AT4G00180 : YABBY3
Query Information
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AGICode AT4G00180
Description Plant-specific transcription factor YABBY family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G00180 Plant-specific transcription factor YABBY family protein YABBY3 1 0.31 -0.3
2 AT2G45770 signal recognition particle receptor protein, chloroplast
(FTSY)		 CPFTSY, FERRIC CHELATE REDUCTASE
DEFECTIVE 4		 0.89 0.34 -0.31
3 AT1G14270 CAAX amino terminal protease family protein 0.89 0.34 -0.32
4 AT1G03475 Coproporphyrinogen III oxidase ATCPO-I, HEMF1, LESION INITIATION
2		 0.87 0.29 -0.31
5 AT2G39140 pseudouridine synthase family protein PIGMENT DEFECTIVE 328, SUPPRESSOR
OF VARIEGATION 1		 0.87 0.32 -0.31
6 AT1G64355 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3593 (InterPro:IPR021995);
Has 301 Blast hits to 301 proteins in 96 species: Archae -
0; Bacteria - 143; Metazoa - 0; Fungi - 0; Plants - 44;
Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).		 0.87 0.33 -0.32
7 AT3G53900 uracil phosphoribosyltransferase PYRIMIDINE R, uracil
phosphoribosyltransferase		 0.87 0.36 -0.32
8 AT5G65410 homeobox protein 25 ARABIDOPSIS THALIANA HOMEOBOX
PROTEIN 25, homeobox protein 25,
ZINC FINGER HOMEODOMAIN 2, ZINC
FINGER HOMEODOMAIN 1		 0.86 0.33 -0.3
9 AT5G01590 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 60
Blast hits to 59 proteins in 31 species: Archae - 0;
Bacteria - 20; Metazoa - 1; Fungi - 2; Plants - 33; Viruses
- 0; Other Eukaryotes - 4 (source: NCBI BLink).		 0.86 0.34 -0.32
10 AT3G24430 ATP binding HIGH-CHLOROPHYLL-FLUORESCENCE 101 0.86 0.33 -0.32
11 AT5G16140 Peptidyl-tRNA hydrolase family protein 0.86 0.29 -0.35
12 AT5G51100 Fe superoxide dismutase 2 Fe superoxide dismutase 2 0.86 0.29 -0.31
13 AT5G50250 chloroplast RNA-binding protein 31B chloroplast RNA-binding protein
31B		 0.85 0.31 -0.32
14 AT5G53210 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 SPEECHLESS 0.85 0.33 -0.31
15 AT2G26550 heme oxygenase 2 heme oxygenase 2 0.85 0.33 -0.31
16 AT1G03630 protochlorophyllide oxidoreductase C protochlorophyllide oxidoreductase
C, PORC		 0.85 0.32 -0.29
17 AT5G14260 Rubisco methyltransferase family protein 0.84 0.32 -0.34
18 AT3G07670 Rubisco methyltransferase family protein 0.84 0.3 -0.32
19 AT4G31805 WRKY family transcription factor 0.84 0.31 -0.32
20 AT2G28930 protein kinase 1B protein kinase 1B, protein kinase
1B		 0.84 0.3 -0.33
21 AT1G74850 plastid transcriptionally active 2 PIGMENT DEFECTIVE 343, plastid
transcriptionally active 2		 0.84 0.33 -0.3
22 AT4G39970 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 0.83 0.32 -0.31
23 AT3G52750 Tubulin/FtsZ family protein FTSZ2-2 0.83 0.31 -0.32
24 AT5G39830 Trypsin family protein with PDZ domain DEG8, DEG PROTEASE 8 0.83 0.32 -0.3
25 AT1G14440 homeobox protein 31 homeobox protein 31, homeobox
protein 31, ZINC FINGER
HOMEODOMAIN 4		 0.83 0.3 -0.3
26 AT3G63490 Ribosomal protein L1p/L10e family EMBRYO DEFECTIVE 3126 0.83 0.32 -0.31
27 AT5G27560 Domain of unknown function (DUF1995) 0.83 0.3 -0.32
28 AT3G63510 FMN-linked oxidoreductases superfamily protein 0.83 0.32 -0.31
29 AT5G55710 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast
thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 14 growth stages; BEST
Arabidopsis thaliana protein match is: Uncharacterised
conserved protein ycf60 (TAIR:AT2G47840.1); Has 1807 Blast
hits to 1807 proteins in 277 species: Archae - 0; Bacteria
- 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 translocon at the inner envelope
membrane of chloroplasts 20-V,
translocon at the inner envelope
membrane of chloroplasts 20-V		 0.82 0.31 -0.31
30 AT2G26900 Sodium Bile acid symporter family bile acid:sodium symporter family
protein 2		 0.82 0.3 -0.3
31 AT4G03210 xyloglucan endotransglucosylase/hydrolase 9 xyloglucan
endotransglucosylase/hydrolase 9		 0.82 0.32 -0.3
32 AT2G27680 NAD(P)-linked oxidoreductase superfamily protein 0.82 0.31 -0.28
33 AT3G15110 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane; EXPRESSED IN: 20 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Protein of unknown function DUF3082
(InterPro:IPR021434); Has 77 Blast hits to 77 proteins in
38 species: Archae - 0; Bacteria - 37; Metazoa - 0; Fungi -
0; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source:
NCBI BLink).		 0.82 0.32 -0.31
34 AT4G25910 NFU domain protein 3 ATCNFU3, NFU domain protein 3 0.82 0.32 -0.31
35 AT3G15480 Protein of unknown function (DUF1218) 0.82 0.32 -0.32
36 AT5G42310 Pentatricopeptide repeat (PPR-like) superfamily protein 0.81 0.3 -0.34
37 AT5G44790 copper-exporting ATPase / responsive-to-antagonist 1 /
copper-transporting ATPase (RAN1)		 HMA7, RESPONSIVE-TO-ANTAGONIST 1 -0.81 0.32 -0.29
38 AT2G35370 glycine decarboxylase complex H glycine decarboxylase complex H 0.81 0.32 -0.3
39 AT4G27700 Rhodanese/Cell cycle control phosphatase superfamily
protein		 0.81 0.3 -0.32
40 AT1G12430 armadillo repeat kinesin 3 armadillo repeat kinesin 3,
Arabidopsis thaliana KINESIN
Ungrouped clade, gene A,
phosphatidic acid kinase		 0.81 0.33 -0.29
41 AT5G52440 Bacterial sec-independent translocation protein mttA/Hcf106 HIGH CHLOROPHYLL FLUORESCENCE 106 0.81 0.32 -0.32
42 AT3G52960 Thioredoxin superfamily protein 0.81 0.33 -0.32
43 AT5G19940 Plastid-lipid associated protein PAP / fibrillin family
protein		 0.81 0.33 -0.33
44 AT3G04290 Li-tolerant lipase 1 ATLTL1, Li-tolerant lipase 1 0.81 0.31 -0.32
45 AT4G12080 AT-hook motif nuclear-localized protein 1 AT-hook motif nuclear-localized
protein 1, ATAHL1		 -0.79 0.3 -0.36
46 AT5G20960 aldehyde oxidase 1 aldehyde oxidase 1, aldehyde
oxidase 1, aldehyde oxidase alpha,
ARABIDOPSIS THALIANA ALDEHYDE
OXIDASE 1, ATAO, Arabidopsis
thaliana aldehyde oxidase 1		 -0.79 0.31 -0.29
47 AT5G63930 Leucine-rich repeat protein kinase family protein -0.78 0.35 -0.32
48 AT1G33750 Terpenoid cyclases/Protein prenyltransferases superfamily
protein		 -0.76 0.29 -0.33
49 AT1G35260 MLP-like protein 165 MLP-like protein 165 -0.76 0.33 -0.31
50 AT3G16340 pleiotropic drug resistance 1 ATP-binding cassette G29,
PLEIOTROPIC DRUG RESISTANCE 1,
pleiotropic drug resistance 1		 -0.76 0.32 -0.33
51 AT4G34600 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: pollen tube growth; LOCATED IN: endomembrane
system; EXPRESSED IN: 11 plant structures; EXPRESSED
DURING: M germinated pollen stage, LP.04 four leaves
visible, 4 anthesis, petal differentiation and expansion
stage; BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT2G16385.1); Has 17 Blast hits to 17
proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.76 0.29 -0.3
52 AT3G61850 Dof-type zinc finger DNA-binding family protein dof affecting germination 1 -0.74 0.3 -0.31
53 AT3G19200 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G34419.1); Has 51 Blast hits
to 51 proteins in 10 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.74 0.3 -0.31
54 AT5G58730 pfkB-like carbohydrate kinase family protein -0.73 0.32 -0.33
55 AT5G51500 Plant invertase/pectin methylesterase inhibitor superfamily -0.73 0.31 -0.32
56 AT2G41850 polygalacturonase abscission zone A. thaliana ARABIDOPSIS DEHISCENCE ZONE
POLYGALACTURONASE 2,
polygalacturonase abscission zone
A. thaliana		 -0.73 0.3 -0.31
57 AT2G28110 Exostosin family protein FRAGILE FIBER 8, IRREGULAR XYLEM 7 -0.73 0.31 -0.33
58 AT2G39110 Protein kinase superfamily protein -0.73 0.33 -0.3
59 AT1G30270 CBL-interacting protein kinase 23 ATCIPK23, CBL-interacting protein
kinase 23, LOW-K+-SENSITIVE 1,
SOS2-like protein kinase 17,
SNF1-RELATED PROTEIN KINASE 3.23		 -0.73 0.31 -0.32
60 AT1G22440 Zinc-binding alcohol dehydrogenase family protein -0.73 0.32 -0.32
61 AT1G69526 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.73 0.33 -0.3
62 AT3G24240 Leucine-rich repeat receptor-like protein kinase family
protein		 -0.71 0.33 -0.34
63 AT3G29035 NAC domain containing protein 3 Arabidopsis NAC domain containing
protein 59, NAC domain containing
protein 3, NAC domain containing
protein 3, ORE1 SISTER1		 -0.71 0.3 -0.32
64 AT3G12760 CONTAINS InterPro DOMAIN/s: Defective-in-cullin neddylation
protein (InterPro:IPR014764), Protein of unknown function
DUF298 (InterPro:IPR005176), UBA-like (InterPro:IPR009060);
BEST Arabidopsis thaliana protein match is: Domain of
unknown function (DUF298) (TAIR:AT1G15860.2); Has 857 Blast
hits to 855 proteins in 202 species: Archae - 0; Bacteria -
0; Metazoa - 482; Fungi - 154; Plants - 139; Viruses - 0;
Other Eukaryotes - 82 (source: NCBI BLink).		 -0.71 0.32 -0.3
65 AT3G26590 MATE efflux family protein -0.71 0.32 -0.32
66 AT1G09380 nodulin MtN21 /EamA-like transporter family protein -0.71 0.32 -0.35
67 AT5G24600 Protein of unknown function, DUF599 -0.71 0.32 -0.32
68 AT3G21240 4-coumarate:CoA ligase 2 4-coumarate:CoA ligase 2, AT4CL2 -0.71 0.32 -0.35
69 AT1G11580 methylesterase PCR A ATPMEPCRA, methylesterase PCR A -0.71 0.33 -0.31
70 AT5G48940 Leucine-rich repeat transmembrane protein kinase family
protein		 -0.7 0.32 -0.33
71 AT4G37295 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: stem, root, leaf;
EXPRESSED DURING: LP.06 six leaves visible, LP.04 four
leaves visible; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.7 0.35 -0.31
72 AT2G34500 cytochrome P450, family 710, subfamily A, polypeptide 1 cytochrome P450, family 710,
subfamily A, polypeptide 1		 -0.7 0.32 -0.31
73 AT5G59520 ZRT/IRT-like protein 2 ZRT/IRT-like protein 2 -0.69 0.3 -0.31
74 AT3G15300 VQ motif-containing protein -0.69 0.31 -0.32
75 AT2G47130 NAD(P)-binding Rossmann-fold superfamily protein AtSDR3, short-chain
dehydrogenase/reductase 2		 -0.69 0.32 -0.33
76 AT1G30760 FAD-binding Berberine family protein -0.69 0.31 -0.31
77 AT2G39300 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: vacuole; EXPRESSED IN: 8 plant structures;
EXPRESSED DURING: 4 anthesis, petal differentiation and
expansion stage; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G55060.1); Has 46416 Blast
hits to 28308 proteins in 1743 species: Archae - 734;
Bacteria - 4822; Metazoa - 24446; Fungi - 3539; Plants -
2267; Viruses - 163; Other Eukaryotes - 10445 (source: NCBI
BLink).		 -0.69 0.31 -0.34
78 AT2G46950 cytochrome P450, family 709, subfamily B, polypeptide 2 cytochrome P450, family 709,
subfamily B, polypeptide 2		 -0.68 0.32 -0.32
79 AT1G31950 Terpenoid cyclases/Protein prenyltransferases superfamily
protein		 -0.68 0.35 -0.33
80 AT4G13235 embryo sac development arrest 21 embryo sac development arrest 21 -0.68 0.32 -0.31
81 AT5G06300 Putative lysine decarboxylase family protein LONELY GUY 7 -0.68 0.32 -0.29
82 AT5G05640 nucleoprotein-related -0.68 0.32 -0.31
83 AT3G21770 Peroxidase superfamily protein -0.68 0.3 -0.3
84 AT1G01640 BTB/POZ domain-containing protein -0.68 0.31 -0.33
85 AT1G15210 pleiotropic drug resistance 7 ATP-binding cassette G35,
PLEIOTROPIC DRUG RESISTANCE 7,
pleiotropic drug resistance 7		 -0.68 0.3 -0.32
86 AT4G11350 Protein of unknown function (DUF604) -0.67 0.31 -0.32
87 AT3G49350 Ypt/Rab-GAP domain of gyp1p superfamily protein -0.67 0.31 -0.32
88 AT5G54800 glucose 6-phosphate/phosphate translocator 1 ARABIDOPSIS GLUCOSE
6-PHOSPHATE/PHOSPHATE TRANSLOCATOR
1, glucose 6-phosphate/phosphate
translocator 1		 -0.67 0.31 -0.32
89 AT5G17330 glutamate decarboxylase glutamate decarboxylase, GLUTAMATE
DECARBOXYLASE 1		 -0.67 0.3 -0.33
90 AT3G21710 unknown protein; Has 42 Blast hits to 42 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.67 0.32 -0.32