adenine nucleotide alpha hydrolases-like superfamily
protein		 ATPHOS32, PHOS32 -0.75 0.3 -0.32
60 AT1G28050 B-box type zinc finger protein with CCT domain -0.75 0.32 -0.31
61 AT4G15100 serine carboxypeptidase-like 30 serine carboxypeptidase-like 30 -0.74 0.32 -0.32
62 AT4G28910 novel interactor of JAZ novel interactor of JAZ -0.74 0.29 -0.33
63 AT5G03660 Family of unknown function (DUF662) -0.74 0.33 -0.33
64 AT4G11380 Adaptin family protein -0.74 0.32 -0.36
65 AT3G18070 beta glucosidase 43 beta glucosidase 43 0.74 0.33 -0.29
66 AT1G23780 F-box family protein -0.74 0.33 -0.33
67 AT1G62045 BEST Arabidopsis thaliana protein match is: ankyrin repeat
family protein (TAIR:AT1G11740.1); Has 26 Blast hits to 26
proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.74 0.29 -0.31
68 AT2G45800 GATA type zinc finger transcription factor family protein PLIM2a 0.74 0.31 -0.31
69 AT4G33090 aminopeptidase M1 aminopeptidase M1, AMINOPEPTIDASE
M1		 -0.74 0.3 -0.34
70 AT1G23310 glutamate:glyoxylate aminotransferase ALANINE-2-OXOGLUTARATE
AMINOTRANSFERASE 1,
GLUTAMATE:GLYOXYLATE
AMINOTRANSFERASE 1,
glutamate:glyoxylate
aminotransferase		 0.74 0.3 -0.33
71 AT3G47430 peroxin 11B peroxin 11B 0.74 0.33 -0.28
72 AT5G16960 Zinc-binding dehydrogenase family protein -0.74 0.33 -0.31
73 AT1G20110 RING/FYVE/PHD zinc finger superfamily protein -0.74 0.29 -0.3
74 AT2G43320 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.74 0.31 -0.33
75 AT4G15470 Bax inhibitor-1 family protein -0.73 0.31 -0.33
76 AT3G10370 FAD-dependent oxidoreductase family protein SUGAR-DEPENDENT 6 -0.73 0.34 -0.31
77 AT1G66340 Signal transduction histidine kinase, hybrid-type, ethylene
sensor		 AtETR1, ETHYLENE INSENSITIVE 1,
ETHYLENE RESPONSE, ETHYLENE
RESPONSE 1		 -0.73 0.29 -0.3
78 AT1G63010 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1)
domain-containing protein		 -0.73 0.3 -0.32
79 AT1G77510 PDI-like 1-2 PROTEIN DISULFIDE ISOMERASE 6,
PDI-like 1-2, PROTEIN DISULFIDE
ISOMERASE 6, PDI-like 1-2		 -0.73 0.33 -0.29
80 AT2G26920 Ubiquitin-associated/translation elongation factor EF1B
protein		 -0.73 0.31 -0.3
81 AT3G62600 DNAJ heat shock family protein ATERDJ3B, ERDJ3B -0.73 0.3 -0.31
82 AT5G16440 isopentenyl diphosphate isomerase 1 isopentenyl diphosphate isomerase
1		 -0.73 0.31 -0.31
83 AT5G19000 BTB-POZ and MATH domain 1 BTB-POZ AND MATH DOMAIN 1, BTB-POZ
and MATH domain 1		 -0.73 0.3 -0.32
84 AT4G17895 ubiquitin-specific protease 20 ubiquitin-specific protease 20 -0.73 0.32 -0.31
85 AT5G16840 binding partner of acd11 1 binding partner of acd11 1 -0.73 0.34 -0.32
86 AT2G30530 unknown protein; LOCATED IN: cellular_component unknown;
EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15
growth stages; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT5G01970.1); Has 5513 Blast hits to
872 proteins in 154 species: Archae - 0; Bacteria - 30;
Metazoa - 615; Fungi - 144; Plants - 149; Viruses - 12;
Other Eukaryotes - 4563 (source: NCBI BLink).		 -0.73 0.3 -0.3
87 AT3G12490 cystatin B ARABIDOPSIS THALIANA PHYTOCYSTATIN
6, cystatin B, cystatin B		 -0.73 0.33 -0.32
88 AT1G49520 SWIB complex BAF60b domain-containing protein -0.73 0.31 -0.29
89 AT1G53050 Protein kinase superfamily protein -0.72 0.31 -0.31
90 AT1G15130 Endosomal targeting BRO1-like domain-containing protein -0.72 0.3 -0.33
91 AT3G63220 Galactose oxidase/kelch repeat superfamily protein -0.72 0.34 -0.3
92 AT1G06010 unknown protein; Has 25 Blast hits to 25 proteins in 9
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.72 0.3 -0.3
93 AT3G56490 HIS triad family protein 3 HISTIDINE TRIAD NUCLEOTIDE-BINDING
1, HIS triad family protein 3		 -0.72 0.29 -0.32
94 AT5G58290 regulatory particle triple-A ATPase 3 regulatory particle triple-A
ATPase 3		 -0.72 0.27 -0.31
95 AT5G54800 glucose 6-phosphate/phosphate translocator 1 ARABIDOPSIS GLUCOSE
6-PHOSPHATE/PHOSPHATE TRANSLOCATOR
1, glucose 6-phosphate/phosphate
translocator 1		 -0.72 0.32 -0.32
96 AT3G21500 1-deoxy-D-xylulose 5-phosphate synthase 1 1-deoxy-D-xylulose 5-phosphate
synthase 1		 -0.72 0.31 -0.33
97 AT3G03050 cellulose synthase-like D3 CELLULOSE SYNTHASE LIKE D3,
cellulose synthase-like D3, KOJAK,
ROOT HAIR DEFECTIVE 7		 -0.72 0.3 -0.32
98 AT1G79680 WALL ASSOCIATED KINASE (WAK)-LIKE 10 ATWAKL10, WALL ASSOCIATED KINASE
(WAK)-LIKE 10		 -0.72 0.31 -0.32
99 AT3G15660 glutaredoxin 4 A. THALIANA GLUTAREDOXIN 4,
glutaredoxin 4		 -0.72 0.31 -0.29
100 AT5G49890 chloride channel C ATCLC-C, chloride channel C -0.72 0.32 -0.32
101 AT5G17490 RGA-like protein 3 AtRGL3, RGA-like protein 3 -0.72 0.3 -0.32
102 AT1G54090 exocyst subunit exo70 family protein D2 exocyst subunit exo70 family
protein D2, exocyst subunit exo70
family protein D2		 -0.72 0.31 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
103 C0067 Citramalic acid (S)-(+)-, (R)-(-)-Citramalate (S)-Citramalate; (R)-Citramalate - -0.86 0.43 -0.45 C0067