AT4G00416 : methyl-CPG-binding domain 3
Query Information
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AGICode AT4G00416
Description methyl-CPG-binding domain 3
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G00416 methyl-CPG-binding domain 3 methyl-CPG-binding domain 3 1 0.31 -0.3
2 AT3G62700 multidrug resistance-associated protein 10 ATP-binding cassette C14,
multidrug resistance-associated
protein 10, multidrug
resistance-associated protein 10		 -0.78 0.32 -0.31
3 AT4G20480 Putative endonuclease or glycosyl hydrolase -0.76 0.31 -0.31
4 AT1G07250 UDP-glucosyl transferase 71C4 UDP-glucosyl transferase 71C4 -0.74 0.34 -0.33
5 AT2G22260 oxidoreductase, 2OG-Fe(II) oxygenase family protein 0.73 0.32 -0.31
6 AT1G21670 LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN:
23 plant structures; EXPRESSED DURING: 14 growth stages;
CONTAINS InterPro DOMAIN/s: WD40-like Beta Propeller
(InterPro:IPR011659), Six-bladed beta-propeller, TolB-like
(InterPro:IPR011042); BEST Arabidopsis thaliana protein
match is: DPP6 N-terminal domain-like protein
(TAIR:AT1G21680.1); Has 8461 Blast hits to 5060 proteins in
1257 species: Archae - 79; Bacteria - 5567; Metazoa - 37;
Fungi - 70; Plants - 117; Viruses - 0; Other Eukaryotes -
2591 (source: NCBI BLink).		 -0.72 0.31 -0.32
7 AT5G28630 glycine-rich protein 0.71 0.3 -0.32
8 AT5G58380 SOS3-interacting protein 1 CBL-INTERACTING PROTEIN KINASE 10,
PKS2, SOS3-interacting protein 1,
SNF1-RELATED PROTEIN KINASE 3.8		 -0.71 0.32 -0.3
9 AT1G47710 Serine protease inhibitor (SERPIN) family protein -0.71 0.33 -0.29
10 AT5G27200 acyl carrier protein 5 acyl carrier protein 5 0.71 0.29 -0.31
11 AT5G09620 Octicosapeptide/Phox/Bem1p family protein -0.7 0.34 -0.37
12 AT5G28470 Major facilitator superfamily protein 0.7 0.31 -0.3
13 AT5G37450 Leucine-rich repeat protein kinase family protein 0.7 0.31 -0.33
14 AT3G26940 Protein kinase superfamily protein CONSTITUTIVE DIFFERENTIAL GROWTH 1 0.7 0.3 -0.33
15 AT3G10600 cationic amino acid transporter 7 cationic amino acid transporter 7 0.69 0.31 -0.33
16 AT3G11110 RING/U-box superfamily protein 0.69 0.28 -0.35
17 AT1G20693 high mobility group B2 HIGH MOBILITY GROUP BETA 1, high
mobility group B2,
NUCLEOSOME/CHROMATIN ASSEMBLY
FACTOR GROUP D 02,
NUCLEOSOME/CHROMATIN ASSEMBLY
FACTOR GROUP D 2		 -0.68 0.33 -0.32
18 AT5G39570 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: cytosol, nucleus;
EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14
growth stages; BEST Arabidopsis thaliana protein match is:
glycine-rich protein (TAIR:AT3G29075.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.68 0.36 -0.31
19 AT2G44210 Protein of Unknown Function (DUF239) 0.68 0.32 -0.33
20 AT2G31955 cofactor of nitrate reductase and xanthine dehydrogenase 2 cofactor of nitrate reductase and
xanthine dehydrogenase 2		 -0.68 0.31 -0.3
21 AT3G15730 phospholipase D alpha 1 PLD, phospholipase D alpha 1 -0.68 0.33 -0.32
22 AT2G20480 unknown protein; Has 19 Blast hits to 19 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.67 0.33 -0.31
23 AT3G60910 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.66 0.3 -0.31
24 AT2G41900 CCCH-type zinc finger protein with ARM repeat domain OXIDATIVE STRESS 2 -0.66 0.31 -0.31
25 AT5G07290 MEI2-like 4 MEI2-like 4, MEI2-like 4 -0.65 0.32 -0.3
26 AT1G56300 Chaperone DnaJ-domain superfamily protein -0.65 0.34 -0.31
27 AT2G29080 FTSH protease 3 FTSH protease 3 -0.64 0.31 -0.31
28 AT1G80060 Ubiquitin-like superfamily protein 0.64 0.32 -0.35
29 AT2G02960 RING/FYVE/PHD zinc finger superfamily protein 0.64 0.3 -0.31
30 AT5G40850 urophorphyrin methylase 1 urophorphyrin methylase 1 0.64 0.31 -0.29
31 AT3G19290 ABRE binding factor 4 ABRE binding factor 4,
ABA-RESPONSIVE ELEMENT BINDING
PROTEIN 2		 -0.64 0.3 -0.31
32 AT5G42900 cold regulated gene 27 cold regulated gene 27 -0.63 0.32 -0.31
33 AT3G45940 Glycosyl hydrolases family 31 protein 0.63 0.31 -0.34
34 AT1G49720 abscisic acid responsive element-binding factor 1 abscisic acid responsive
element-binding factor 1		 -0.63 0.32 -0.32
35 AT3G01690 alpha/beta-Hydrolases superfamily protein 0.63 0.32 -0.33
36 AT1G20450 Dehydrin family protein EARLY RESPONSIVE TO DEHYDRATION
10, LOW TEMPERATURE INDUCED 29,
LOW TEMPERATURE INDUCED 45		 -0.63 0.32 -0.31
37 AT4G23630 VIRB2-interacting protein 1 VIRB2-interacting protein 1,
Reticulan like protein B1		 -0.62 0.3 -0.33
38 AT1G10730 Clathrin adaptor complexes medium subunit family protein -0.62 0.31 -0.32
39 AT1G32370 tobamovirus multiplication 2B tobamovirus multiplication 2B,
TTM1		 0.62 0.31 -0.34
40 AT4G22270 Protein of unknown function (DUF3537) ARABIDOPSIS MEMBRANE RELATED
BIGGER1, MEMBRANE RELATED BIGGER1		 -0.62 0.31 -0.29
41 AT2G34850 NAD(P)-binding Rossmann-fold superfamily protein maternal effect embryo arrest 25 -0.62 0.3 -0.31
42 AT1G54450 Calcium-binding EF-hand family protein 0.62 0.33 -0.3
43 AT2G16890 UDP-Glycosyltransferase superfamily protein -0.62 0.32 -0.29
44 AT3G28960 Transmembrane amino acid transporter family protein 0.61 0.32 -0.32
45 AT2G17730 NEP-interacting protein 2 NEP-interacting protein 2 -0.61 0.32 -0.31
46 AT1G01650 SIGNAL PEPTIDE PEPTIDASE-LIKE 4 ARABIDOPSIS THALIANA SIGNAL
PEPTIDE PEPTIDASE-LIKE 4, SIGNAL
PEPTIDE PEPTIDASE-LIKE 4		 -0.61 0.3 -0.3
47 AT5G23670 long chain base2 long chain base2 0.61 0.34 -0.32
48 AT5G11870 Alkaline phytoceramidase (aPHC) 0.61 0.33 -0.3
49 AT4G13710 Pectin lyase-like superfamily protein 0.61 0.31 -0.29
50 AT5G23890 LOCATED IN: mitochondrion, chloroplast thylakoid membrane,
chloroplast, plastid, chloroplast envelope; EXPRESSED IN:
24 plant structures; EXPRESSED DURING: 14 growth stages;
CONTAINS InterPro DOMAIN/s: S-layer homology domain
(InterPro:IPR001119); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G52410.2); Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 -0.61 0.32 -0.3
51 AT3G19840 pre-mRNA-processing protein 40C pre-mRNA-processing protein 40C,
pre-mRNA-processing protein 40C		 -0.61 0.34 -0.3
52 AT4G17550 Major facilitator superfamily protein glycerol-3-phosphate permease 4,
glycerol-3-phosphate permease 4		 -0.61 0.32 -0.32
53 AT1G68500 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G25422.1); Has 16 Blast hits
to 16 proteins in 6 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.61 0.33 -0.31
54 AT2G37040 PHE ammonia lyase 1 ATPAL1, PHE ammonia lyase 1 -0.6 0.31 -0.31
55 AT3G63360 defensin-related 0.6 0.32 -0.32
56 AT1G21790 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing
protein		 -0.6 0.34 -0.33
57 AT5G52580 RabGAP/TBC domain-containing protein -0.6 0.31 -0.32
58 AT3G45600 tetraspanin3 tetraspanin3 -0.6 0.31 -0.33
59 AT1G08730 Myosin family protein with Dil domain MYOSIN XI C, XIC 0.6 0.33 -0.32
60 AT2G23640 Reticulan like protein B13 Reticulan like protein B13 -0.6 0.29 -0.31
61 AT5G42290 transcription activator-related -0.6 0.32 -0.32
62 AT5G28230 pseudogene, similar to
glucose-6-phosphate/phosphate-translocator precursor,
contains similarity to
glucose-6-phosphate/phosphate-translocator precursors;
blastp match of 78% identity and 1.6e-75 P-value to
GP|2997591|gb|AAC08525.1||AF020814
glucose-6-phosphate/phosphate-translocator precursor {Pisum
sativum}		 0.6 0.32 -0.29
63 AT4G18650 transcription factor-related -0.6 0.31 -0.34
64 AT5G06830 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF773 (InterPro:IPR008491); Has 365 Blast
hits to 359 proteins in 109 species: Archae - 9; Bacteria -
13; Metazoa - 209; Fungi - 7; Plants - 47; Viruses - 0;
Other Eukaryotes - 80 (source: NCBI BLink).		 -0.6 0.29 -0.31
65 AT2G20350 Integrase-type DNA-binding superfamily protein -0.6 0.31 -0.3
66 AT5G42950 GYF domain-containing protein -0.6 0.31 -0.33
67 AT1G01470 Late embryogenesis abundant protein LATE EMBRYOGENESIS ABUNDANT 14,
LIGHT STRESS-REGULATED 3		 -0.6 0.32 -0.32
68 AT1G25330 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 CESTA, HALF FILLED 0.6 0.3 -0.34
69 AT1G20920 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.6 0.33 -0.32
70 AT3G20910 nuclear factor Y, subunit A9 nuclear factor Y, subunit A9 -0.6 0.32 -0.31
71 AT3G52360 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: response to karrikin; LOCATED IN: endomembrane
system; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 14 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G35850.1); Has 34 Blast
hits to 34 proteins in 10 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.59 0.31 -0.29
72 AT5G40450 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, plasma membrane; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 13 growth stages; Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.59 0.32 -0.32
73 AT4G03990 transposable element gene 0.59 0.29 -0.32
74 AT1G16570 UDP-Glycosyltransferase superfamily protein 0.59 0.32 -0.31
75 AT4G36350 purple acid phosphatase 25 ARABIDOPSIS THALIANA PURPLE ACID
PHOSPHATASE 25, purple acid
phosphatase 25		 0.59 0.32 -0.31
76 AT3G51550 Malectin/receptor-like protein kinase family protein FERONIA -0.59 0.3 -0.3
77 AT3G19160 ATP/ADP isopentenyltransferases ATP/ADP isopentenyltransferases,
ATP/ADP isopentenyltransferases,
isopentenyltransferase 8, PGA22		 -0.59 0.32 -0.31
78 AT4G40010 SNF1-related protein kinase 2.7 SUCROSE NONFERMENTING 1-RELATED
PROTEIN KINASE 2-7, SNF1-related
protein kinase 2.7, SRK2F		 -0.59 0.3 -0.32
79 AT1G02330 CONTAINS InterPro DOMAIN/s: Hepatocellular
carcinoma-associated antigen 59 (InterPro:IPR010756); Has
1239 Blast hits to 998 proteins in 204 species: Archae - 4;
Bacteria - 71; Metazoa - 421; Fungi - 109; Plants - 87;
Viruses - 5; Other Eukaryotes - 542 (source: NCBI BLink).		 -0.59 0.31 -0.33
80 AT1G22500 RING/U-box superfamily protein Arabidopsis thaliana Arabidopsis
toxicos en levadura 15,
Arabidopsis toxicos en levadura 15		 0.59 0.32 -0.32
81 AT2G17900 SET domain group 37 ASH1-related 1, SET domain group
37		 0.59 0.3 -0.32
82 AT1G27630 cyclin T 1;3 cyclin T 1;3 -0.59 0.31 -0.32
83 AT5G64170 dentin sialophosphoprotein-related -0.59 0.34 -0.31
84 AT2G23120 Late embryogenesis abundant protein, group 6 -0.59 0.35 -0.31
85 AT1G65220 ARM repeat superfamily protein -0.59 0.34 -0.32
86 AT3G01570 Oleosin family protein -0.59 0.31 -0.3
87 AT4G18340 Glycosyl hydrolase superfamily protein 0.59 0.31 -0.29
88 AT3G09020 alpha 1,4-glycosyltransferase family protein 0.58 0.36 -0.32
89 AT3G16540 DegP protease 11 DegP protease 11 0.58 0.31 -0.32
90 AT1G13930 Involved in response to salt stress. Knockout mutants are
hypersensitive to salt stress.		 -0.58 0.33 -0.33
91 AT5G67320 WD-40 repeat family protein high expression of osmotically
responsive genes 15		 -0.58 0.34 -0.29
92 AT4G31680 Transcriptional factor B3 family protein 0.58 0.32 -0.31
93 AT2G40930 ubiquitin-specific protease 5 ATUBP5, PIGMENT DEFECTIVE EMBRYO
323, ubiquitin-specific protease 5		 -0.58 0.3 -0.31
94 AT3G55190 alpha/beta-Hydrolases superfamily protein 0.58 0.32 -0.31
95 AT1G35430 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G09170.1); Has 23 Blast
hits to 23 proteins in 5 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.58 0.33 -0.32
96 AT2G14420 transposable element gene 0.58 0.31 -0.33
97 AT3G05510 Phospholipid/glycerol acyltransferase family protein -0.58 0.32 -0.31
98 AT1G13740 ABI five binding protein 2 ABI five binding protein 2 -0.58 0.28 -0.3
99 AT5G39720 avirulence induced gene 2 like protein avirulence induced gene 2 like
protein		 -0.58 0.33 -0.3
100 AT1G27461 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.58 0.3 -0.32
101 AT5G51840 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.57 0.31 -0.31
102 AT5G56920 Cystatin/monellin superfamily protein 0.57 0.3 -0.31
103 AT5G51470 Auxin-responsive GH3 family protein 0.57 0.32 -0.31
104 AT5G34790 transposable element gene 0.57 0.34 -0.3
105 AT3G06600 unknown protein; Has 14 Blast hits to 14 proteins in 5
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.57 0.34 -0.32
106 AT3G55960 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 0.57 0.32 -0.3
107 AT1G72740 Homeodomain-like/winged-helix DNA-binding family protein 0.57 0.29 -0.3
108 AT5G06170 sucrose-proton symporter 9 sucrose-proton symporter 9,
sucrose-proton symporter 9		 0.57 0.32 -0.31
109 AT4G31020 alpha/beta-Hydrolases superfamily protein 0.56 0.31 -0.3
110 AT1G20690 SWI-SNF-related chromatin binding protein 0.56 0.3 -0.31
111 AT1G08960 cation exchanger 11 CATION EXCHANGER 11, Arabidopsis
thaliana cation calcium exchanger
5, cation exchanger 11, cation
calcium exchanger 5		 0.56 0.3 -0.31
112 AT4G08880 transposable element gene 0.55 0.32 -0.32