AT4G00460 : ATROPGEF3
Query Information
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AGICode AT4G00460
Description RHO guanyl-nucleotide exchange factor 3
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G00460 RHO guanyl-nucleotide exchange factor 3 ATROPGEF3, RHO guanyl-nucleotide
exchange factor 3		 1 0.33 -0.3
2 AT1G56160 myb domain protein 72 ARABIDOPSIS THALIANA MYB DOMAIN
PROTEIN 72, myb domain protein 72		 0.76 0.35 -0.32
3 AT3G49300 proline-rich family protein -0.74 0.32 -0.33
4 AT1G52840 transposable element gene 0.71 0.31 -0.3
5 AT1G23540 Protein kinase superfamily protein proline-rich extensin like
receptor kinase, INFLORESCENCE
GROWTH INHIBITOR 1, proline-rich
extensin-like receptor kinase 12		 0.71 0.32 -0.32
6 AT5G22420 fatty acid reductase 7 fatty acid reductase 7 0.7 0.3 -0.33
7 AT1G65940 pseudogene, similar to Dof zinc finger protein, blastp
match of 61% identity and 1.7e-10 P-value to
GP|4996646|dbj|BAA78575.1||AB028132 Dof zinc finger protein
{Oryza sativa}		 0.7 0.3 -0.3
8 AT5G58910 laccase 16 laccase 16 0.7 0.32 -0.31
9 AT4G07790 transposable element gene 0.7 0.3 -0.32
10 AT5G25430 HCO3- transporter family 0.7 0.3 -0.33
11 AT1G50090 D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily protein		 0.69 0.31 -0.31
12 AT1G57943 purine permease 17 purine permease 17, purine
permease 17		 -0.68 0.33 -0.33
13 AT3G29430 Terpenoid synthases superfamily protein 0.68 0.31 -0.29
14 AT5G48270 Plant protein of unknown function (DUF868) -0.68 0.33 -0.31
15 AT1G07460 Concanavalin A-like lectin family protein 0.68 0.33 -0.32
16 AT3G27440 uridine kinase-like 5 uridine kinase-like 5 0.68 0.33 -0.32
17 AT5G45640 Subtilisin-like serine endopeptidase family protein 0.67 0.32 -0.32
18 AT1G26960 homeobox protein 23 homeobox protein 23, homeobox
protein 23		 0.67 0.31 -0.31
19 AT2G40620 Basic-leucine zipper (bZIP) transcription factor family
protein		 0.66 0.31 -0.32
20 AT1G26710 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G26720.1); Has 9 Blast hits to
9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.66 0.3 -0.32
21 AT2G34360 MATE efflux family protein -0.66 0.3 -0.32
22 AT1G21430 Flavin-binding monooxygenase family protein YUC11 -0.65 0.31 -0.32
23 AT4G03760 transposable element gene 0.65 0.32 -0.31
24 AT2G15880 Leucine-rich repeat (LRR) family protein 0.65 0.31 -0.32
25 AT4G30030 Eukaryotic aspartyl protease family protein -0.65 0.31 -0.32
26 AT2G18350 homeobox protein 24 homeobox protein 24, homeobox
protein 24, ZINC FINGER
HOMEODOMAIN 6		 0.65 0.3 -0.29
27 AT1G68090 annexin 5 annexin 5, ANNEXIN ARABIDOPSIS
THALIANA 5		 -0.65 0.3 -0.31
28 AT1G18970 germin-like protein 4 germin-like protein 4 0.65 0.33 -0.31
29 AT5G61980 ARF-GAP domain 1 ARF-GAP domain 1 0.64 0.29 -0.33
30 AT1G02740 MRG family protein 0.64 0.34 -0.3
31 AT1G11090 alpha/beta-Hydrolases superfamily protein 0.64 0.32 -0.32
32 AT2G34180 CBL-interacting protein kinase 13 WPL4-LIKE 2, CBL-interacting
protein kinase 13, SNF1-RELATED
PROTEIN KINASE 3.7, WPL4-LIKE 2		 0.64 0.31 -0.31
33 AT4G23493 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.64 0.32 -0.32
34 AT1G43940 transposable element gene 0.64 0.3 -0.33
35 AT2G11120 transposable element gene -0.64 0.32 -0.31
36 AT1G72290 Kunitz family trypsin and protease inhibitor protein -0.63 0.33 -0.33
37 AT1G49270 Protein kinase superfamily protein proline-rich extensin-like
receptor kinase 7, proline-rich
extensin-like receptor kinase 7		 0.63 0.31 -0.34
38 AT1G35183 unknown protein; Has 5 Blast hits to 5 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.63 0.32 -0.31
39 AT2G18115 pseudogene, glycine-rich protein, predicted proteins,
Arabidopsis thaliana		 0.63 0.34 -0.34
40 AT1G19120 Small nuclear ribonucleoprotein family protein 0.63 0.3 -0.32
41 AT5G13990 exocyst subunit exo70 family protein C2 exocyst subunit exo70 family
protein C2, exocyst subunit exo70
family protein C2		 0.63 0.31 -0.33
42 AT5G17180 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.63 0.33 -0.34
43 AT2G46860 pyrophosphorylase 3 pyrophosphorylase 3,
pyrophosphorylase 3		 0.63 0.32 -0.29
44 AT1G28270 ralf-like 4 ralf-like 4 -0.63 0.3 -0.33
45 AT2G18060 vascular related NAC-domain protein 1 Arabidopsis NAC domain containing
protein 37, vascular related
NAC-domain protein 1		 0.62 0.32 -0.31
46 AT1G34330 pseudogene, putative peroxidase, similar to anionic
peroxidase GI:559235 from (Petroselinum crispum); blastp
match of 35% identity and 2.3e-53 P-value to
GP|21426121|gb|AAM52318.1|AC105363_7|AC105363 Putative
peroxidase {Oryza sativa (japonica cultivar-group)}		 0.62 0.32 -0.32
47 AT5G25370 phospholipase D alpha 3 phospholipase D alpha 3 0.62 0.3 -0.34
48 AT5G66960 Prolyl oligopeptidase family protein -0.62 0.34 -0.34
49 AT3G33530 Transducin family protein / WD-40 repeat family protein -0.62 0.35 -0.32
50 AT1G77950 AGAMOUS-like 67 AGAMOUS-like 67 -0.62 0.33 -0.31
51 AT2G19550 alpha/beta-Hydrolases superfamily protein -0.62 0.31 -0.31
52 AT4G10780 LRR and NB-ARC domains-containing disease resistance
protein		 0.62 0.31 -0.3
53 AT1G02340 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 FBI1, LONG HYPOCOTYL IN FAR-RED,
REDUCED PHYTOCHROME SIGNALING 1,
REDUCED SENSITIVITY TO FAR-RED
LIGHT 1		 0.61 0.34 -0.33
54 AT4G18395 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.61 0.32 -0.31
55 AT5G04270 DHHC-type zinc finger family protein 0.61 0.3 -0.34
56 AT5G62800 Protein with RING/U-box and TRAF-like domains -0.61 0.32 -0.32
57 AT3G25850 Cysteine/Histidine-rich C1 domain family protein 0.61 0.3 -0.33
58 AT4G04150 transposable element gene -0.61 0.31 -0.32
59 AT3G11870 Endoribonuclease/protein kinase IRE1-like -0.61 0.31 -0.31
60 AT5G10880 tRNA synthetase-related / tRNA ligase-related -0.61 0.31 -0.3
61 AT1G07990 SIT4 phosphatase-associated family protein -0.6 0.31 -0.34
62 AT5G11360 Interleukin-1 receptor-associated kinase 4 protein -0.6 0.3 -0.34
63 AT4G23110 insulin-like growth factor binding -0.6 0.3 -0.32
64 AT5G17480 pollen calcium-binding protein 1 pollen calcium-binding protein 1,
pollen calcium-binding protein 1		 0.6 0.31 -0.32
65 AT2G48060 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: shoot, sperm cell;
CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF3595 (InterPro:IPR021999); Has 533 Blast hits to 341
proteins in 95 species: Archae - 2; Bacteria - 15; Metazoa
- 318; Fungi - 0; Plants - 93; Viruses - 0; Other
Eukaryotes - 105 (source: NCBI BLink).		 -0.6 0.32 -0.34
66 AT4G14180 putative recombination initiation defect 1 putative recombination initiation
defect 1, putative recombination
initiation defect 1		 -0.6 0.3 -0.33
67 AT3G07490 ARF-GAP domain 11 ARF-GAP domain 11, AtCML3,
calmodulin-like 3		 0.6 0.31 -0.3
68 AT3G20020 protein arginine methyltransferase 6 ARABIDOPSIS THALIANA PROTEIN
ARGININE METHYLTRANSFERASE 6,
protein arginine methyltransferase
6		 -0.6 0.31 -0.33
69 AT1G36910 transposable element gene 0.6 0.31 -0.32
70 AT1G66450 Cysteine/Histidine-rich C1 domain family protein 0.6 0.3 -0.32
71 AT5G02920 F-box/RNI-like superfamily protein -0.6 0.33 -0.31
72 AT3G04100 AGAMOUS-like 57 AGAMOUS-like 57 0.6 0.33 -0.31
73 AT2G23860 pseudogene, similar to VAP27, blastp match of 56% identity
and 1.3e-25 P-value to GP|6688926|emb|CAB65313.1||AJ251365
VAP27 {Nicotiana plumbaginifolia}		 -0.6 0.33 -0.32
74 AT1G07680 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G23903.1); Has 7 Blast
hits to 7 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.6 0.32 -0.33
75 AT3G45440 Concanavalin A-like lectin protein kinase family protein -0.59 0.32 -0.32
76 AT5G24880 BEST Arabidopsis thaliana protein match is:
calmodulin-binding protein-related (TAIR:AT5G10660.1); Has
1807 Blast hits to 1807 proteins in 277 species: Archae -
0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 0.59 0.32 -0.31
77 AT4G05340 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.59 0.34 -0.35
78 AT3G28120 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; Has 0 Blast hits to 0 proteins in 0
species (source: NCBI BLink).		 -0.59 0.29 -0.32
79 AT1G06390 GSK3/SHAGGY-like protein kinase 1 ATGSK1, A. THALIANA SHAGGY-LIKE
KINASE GROUP 2 3, SHAGGY-LIKE
PROTEIN KINASE 22, BIN2-LIKE 2,
GSK3/SHAGGY-like protein kinase 1,
SHAGGY-LIKE PROTEIN KINASE 22		 0.59 0.3 -0.34
80 AT1G75160 Protein of unknown function (DUF620) 0.58 0.32 -0.32
81 AT1G18570 myb domain protein 51 myb domain protein 51, BW51A,
BW51B, HIGH INDOLIC GLUCOSINOLATE
1, myb domain protein 51		 0.58 0.31 -0.31
82 AT1G62920 CONTAINS InterPro DOMAIN/s: Proteasome maturation factor
UMP1 (InterPro:IPR008012); BEST Arabidopsis thaliana
protein match is: Proteasome maturation factor UMP1
(TAIR:AT1G67250.1); Has 70 Blast hits to 70 proteins in 15
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.58 0.29 -0.32
83 AT3G20100 cytochrome P450, family 705, subfamily A, polypeptide 19 cytochrome P450, family 705,
subfamily A, polypeptide 19		 -0.58 0.34 -0.31
84 AT2G01130 DEA(D/H)-box RNA helicase family protein -0.58 0.31 -0.31
85 AT1G34575 FAD-binding Berberine family protein -0.58 0.33 -0.3
86 AT3G60560 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.58 0.31 -0.31
87 ATMG00010 hypothetical protein ORF153A 0.58 0.3 -0.33
88 AT1G74840 Homeodomain-like superfamily protein 0.58 0.29 -0.33
89 AT2G01390 Tetratricopeptide repeat (TPR)-like superfamily protein EMBRYO DEFECTIVE 3111 -0.58 0.3 -0.31
90 AT1G63060 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: petal, leaf whorl, male
gametophyte, flower; EXPRESSED DURING: L mature pollen
stage, M germinated pollen stage, 4 anthesis, petal
differentiation and expansion stage; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G07330.1); Has 42 Blast hits to 42 proteins in 12
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.57 0.31 -0.31
91 AT4G27420 ABC-2 type transporter family protein ATP-binding cassette G9 -0.57 0.3 -0.31
92 AT3G20620 F-box family protein-related -0.57 0.31 -0.31
93 AT2G34370 Pentatricopeptide repeat (PPR) superfamily protein -0.57 0.3 -0.31
94 AT5G59040 copper transporter 3 copper transporter 3 -0.57 0.31 -0.31
95 AT1G24000 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 -0.56 0.31 -0.31
96 AT1G03960 Calcium-binding EF hand family protein -0.56 0.35 -0.33
97 AT3G25840 Protein kinase superfamily protein -0.55 0.3 -0.32
98 AT1G11990 O-fucosyltransferase family protein -0.55 0.3 -0.31
99 AT3G63020 Protein of unknown function (DUF3049) -0.55 0.31 -0.29
100 AT1G14970 O-fucosyltransferase family protein -0.54 0.32 -0.31
101 AT5G61740 ABC2 homolog 14 ATP-binding cassette A10,
ARABIDOPSIS THALIANA ABC2 HOMOLOG
14, ABC2 homolog 14		 -0.54 0.32 -0.3
102 AT2G19610 RING/U-box superfamily protein -0.54 0.3 -0.31