AT4G00450 : CENTER CITY
Query Information
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AGICode AT4G00450
Description RNA polymerase II transcription mediators
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G00450 RNA polymerase II transcription mediators CENTER CITY, CRYPTIC PRECOCIOUS 1 0.33 -0.31
2 AT4G30790 INVOLVED IN: autophagy; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; CONTAINS InterPro
DOMAIN/s: Autophagy-related protein 17
(InterPro:IPR007240), Autophagy-related protein 11
(InterPro:IPR019460); Has 8793 Blast hits to 6268 proteins
in 570 species: Archae - 89; Bacteria - 657; Metazoa -
4844; Fungi - 808; Plants - 441; Viruses - 15; Other
Eukaryotes - 1939 (source: NCBI BLink).		 0.76 0.31 -0.32
3 AT1G17440 Transcription initiation factor TFIID subunit A CYTOKININ-HYPERSENSITIVE 1,
ENHANCED ETHYLENE RESPONSE 4,
TBP-ASSOCIATED FACTOR 12B		 0.75 0.32 -0.32
4 AT3G01310 Phosphoglycerate mutase-like family protein 0.74 0.31 -0.3
5 AT1G54130 RELA/SPOT homolog 3 AT-RSH3, RELA/SPOT HOMOLOG 3,
RELA/SPOT homolog 3		 0.74 0.32 -0.32
6 AT1G55325 RNA polymerase II transcription mediators GRAND CENTRAL, MACCHI-BOU 2 0.73 0.32 -0.31
7 AT5G16520 unknown protein; Has 25 Blast hits to 25 proteins in 9
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.73 0.31 -0.35
8 AT4G00150 GRAS family transcription factor ARABIDOPSIS THALIANA HAIRY
MERISTEM 3, HAIRY MERISTEM 3, LOST
MERISTEMS 3		 0.72 0.31 -0.32
9 AT2G32090 Lactoylglutathione lyase / glyoxalase I family protein 0.72 0.32 -0.31
10 AT1G02080 transcription regulators 0.72 0.32 -0.33
11 AT5G57390 AINTEGUMENTA-like 5 AINTEGUMENTA-like 5, CHOTTO 1,
EMBRYOMAKER, PLETHORA 5		 0.72 0.32 -0.33
12 AT2G27950 Ring/U-Box superfamily protein 0.71 0.3 -0.33
13 AT3G18040 MAP kinase 9 MAP kinase 9 0.71 0.31 -0.3
14 AT2G44380 Cysteine/Histidine-rich C1 domain family protein -0.71 0.31 -0.31
15 AT3G26230 cytochrome P450, family 71, subfamily B, polypeptide 24 cytochrome P450, family 71,
subfamily B, polypeptide 24		 -0.71 0.32 -0.3
16 AT4G18800 RAB GTPase homolog A1D ATHSGBP, ATRAB11B, RAB GTPase
homolog A1D, RAB GTPase homolog
A1D		 -0.7 0.31 -0.3
17 AT1G59510 Carbohydrate-binding protein CF9 0.7 0.3 -0.32
18 AT4G24560 ubiquitin-specific protease 16 ubiquitin-specific protease 16 0.7 0.31 -0.3
19 AT5G65620 Zincin-like metalloproteases family protein 0.7 0.32 -0.3
20 AT4G36670 Major facilitator superfamily protein AtPLT6, AtPMT6, polyol transporter
6, polyol/monosaccharide
transporter 6		 -0.7 0.32 -0.33
21 AT5G43810 Stabilizer of iron transporter SufD / Polynucleotidyl
transferase		 ARGONAUTE 10, PINHEAD, ZWILLE 0.7 0.33 -0.32
22 AT5G16630 DNA repair protein Rad4 family ATRAD4, RAD4 0.7 0.3 -0.31
23 AT4G38600 HEAT repeat ;HECT-domain (ubiquitin-transferase) KAKTUS, UBIQUITIN-PROTEIN LIGASE 3 0.7 0.32 -0.32
24 AT4G34040 RING/U-box superfamily protein 0.69 0.32 -0.32
25 AT1G68020 UDP-Glycosyltransferase / trehalose-phosphatase family
protein		 ATTPS6, TREHALOSE -6-PHOSPHATASE
SYNTHASE S6		 0.69 0.31 -0.32
26 AT4G25110 metacaspase 2 metacaspase 2, metacaspase 1c,
metacaspase 2, metacaspase 1c		 -0.69 0.29 -0.28
27 AT3G50380 Protein of unknown function (DUF1162) 0.68 0.32 -0.31
28 AT4G34100 RING/U-box superfamily protein 0.68 0.31 -0.31
29 AT4G25170 Uncharacterised conserved protein (UCP012943) 0.68 0.3 -0.33
30 AT3G19170 presequence protease 1 presequence protease 1, ATZNMP,
presequence protease 1		 0.68 0.3 -0.3
31 AT1G30900 VACUOLAR SORTING RECEPTOR 6 binding protein of 80 kDa 3;3,
VACUOLAR SORTING RECEPTOR 3;3,
VACUOLAR SORTING RECEPTOR 6		 -0.68 0.33 -0.32
32 AT5G59410 Rab5-interacting family protein -0.68 0.32 -0.34
33 AT1G03210 Phenazine biosynthesis PhzC/PhzF protein -0.68 0.3 -0.31
34 AT5G62090 SEUSS-like 2 SEUSS-like 2 0.68 0.32 -0.31
35 AT2G39260 binding;RNA binding 0.68 0.29 -0.32
36 AT4G17140 pleckstrin homology (PH) domain-containing protein 0.67 0.33 -0.33
37 ATCG00530 CemA-like proton extrusion protein-related YCF10 0.67 0.33 -0.33
38 AT3G54670 Structural maintenance of chromosomes (SMC) family protein ATSMC1, STRUCTURAL MAINTENANCE OF
CHROMOSOMES 1, TITAN8		 0.67 0.31 -0.33
39 AT5G66320 GATA transcription factor 5 GATA transcription factor 5 0.67 0.31 -0.32
40 AT2G47980 sister-chromatid cohesion protein 3 SISTER-CHROMATID COHESION PROTEIN
3, sister-chromatid cohesion
protein 3		 0.67 0.3 -0.32
41 AT5G07290 MEI2-like 4 MEI2-like 4, MEI2-like 4 0.67 0.34 -0.3
42 AT3G06400 chromatin-remodeling protein 11 chromatin-remodeling protein 11 0.67 0.3 -0.31
43 AT5G19420 Regulator of chromosome condensation (RCC1) family with
FYVE zinc finger domain		 0.67 0.32 -0.32
44 AT1G68490 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G13390.2); Has 125 Blast
hits to 125 proteins in 18 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.67 0.33 -0.32
45 AT1G77750 Ribosomal protein S13/S18 family -0.67 0.31 -0.33
46 AT2G44970 alpha/beta-Hydrolases superfamily protein 0.66 0.33 -0.31
47 AT2G28290 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 CHROMATIN REMODELING COMPLEX
SUBUNIT R 3, SPLAYED		 0.66 0.31 -0.31
48 AT1G04300 TRAF-like superfamily protein 0.66 0.3 -0.33
49 AT1G03850 Glutaredoxin family protein glutaredoxin 13, glutaredoxin 13 -0.66 0.35 -0.33
50 AT5G48150 GRAS family transcription factor phytochrome a signal transduction
1		 0.66 0.33 -0.31
51 ATCG00065 ribosomal protein S12A RIBOSOMAL PROTEIN S12, ribosomal
protein S12A		 0.65 0.31 -0.32
52 AT3G09850 D111/G-patch domain-containing protein 0.65 0.31 -0.31
53 AT2G17930 Phosphatidylinositol 3- and 4-kinase family protein with
FAT domain		 0.65 0.31 -0.32
54 AT3G02885 GAST1 protein homolog 5 GAST1 protein homolog 5 -0.65 0.31 -0.31
55 AT2G27285 Coiled-coil domain-containing protein 55 (DUF2040) 0.65 0.3 -0.34
56 AT4G19420 Pectinacetylesterase family protein -0.65 0.31 -0.31
57 AT3G01670 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G01680.1); Has 121 Blast hits
to 111 proteins in 12 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 121; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 sieve element occlusion a 0.65 0.34 -0.32
58 AT1G80930 MIF4G domain-containing protein / MA3 domain-containing
protein		 0.65 0.32 -0.32
59 AT4G38350 Patched family protein 0.64 0.29 -0.31
60 AT4G37760 squalene epoxidase 3 squalene epoxidase 3 0.64 0.33 -0.31
61 AT3G22380 time for coffee TIME FOR COFFEE 0.64 0.31 -0.31
62 AT5G57130 Clp amino terminal domain-containing protein 0.64 0.33 -0.32
63 AT2G29190 pumilio 2 pumilio 2, pumilio 2 0.64 0.32 -0.32
64 AT5G28440 unknown protein 0.64 0.31 -0.31
65 AT1G07960 PDI-like 5-1 PDI-like 5-1, PDI-like 5-1 -0.64 0.29 -0.32
66 AT5G04240 Zinc finger (C2H2 type) family protein / transcription
factor jumonji (jmj) family protein		 EARLY FLOWERING 6 0.64 0.32 -0.29
67 AT5G23110 Zinc finger, C3HC4 type (RING finger) family protein 0.63 0.31 -0.31
68 AT2G31960 glucan synthase-like 3 glucan synthase-like 3, ATGSL3,
GSL03, glucan synthase-like 3		 0.63 0.33 -0.32
69 AT5G12350 Regulator of chromosome condensation (RCC1) family with
FYVE zinc finger domain		 0.63 0.3 -0.33
70 AT3G09000 proline-rich family protein 0.63 0.32 -0.33
71 AT1G80460 Actin-like ATPase superfamily protein GLI1, nonhost resistance to P. s.
phaseolicola 1		 -0.63 0.29 -0.31
72 AT2G25680 molybdate transporter 1 molybdate transporter 1 -0.63 0.33 -0.31
73 AT3G05510 Phospholipid/glycerol acyltransferase family protein 0.63 0.3 -0.31
74 AT1G55970 histone acetyltransferase of the CBP family 4 HAC04, histone acetyltransferase
of the CBP family 4, HISTONE
ACETYLTRANSFERASE OF THE CBP
FAMILY 6, HISTONE
ACETYLTRANSFERASE OF THE GNAT/MYST
SUPERFAMILY 04, HISTONE
ACETYLTRANSFERASE OF THE GNAT/MYST
SUPERFAMILY 4		 0.63 0.34 -0.33
75 AT5G05990 Mitochondrial glycoprotein family protein -0.63 0.31 -0.32
76 AT1G13910 Leucine-rich repeat (LRR) family protein 0.63 0.3 -0.3
77 AT2G33600 NAD(P)-binding Rossmann-fold superfamily protein -0.62 0.34 -0.32
78 AT5G14540 Protein of unknown function (DUF1421) 0.62 0.34 -0.32
79 AT5G64090 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: plasma membrane;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: Hyccin
(InterPro:IPR018619); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G21050.1); Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 0.62 0.3 -0.31
80 AT5G64000 Inositol monophosphatase family protein ATSAL2, SAL2 -0.62 0.31 -0.3
81 AT1G32490 RNA helicase family protein EMBRYO DEFECTIVE 2733, ENHANCED
SILENCING PHENOTYPE 3		 0.62 0.32 -0.3
82 AT1G60860 ARF-GAP domain 2 ARF-GAP domain 2 0.62 0.34 -0.32
83 AT3G14840 Leucine-rich repeat transmembrane protein kinase -0.62 0.33 -0.31
84 AT1G58230 binding 0.62 0.31 -0.32
85 AT1G55510 branched-chain alpha-keto acid decarboxylase E1 beta
subunit		 branched-chain alpha-keto acid
decarboxylase E1 beta subunit		 0.62 0.32 -0.31
86 AT1G20770 unknown protein; Has 59 Blast hits to 59 proteins in 24
species: Archae - 0; Bacteria - 0; Metazoa - 26; Fungi - 4;
Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.62 0.31 -0.33
87 AT1G59850 ARM repeat superfamily protein 0.62 0.32 -0.31
88 AT5G15240 Transmembrane amino acid transporter family protein 0.62 0.31 -0.29
89 AT5G20840 Phosphoinositide phosphatase family protein 0.62 0.33 -0.3
90 AT4G25580 CAP160 protein 0.62 0.31 -0.32
91 ATCG00340 Photosystem I, PsaA/PsaB protein PSAB 0.62 0.31 -0.31
92 AT1G03060 Beige/BEACH domain ;WD domain, G-beta repeat protein SPIRRIG 0.62 0.32 -0.31
93 AT5G38690 Zinc-finger domain of monoamine-oxidase A repressor R1
protein		 -0.62 0.3 -0.29
94 AT5G60950 COBRA-like protein 5 precursor COBRA-like protein 5 precursor -0.61 0.3 -0.3
95 AT3G14310 pectin methylesterase 3 pectin methylesterase 3, pectin
methylesterase 3		 -0.61 0.31 -0.3
96 AT1G62790 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.61 0.34 -0.33
97 AT1G79400 cation/H+ exchanger 2 cation/H+ exchanger 2, cation/H+
exchanger 2		 -0.61 0.32 -0.34
98 AT1G74030 enolase 1 enolase 1 -0.61 0.33 -0.3
99 AT1G51790 Leucine-rich repeat protein kinase family protein -0.61 0.32 -0.33
100 AT5G55780 Cysteine/Histidine-rich C1 domain family protein -0.6 0.32 -0.32
101 AT2G13810 AGD2-like defense response protein 1 AGD2-like defense response protein
1, eds two suppressor 5		 -0.6 0.32 -0.31
102 AT1G15790 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G15780.1); Has 170 Blast hits
to 94 proteins in 14 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 170; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.6 0.33 -0.31
103 AT2G24390 AIG2-like (avirulence induced gene) family protein -0.6 0.31 -0.31
104 AT4G17070 peptidyl-prolyl cis-trans isomerases -0.6 0.31 -0.31
105 AT1G20050 C-8,7 sterol isomerase HYDRA1 -0.59 0.32 -0.31
106 AT2G38870 Serine protease inhibitor, potato inhibitor I-type family
protein		 -0.59 0.33 -0.31
107 AT3G58180 ARM repeat superfamily protein -0.59 0.29 -0.33
108 AT1G75750 GAST1 protein homolog 1 GAST1 protein homolog 1 -0.59 0.31 -0.3
109 AT1G13950 eukaryotic elongation factor 5A-1 EUKARYOTIC ELONGATION FACTOR 5A-1,
EIF-5A, EUKARYOTIC ELONGATION
FACTOR 5A, eukaryotic elongation
factor 5A-1		 -0.59 0.31 -0.33
110 AT5G20050 Protein kinase superfamily protein -0.59 0.3 -0.31
111 AT1G53680 glutathione S-transferase TAU 28 glutathione S-transferase TAU 28,
glutathione S-transferase TAU 28		 -0.58 0.31 -0.33
112 AT5G59990 CCT motif family protein -0.58 0.32 -0.33
113 AT4G39756 Galactose oxidase/kelch repeat superfamily protein -0.58 0.31 -0.3
114 AT1G10340 Ankyrin repeat family protein -0.58 0.32 -0.31
115 AT4G22790 MATE efflux family protein -0.58 0.31 -0.32
116 AT3G06710 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; BEST Arabidopsis thaliana protein match is:
RING/FYVE/PHD zinc finger superfamily protein
(TAIR:AT4G32670.1); Has 15 Blast hits to 15 proteins in 3
species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0;
Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.58 0.33 -0.33
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
117 C0074 Cystine L-Cystine L-Cystine protein precursor 0.78 0.44 -0.44 C0074
118 C0258 Tryptophan amide (NH3+) D,L-Tryptophan amide (NH3+) - - 0.75 0.42 -0.46
119 C0086 Disinapylspermidine - - - 0.69 0.44 -0.43
120 C0144 Maltose D-Maltose α-Maltose starch degradation II 0.68 0.42 -0.45 C0144
121 C0214 PR_MST_2412.1 - - - 0.68 0.45 -0.43
122 C0001 α-Linolenic acid - (9,12,15)-Linolenate traumatin and (Z)-3-hexen-1-yl acetate biosynthesis,
poly-hydroxy fatty acids biosynthesis,
jasmonic acid biosynthesis 		0.67 0.46 -0.45 C0001
123 C0233 Sinapinic acid - cis-Sinapinate; Sinapate ferulate and sinapate biosynthesis,
sinapate ester biosynthesis,
free phenylpropanoid acid biosynthesis 		0.64 0.42 -0.43 C0233
124 C0089 Fortunellin - - - 0.64 0.45 -0.47