AT2G30280 : DEFECTIVE IN MERISTEM SILENCING 4
Query Information
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AGICode AT2G30280
Description RNA-directed DNA methylation 4
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT2G30280 RNA-directed DNA methylation 4 DEFECTIVE IN MERISTEM SILENCING 4,
RNA-directed DNA methylation 4		 1 0.3 -0.35
2 AT5G23890 LOCATED IN: mitochondrion, chloroplast thylakoid membrane,
chloroplast, plastid, chloroplast envelope; EXPRESSED IN:
24 plant structures; EXPRESSED DURING: 14 growth stages;
CONTAINS InterPro DOMAIN/s: S-layer homology domain
(InterPro:IPR001119); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G52410.2); Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 -0.71 0.31 -0.31
3 AT5G51430 conserved oligomeric Golgi complex component-related / COG
complex component-related		 EMBRYO YELLOW -0.68 0.31 -0.29
4 AT3G24840 Sec14p-like phosphatidylinositol transfer family protein -0.66 0.32 -0.32
5 AT2G35530 basic region/leucine zipper transcription factor 16 AtbZIP16, basic region/leucine
zipper transcription factor 16		 -0.66 0.32 -0.29
6 AT3G54030 Protein kinase protein with tetratricopeptide repeat domain -0.65 0.3 -0.31
7 AT4G22790 MATE efflux family protein 0.65 0.33 -0.31
8 AT2G16365 F-box family protein -0.64 0.33 -0.29
9 AT2G40950 Basic-leucine zipper (bZIP) transcription factor family
protein		 BZIP17 -0.64 0.3 -0.3
10 AT4G04790 Tetratricopeptide repeat (TPR)-like superfamily protein -0.64 0.31 -0.31
11 AT1G12790 CONTAINS InterPro DOMAIN/s: RuvA domain 2-like
(InterPro:IPR010994); Has 29 Blast hits to 29 proteins in 9
species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0;
Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.64 0.31 -0.33
12 AT5G08560 transducin family protein / WD-40 repeat family protein -0.63 0.3 -0.3
13 AT1G73430 sec34-like family protein -0.63 0.31 -0.32
14 AT1G77600 ARM repeat superfamily protein -0.63 0.32 -0.31
15 AT5G24460 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; Has 1807 Blast hits to
1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 -0.63 0.29 -0.29
16 AT4G27940 manganese tracking factor for mitochondrial SOD2 ARABIDOPSIS MANGANESE TRACKING
FACTOR FOR MITOCHONDRIAL SOD2,
manganese tracking factor for
mitochondrial SOD2		 -0.63 0.31 -0.32
17 AT5G15470 galacturonosyltransferase 14 galacturonosyltransferase 14 -0.62 0.31 -0.32
18 AT5G38840 SMAD/FHA domain-containing protein -0.62 0.32 -0.31
19 AT3G18040 MAP kinase 9 MAP kinase 9 -0.62 0.33 -0.31
20 AT1G12730 GPI transamidase subunit PIG-U 0.62 0.3 -0.31
21 AT5G15910 NAD(P)-binding Rossmann-fold superfamily protein -0.62 0.31 -0.32
22 AT1G59580 mitogen-activated protein kinase homolog 2 mitogen-activated protein kinase
homolog 2, mitogen-activated
protein kinase homolog 2		 0.62 0.31 -0.3
23 AT2G20580 26S proteasome regulatory subunit S2 1A 26S PROTEASOME REGULATORY SUBUNIT
S2 1A, 26S proteasome regulatory
subunit S2 1A		 -0.61 0.32 -0.32
24 AT1G19170 Pectin lyase-like superfamily protein 0.61 0.31 -0.32
25 AT2G27285 Coiled-coil domain-containing protein 55 (DUF2040) -0.61 0.3 -0.3
26 AT1G21630 Calcium-binding EF hand family protein -0.6 0.29 -0.3
27 AT4G14690 Chlorophyll A-B binding family protein EARLY LIGHT-INDUCIBLE PROTEIN 2 -0.6 0.32 -0.32
28 AT5G17030 UDP-glucosyl transferase 78D3 UDP-glucosyl transferase 78D3 -0.6 0.33 -0.33
29 AT3G43300 HOPM interactor 7 HOPM interactor 7, BFA-VISUALIZED
ENDOCYTIC TRAFFICKING DEFECTIVE1		 -0.6 0.3 -0.3
30 AT5G07520 glycine-rich protein 18 ATGRP-8, ATGRP18, glycine-rich
protein 18		 0.59 0.29 -0.31
31 AT5G46190 RNA-binding KH domain-containing protein -0.59 0.32 -0.3
32 AT1G16610 arginine/serine-rich 45 RNPS1, arginine/serine-rich 45 -0.59 0.3 -0.33
33 AT4G37760 squalene epoxidase 3 squalene epoxidase 3 -0.59 0.33 -0.29
34 AT5G49380 CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF625 (InterPro:IPR006887); BEST Arabidopsis thaliana
protein match is: binding (TAIR:AT3G06670.1); Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 0.59 0.32 -0.31
35 AT1G20920 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.59 0.32 -0.32
36 AT1G78550 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 0.58 0.3 -0.3
37 AT1G15190 Fasciclin-like arabinogalactan family protein 0.58 0.31 -0.32
38 AT1G29710 Tetratricopeptide repeat (TPR)-like superfamily protein -0.58 0.29 -0.32
39 AT2G40930 ubiquitin-specific protease 5 ATUBP5, PIGMENT DEFECTIVE EMBRYO
323, ubiquitin-specific protease 5		 -0.57 0.29 -0.31
40 AT4G12000 SNARE associated Golgi protein family -0.57 0.31 -0.31
41 AT4G25360 TRICHOME BIREFRINGENCE-LIKE 18 TRICHOME BIREFRINGENCE-LIKE 18 -0.57 0.27 -0.34
42 AT3G22840 Chlorophyll A-B binding family protein ELIP, EARLY LIGHT-INDUCABLE
PROTEIN		 -0.57 0.31 -0.33
43 AT4G10890 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF2439 (InterPro:IPR018838); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G43722.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 -0.56 0.31 -0.32
44 AT1G27060 Regulator of chromosome condensation (RCC1) family protein 0.56 0.32 -0.31
45 AT1G31730 Adaptin family protein -0.56 0.32 -0.3
46 AT1G31870 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cytosol, nucleus; EXPRESSED IN: 25 plant structures;
EXPRESSED DURING: 15 growth stages; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF2050,
pre-mRNA-splicing factor (InterPro:IPR018609); Has 13303
Blast hits to 9618 proteins in 489 species: Archae - 8;
Bacteria - 444; Metazoa - 7153; Fungi - 2294; Plants - 942;
Viruses - 128; Other Eukaryotes - 2334 (source: NCBI
BLink).		 -0.56 0.33 -0.32
47 AT1G73760 RING/U-box superfamily protein -0.56 0.31 -0.32
48 AT4G19660 NPR1-like protein 4 ATNPR4, NPR1-like protein 4 0.55 0.29 -0.31
49 AT5G67470 formin homolog 6 ARABIDOPSIS FORMIN HOMOLOG 6,
formin homolog 6		 -0.55 0.31 -0.34
50 AT2G30800 helicase in vascular tissue and tapetum ATVT-1, helicase in vascular
tissue and tapetum		 -0.55 0.31 -0.3
51 AT3G03250 UDP-GLUCOSE PYROPHOSPHORYLASE 1 UDP-GLUCOSE PYROPHOSPHORYLASE 1,
UDP-glucose pyrophosphorylase,
UDP-GLUCOSE PYROPHOSPHORYLASE 1		 -0.55 0.3 -0.31
52 AT5G41170 Pentatricopeptide repeat (PPR-like) superfamily protein -0.55 0.29 -0.32
53 AT1G08170 Histone superfamily protein -0.55 0.32 -0.32
54 AT5G52580 RabGAP/TBC domain-containing protein -0.55 0.31 -0.3
55 AT5G02590 Tetratricopeptide repeat (TPR)-like superfamily protein -0.55 0.31 -0.29
56 AT2G07360 SH3 domain-containing protein -0.55 0.34 -0.34
57 AT3G12570 FYD FYD -0.55 0.33 -0.32
58 AT5G49120 Protein of unknown function (DUF581) 0.55 0.32 -0.31
59 AT1G18830 Transducin/WD40 repeat-like superfamily protein -0.54 0.3 -0.31
60 AT1G61130 serine carboxypeptidase-like 32 serine carboxypeptidase-like 32 0.54 0.32 -0.32
61 AT4G19670 RING/U-box superfamily protein 0.54 0.32 -0.33
62 AT4G14160 Sec23/Sec24 protein transport family protein -0.54 0.31 -0.32
63 AT1G77910 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.54 0.3 -0.33
64 AT1G47240 NRAMP metal ion transporter 2 ATNRAMP2, NRAMP metal ion
transporter 2		 -0.54 0.32 -0.32
65 AT1G18660 zinc finger (C3HC4-type RING finger) family protein -0.54 0.31 -0.3
66 AT1G54120 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G14060.1); Has 23 Blast hits
to 23 proteins in 7 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.54 0.31 -0.32
67 AT2G01670 nudix hydrolase homolog 17 nudix hydrolase homolog 17, nudix
hydrolase homolog 17		 0.54 0.3 -0.33
68 AT5G46460 Pentatricopeptide repeat (PPR) superfamily protein -0.54 0.33 -0.33
69 AT3G56440 homolog of yeast autophagy 18 (ATG18) D homolog of yeast autophagy 18
(ATG18) D, homolog of yeast
autophagy 18 (ATG18) D		 0.53 0.33 -0.29
70 AT2G39090 tetratricopeptide repeat (TPR)-containing protein anaphase-promoting complex 7,
AtAPC7		 0.53 0.32 -0.3
71 AT4G10240 B-box zinc finger family protein -0.53 0.31 -0.31
72 AT1G34770 CONTAINS InterPro DOMAIN/s: MAGE protein
(InterPro:IPR002190); Has 1274 Blast hits to 1260 proteins
in 85 species: Archae - 0; Bacteria - 0; Metazoa - 1104;
Fungi - 45; Plants - 49; Viruses - 0; Other Eukaryotes - 76
(source: NCBI BLink).		 0.53 0.31 -0.31
73 AT5G04240 Zinc finger (C2H2 type) family protein / transcription
factor jumonji (jmj) family protein		 EARLY FLOWERING 6 -0.53 0.3 -0.32
74 AT4G01190 phosphatidylinositol phosphate kinase 10 phosphatidylinositol phosphate
kinase 10, phosphatidylinositol
phosphate kinase 10		 0.52 0.34 -0.3
75 AT4G39570 Galactose oxidase/kelch repeat superfamily protein 0.52 0.3 -0.3
76 AT4G25410 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 0.51 0.34 -0.29
77 AT5G60350 unknown protein; Has 110 Blast hits to 97 proteins in 36
species: Archae - 0; Bacteria - 10; Metazoa - 39; Fungi -
2; Plants - 5; Viruses - 0; Other Eukaryotes - 54 (source:
NCBI BLink).		 0.51 0.33 -0.3
78 AT1G49810 Na+/H+ antiporter 2 Na+/H+ antiporter 2, Na+/H+
antiporter 2, SODIUM:HYDROGEN
ANTIPORTER 2		 0.51 0.31 -0.32
79 AT5G13700 polyamine oxidase 1 APAO, polyamine oxidase 1,
polyamine oxidase 1		 0.51 0.31 -0.3
80 AT4G18000 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.51 0.31 -0.34
81 AT1G54420 unknown protein; Has 9 Blast hits to 7 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 3; Viruses - 0; Other Eukaryotes - 6 (source: NCBI
BLink).		 0.51 0.31 -0.31
82 AT2G06010 OBP3-responsive gene 4 OBP3-responsive gene 4 0.51 0.33 -0.33
83 AT5G35960 Protein kinase family protein 0.5 0.32 -0.29
84 AT1G17545 Protein phosphatase 2C family protein 0.5 0.31 -0.33
85 AT3G58890 RNI-like superfamily protein 0.49 0.32 -0.31
86 AT5G23380 Protein of unknown function (DUF789) 0.49 0.3 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
87 C0215 PR_MST_2527.1 - - - -0.67 0.41 -0.46