AT4G00170 : -
Query Information
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AGICode AT4G00170
Description Plant VAMP (vesicle-associated membrane protein) family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G00170 Plant VAMP (vesicle-associated membrane protein) family
protein		 1 0.31 -0.33
2 AT5G54970 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G26960.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 0.84 0.31 -0.32
3 AT5G03300 adenosine kinase 2 adenosine kinase 2 0.84 0.32 -0.32
4 AT2G33845 Nucleic acid-binding, OB-fold-like protein 0.83 0.33 -0.31
5 AT4G09720 RAB GTPase homolog G3A RAB GTPase homolog G3A, RAB GTPase
homolog G3A		 0.83 0.34 -0.31
6 AT3G53890 Ribosomal protein S21e 0.82 0.31 -0.32
7 AT4G18040 eukaryotic translation initiation factor 4E ARABIDOPSIS THALIANA EUKARYOTIC
TRANSLATION INITATION FACTOR 4E1,
CUCUMOVIRUS MULTIPLICATION 1,
eukaryotic translation initiation
factor 4E, eukaryotic translation
Initiation Factor 4E1		 0.82 0.3 -0.33
8 AT2G46170 Reticulon family protein 0.82 0.33 -0.32
9 AT3G09820 adenosine kinase 1 adenosine kinase 1, ATADK1 0.81 0.31 -0.32
10 AT1G75560 zinc knuckle (CCHC-type) family protein 0.81 0.33 -0.31
11 AT1G09330 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
integral to membrane; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF846, eukaryotic
(InterPro:IPR008564); Has 518 Blast hits to 518 proteins in
206 species: Archae - 0; Bacteria - 0; Metazoa - 193; Fungi
- 145; Plants - 73; Viruses - 0; Other Eukaryotes - 107
(source: NCBI BLink).		 0.81 0.32 -0.33
12 AT3G07910 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
Reactive oxygen species modulator 1 (InterPro:IPR018450);
Has 192 Blast hits to 192 proteins in 80 species: Archae -
0; Bacteria - 0; Metazoa - 139; Fungi - 6; Plants - 39;
Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).		 0.8 0.31 -0.31
13 AT4G35490 mitochondrial ribosomal protein L11 mitochondrial ribosomal protein
L11		 0.8 0.34 -0.29
14 AT4G09320 Nucleoside diphosphate kinase family protein NDPK1 0.8 0.34 -0.32
15 AT1G14980 chaperonin 10 chaperonin 10 0.8 0.32 -0.31
16 AT2G21290 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 63 Blast hits to 63 proteins
in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.8 0.32 -0.3
17 AT3G27080 translocase of outer membrane 20 kDa subunit 3 translocase of outer membrane 20
kDa subunit 3		 0.8 0.32 -0.32
18 AT1G54770 Fcf2 pre-rRNA processing protein 0.79 0.32 -0.31
19 AT3G07230 wound-responsive protein-related 0.79 0.32 -0.32
20 AT3G46830 RAB GTPase homolog A2C ARABIDOPSIS RAB GTPASE HOMOLOG
A2C, ATRAB11A, RAB GTPase homolog
A2C, RAB GTPASE HOMOLOG A2C, RAB
GTPase homolog A2C		 0.79 0.31 -0.32
21 AT5G65270 RAB GTPase homolog A4A RAB GTPase homolog A4A, RAB GTPase
homolog A4A		 0.79 0.33 -0.33
22 AT1G66070 Translation initiation factor eIF3 subunit 0.78 0.32 -0.31
23 AT1G14810 semialdehyde dehydrogenase family protein 0.78 0.3 -0.33
24 AT5G58230 Transducin/WD40 repeat-like superfamily protein ARABIDOPSIS MULTICOPY SUPRESSOR OF
IRA1, MATERNAL EFFECT EMBRYO
ARREST 70, MULTICOPY SUPRESSOR OF
IRA1		 0.78 0.33 -0.33
25 AT2G43640 Signal recognition particle, SRP9/SRP14 subunit 0.78 0.34 -0.31
26 AT3G18165 modifier of snc1,4 Modifier of snc1,4 0.78 0.3 -0.3
27 AT5G14040 phosphate transporter 3;1 phosphate transporter 3;1 0.78 0.31 -0.32
28 AT1G04690 potassium channel beta subunit 1 potassium channel beta subunit 1,
KV-BETA1		 0.78 0.31 -0.32
29 AT5G40770 prohibitin 3 prohibitin 3, prohibitin 3 0.78 0.32 -0.3
30 AT1G23490 ADP-ribosylation factor 1 ADP-ribosylation factor 1,
ADP-RIBOSYLATION FACTOR,
ADP-ribosylation factor 1,
ADP-RIBOSYLATION FACTOR 1A		 0.78 0.33 -0.31
31 AT4G14420 HR-like lesion-inducing protein-related 0.77 0.32 -0.33
32 AT5G05010 clathrin adaptor complexes medium subunit family protein 0.77 0.32 -0.32
33 AT1G26340 cytochrome B5 isoform A ARABIDOPSIS CYTOCHROME B5 ISOFORM
A, B5 #6, cytochrome B5 isoform A		 0.77 0.34 -0.31
34 AT2G40420 Transmembrane amino acid transporter family protein -0.76 0.32 -0.3
35 AT3G53340 nuclear factor Y, subunit B10 nuclear factor Y, subunit B10 0.76 0.33 -0.29
36 AT2G04520 Nucleic acid-binding, OB-fold-like protein 0.76 0.3 -0.3
37 AT4G39920 C-CAP/cofactor C-like domain-containing protein PORCINO, TUBULIN-FOLDING COFACTOR
C		 0.76 0.32 -0.31
38 AT2G31710 Vacuolar ATPase assembly integral membrane protein
VMA21-like domain		 0.75 0.31 -0.32
39 AT3G55620 Translation initiation factor IF6 eukaryotic initiation facor 6A,
embryo defective 1624		 0.75 0.31 -0.33
40 AT3G23640 heteroglycan glucosidase 1 heteroglycan glucosidase 1 -0.75 0.3 -0.3
41 AT5G58030 Transport protein particle (TRAPP) component 0.75 0.31 -0.31
42 AT1G26630 Eukaryotic translation initiation factor 5A-1 (eIF-5A 1)
protein		 EUKARYOTIC ELONGATION FACTOR 5A-2,
EUKARYOTIC ELONGATION FACTOR 5A-2,
FUMONISIN B1-RESISTANT12		 0.75 0.31 -0.3
43 AT1G64090 Reticulan like protein B3 Reticulan like protein B3 0.75 0.31 -0.32
44 AT4G39990 RAB GTPase homolog A4B GTP-BINDING PROTEIN 3, ATRAB11G,
ARABIDOPSIS THALIANA RAB GTPASE
HOMOLOG A 4B, RAB GTPase homolog
A4B		 0.75 0.31 -0.31
45 AT1G11650 RNA-binding (RRM/RBD/RNP motifs) family protein ATRBP45B, RBP45B 0.75 0.3 -0.35
46 AT1G56330 secretion-associated RAS 1B SECRETION-ASSOCIATED RAS 1,
secretion-associated RAS 1B,
ARABIDOPSIS THALIANA
SECRETION-ASSOCIATED RAS 1B,
SECRETION-ASSOCIATED RAS 1,
secretion-associated RAS 1B		 0.75 0.3 -0.29
47 AT2G32580 Protein of unknown function (DUF1068) 0.75 0.32 -0.32
48 AT5G07110 prenylated RAB acceptor 1.B6 prenylated RAB acceptor 1.B6 0.74 0.31 -0.32
49 AT1G22450 cytochrome C oxidase 6B CYTOCHROME C OXIDASE 6B2,
cytochrome C oxidase 6B		 0.74 0.33 -0.3
50 AT5G03740 histone deacetylase 2C histone deacetylase 2C, HISTONE
DEACETYLASE 3		 0.74 0.3 -0.32
51 AT5G44370 phosphate transporter 4;6 phosphate transporter 4;6 0.74 0.32 -0.3
52 AT3G17390 S-adenosylmethionine synthetase family protein METHIONINE ADENOSYLTRANSFERASE 4,
METHIONINE OVER-ACCUMULATOR 3,
S-ADENOSYLMETHIONINE SYNTHETASE 3		 0.74 0.33 -0.31
53 AT5G24650 Mitochondrial import inner membrane translocase subunit
Tim17/Tim22/Tim23 family protein		 0.74 0.31 -0.32
54 AT4G29390 Ribosomal protein S30 family protein 0.74 0.31 -0.31
55 AT4G12480 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 EARLY ARABIDOPSIS ALUMINUM INDUCED
1, pEARLI 1		 0.74 0.3 -0.32
56 AT5G14030 translocon-associated protein beta (TRAPB) family protein 0.74 0.33 -0.33
57 AT5G54900 RNA-binding protein 45A RNA-binding protein 45A,
RNA-binding protein 45A		 0.74 0.31 -0.32
58 AT4G05450 mitochondrial ferredoxin 1 ARABIDOPSIS MITOCHONDRIAL
FERREDOXIN 1, mitochondrial
ferredoxin 1		 0.74 0.32 -0.34
59 AT5G23300 pyrimidine d pyrimidine d 0.74 0.3 -0.31
60 AT5G14250 Proteasome component (PCI) domain protein CONSTITUTIVE PHOTOMORPHOGENIC 13,
COP9 SIGNALOSOME SUBUNIT 3, FUSCA
11		 0.74 0.34 -0.33
61 AT3G49720 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, Golgi apparatus, plasma
membrane, membrane; EXPRESSED IN: 25 plant structures;
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G65810.1); Has 64 Blast hits to 64 proteins in 11
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.73 0.34 -0.28
62 AT1G03150 Acyl-CoA N-acyltransferases (NAT) superfamily protein 0.73 0.32 -0.31
63 AT3G29360 UDP-glucose 6-dehydrogenase family protein UDP-glucose dehydrogenase 2 0.73 0.34 -0.31
64 AT2G36880 methionine adenosyltransferase 3 methionine adenosyltransferase 3 0.73 0.31 -0.29
65 AT5G63200 tetratricopeptide repeat (TPR)-containing protein -0.73 0.34 -0.31
66 AT4G31130 Protein of unknown function (DUF1218) 0.73 0.32 -0.31
67 AT2G21195 unknown protein; Has 28 Blast hits to 28 proteins in 11
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.73 0.32 -0.32
68 AT4G19160 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.73 0.32 -0.33
69 AT3G17780 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
intracellular protein transport; LOCATED IN: endomembrane
system, integral to membrane, endoplasmic reticulum;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: B-cell
receptor-associated 31-like (InterPro:IPR008417); BEST
Arabidopsis thaliana protein match is: B-cell
receptor-associated 31-like (TAIR:AT1G48440.1); Has 102
Blast hits to 102 proteins in 17 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 102; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.73 0.31 -0.34
70 AT2G45790 phosphomannomutase PHOSPHOMANNOMUTASE,
phosphomannomutase		 0.73 0.32 -0.33
71 AT1G26840 origin recognition complex protein 6 ARABIDOPSIS THALIANA ORIGIN
RECOGNITION COMPLEX PROTEIN 6,
origin recognition complex protein
6		 0.73 0.3 -0.32
72 AT5G45310 unknown protein; LOCATED IN: endomembrane system; EXPRESSED
IN: stem, inflorescence meristem, root, leaf; EXPRESSED
DURING: LP.04 four leaves visible; Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink).		 -0.72 0.31 -0.31
73 AT1G28260 Telomerase activating protein Est1 -0.72 0.3 -0.32
74 AT5G63560 HXXXD-type acyl-transferase family protein -0.71 0.32 -0.29
75 AT2G22660 Protein of unknown function (duplicated DUF1399) -0.7 0.32 -0.33
76 AT4G04740 calcium-dependent protein kinase 23 ATCPK23, calcium-dependent protein
kinase 23		 -0.69 0.33 -0.31
77 AT1G14790 RNA-dependent RNA polymerase 1 ATRDRP1, RNA-dependent RNA
polymerase 1		 -0.69 0.33 -0.3
78 AT1G09910 Rhamnogalacturonate lyase family protein -0.69 0.31 -0.29
79 AT2G18370 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.68 0.32 -0.35
80 AT3G08020 PHD finger family protein -0.68 0.32 -0.32
81 AT5G39910 Pectin lyase-like superfamily protein -0.67 0.3 -0.31
82 AT1G67530 ARM repeat superfamily protein -0.67 0.32 -0.32
83 AT3G20120 cytochrome P450, family 705, subfamily A, polypeptide 21 cytochrome P450, family 705,
subfamily A, polypeptide 21		 -0.67 0.32 -0.3
84 AT3G01770 bromodomain and extraterminal domain protein 10 bromodomain and extraterminal
domain protein 10, bromodomain and
extraterminal domain protein 10		 -0.63 0.33 -0.32
85 AT2G48110 reduced epidermal fluorescence 4 MED33B, REDUCED EPIDERMAL
FLUORESCENCE 4		 -0.63 0.3 -0.33
86 AT1G69270 receptor-like protein kinase 1 receptor-like protein kinase 1 -0.62 0.33 -0.32
87 AT1G73570 HCP-like superfamily protein -0.62 0.32 -0.33
88 AT3G19100 Protein kinase superfamily protein -0.62 0.29 -0.31
89 AT2G46180 golgin candidate 4 golgin candidate 4 -0.61 0.3 -0.32
90 AT3G25990 Homeodomain-like superfamily protein -0.61 0.31 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
91 C0123 Isoleucine D,L-Isoleucine L-Isoleucine tRNA charging,
isoleucine biosynthesis I (from threonine),
jasmonoyl-amino acid conjugates biosynthesis I,
isoleucine degradation I 		-0.88 0.44 -0.46 C0123
92 C0137 Leucine L-Leucine L-Leucine indole-3-acetyl-amino acid biosynthesis,
leucine biosynthesis,
jasmonoyl-amino acid conjugates biosynthesis I,
IAA biosynthesis II,
tRNA charging,
leucine degradation I 		-0.7 0.31 -0.32 C0137
93 C0260 Tyrosine L-(-)-Tyrosine L-Tyrosine tyrosine biosynthesis II,
4-hydroxyphenylpyruvate biosynthesis,
tyrosine degradation I,
tyrosine biosynthesis I,
tRNA charging,
hydroxycinnamic acid tyramine amides biosynthesis 		-0.68 0.31 -0.33 C0260
94 C0097 Glucosamine-6-phosphate D-Glucosamine-6-phosphate D-Glucosamine-6-phosphate UDP-N-acetyl-D-glucosamine biosynthesis II -0.66 0.33 -0.32 C0097
95 C0140 Lysine L-Lysine L-Lysine lysine degradation II,
tRNA charging,
lysine biosynthesis VI,
lysine degradation I 		-0.62 0.32 -0.32 C0140