AT1G22280 : phytochrome-associated protein phosphatase type 2C.....
Query Information
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AGICode AT1G22280
Description phytochrome-associated protein phosphatase type 2C
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G22280 phytochrome-associated protein phosphatase type 2C phytochrome-associated protein
phosphatase type 2C		 1 0.3 -0.34
2 AT2G30140 UDP-Glycosyltransferase superfamily protein 0.86 0.33 -0.32
3 AT1G72900 Toll-Interleukin-Resistance (TIR) domain-containing protein 0.84 0.29 -0.32
4 AT1G78410 VQ motif-containing protein 0.83 0.31 -0.32
5 AT5G63880 SNF7 family protein VPS20.1 0.83 0.3 -0.34
6 AT5G20230 blue-copper-binding protein blue-copper-binding protein, BLUE
COPPER BINDING PROTEIN,
blue-copper-binding protein,
SENESCENCE ASSOCIATED GENE 14		 0.83 0.32 -0.31
7 AT5G61640 peptidemethionine sulfoxide reductase 1 ARABIDOPSIS THALIANA METHIONINE
SULFOXIDE REDUCTASE A1,
peptidemethionine sulfoxide
reductase 1		 0.82 0.32 -0.32
8 AT4G35110 Arabidopsis phospholipase-like protein (PEARLI 4) family 0.82 0.3 -0.31
9 AT1G14370 protein kinase 2A protein kinase 2A, kinase 1,
PBS1-like 2		 0.81 0.32 -0.29
10 AT5G61530 small G protein family protein / RhoGAP family protein 0.81 0.3 -0.32
11 AT2G34680 Outer arm dynein light chain 1 protein AUXIN-INDUCED IN ROOT CULTURES 9 -0.81 0.33 -0.3
12 AT3G46110 Domain of unknown function (DUF966) 0.81 0.33 -0.29
13 AT3G54150 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.8 0.32 -0.33
14 AT4G37370 cytochrome P450, family 81, subfamily D, polypeptide 8 cytochrome P450, family 81,
subfamily D, polypeptide 8		 0.8 0.31 -0.34
15 AT3G61980 serine protease inhibitor, Kazal-type family protein 0.8 0.3 -0.33
16 AT2G39725 LYR family of Fe/S cluster biogenesis protein 0.8 0.3 -0.31
17 AT3G19010 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 0.8 0.32 -0.31
18 AT5G42050 DCD (Development and Cell Death) domain protein 0.8 0.3 -0.32
19 AT4G23190 cysteine-rich RLK (RECEPTOR-like protein kinase) 11 RECEPTOR LIKE PROTEIN KINASE 3,
cysteine-rich RLK (RECEPTOR-like
protein kinase) 11		 0.8 0.3 -0.29
20 AT5G57910 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G30630.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.79 0.33 -0.31
21 AT1G05385 photosystem II 11 kDa protein-related LOW PSII ACCUMULATION 19, Psb27-H1 -0.79 0.35 -0.3
22 AT3G54300 vesicle-associated membrane protein 727 vesicle-associated membrane
protein 727, VAMP727,
vesicle-associated membrane
protein 727		 0.79 0.32 -0.34
23 AT4G32040 KNOTTED1-like homeobox gene 5 KNOTTED1-like homeobox gene 5 0.79 0.31 -0.32
24 AT5G45130 RAB homolog 1 ARABIDOPSIS RAB HOMOLOG F2A,
ATRAB5A, ATRABF2A, RAB HOMOLOG
F2A, RAB5A, RABF2A, RAB homolog 1		 0.79 0.3 -0.32
25 AT2G39560 Putative membrane lipoprotein -0.78 0.31 -0.3
26 AT1G18890 calcium-dependent protein kinase 1 calcium-dependent protein kinase
1, AtCPK10, calcium-dependent
protein kinase 1, CPK10		 0.78 0.31 -0.31
27 AT5G61010 exocyst subunit exo70 family protein E2 exocyst subunit exo70 family
protein E2, exocyst subunit exo70
family protein E2		 0.78 0.31 -0.31
28 AT3G11840 plant U-box 24 plant U-box 24 0.78 0.29 -0.29
29 AT1G50240 Protein kinase family protein with ARM repeat domain FUSED -0.78 0.34 -0.32
30 AT5G03870 Glutaredoxin family protein -0.78 0.31 -0.32
31 AT1G69890 Protein of unknown function (DUF569) 0.78 0.32 -0.31
32 AT3G16260 tRNAse Z4 tRNAse Z4 -0.78 0.3 -0.3
33 AT1G49580 Calcium-dependent protein kinase (CDPK) family protein -0.78 0.33 -0.29
34 AT1G74360 Leucine-rich repeat protein kinase family protein 0.78 0.31 -0.31
35 AT1G11820 O-Glycosyl hydrolases family 17 protein -0.78 0.31 -0.31
36 AT3G19640 magnesium transporter 4 magnesium transporter 4, MRS2-3 0.78 0.32 -0.32
37 AT3G11580 AP2/B3-like transcriptional factor family protein 0.77 0.33 -0.32
38 AT3G19260 LAG1 homologue 2 LONGEVITY ASSURANCE GENE1 HOMOLOG
2, LAG1 homologue 2		 0.77 0.29 -0.32
39 AT3G46740 translocon at the outer envelope membrane of chloroplasts
75-III		 MODIFIER OF ARG1 1, translocon at
the outer envelope membrane of
chloroplasts 75-III		 -0.77 0.33 -0.3
40 AT5G67480 BTB and TAZ domain protein 4 ATBT4, BTB and TAZ domain protein
4		 0.77 0.33 -0.3
41 AT3G20260 Protein of unknown function (DUF1666) -0.77 0.3 -0.3
42 AT2G37770 NAD(P)-linked oxidoreductase superfamily protein Aldo-keto reductase family 4
member C9, Chloroplastic aldo-keto
reductase		 0.77 0.3 -0.3
43 AT3G18110 Pentatricopeptide repeat (PPR) superfamily protein embryo defective 1270 -0.76 0.29 -0.34
44 AT3G09085 Protein of unknown function (DUF962) 0.76 0.3 -0.32
45 AT1G19920 Pseudouridine synthase/archaeosine transglycosylase-like
family protein		 APS2, ATP SULFURYLASE ARABIDOPSIS
1		 -0.76 0.3 -0.3
46 AT4G19710 aspartate kinase-homoserine dehydrogenase ii ASPARTATE KINASE-HOMOSERINE
DEHYDROGENASE, aspartate
kinase-homoserine dehydrogenase ii		 -0.76 0.31 -0.33
47 AT3G18830 polyol/monosaccharide transporter 5 POLYOL TRANSPORTER 5, ARABIDOPSIS
THALIANA POLYOL/MONOSACCHARIDE
TRANSPORTER 5,
polyol/monosaccharide transporter
5		 0.76 0.31 -0.29
48 AT4G02060 Minichromosome maintenance (MCM2/3/5) family protein MCM7, PROLIFERA -0.76 0.32 -0.31
49 AT3G21300 RNA methyltransferase family protein -0.76 0.31 -0.3
50 AT1G33590 Leucine-rich repeat (LRR) family protein 0.76 0.3 -0.32
51 AT1G33030 O-methyltransferase family protein 0.76 0.32 -0.3
52 AT4G02800 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED
DURING: 9 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G01970.1); Has 3209
Blast hits to 2720 proteins in 308 species: Archae - 13;
Bacteria - 213; Metazoa - 1207; Fungi - 247; Plants - 183;
Viruses - 21; Other Eukaryotes - 1325 (source: NCBI BLink).		 -0.76 0.32 -0.31
53 AT2G36330 Uncharacterised protein family (UPF0497) 0.76 0.33 -0.32
54 AT3G18250 Putative membrane lipoprotein 0.76 0.29 -0.31
55 AT4G22120 ERD (early-responsive to dehydration stress) family protein -0.75 0.32 -0.29
56 AT2G28310 Protein of unknown function (DUF707) -0.75 0.31 -0.32
57 AT1G66880 Protein kinase superfamily protein 0.75 0.3 -0.32
58 AT3G13310 Chaperone DnaJ-domain superfamily protein 0.75 0.33 -0.29
59 AT5G38900 Thioredoxin superfamily protein 0.75 0.32 -0.32
60 AT5G04340 zinc finger of Arabidopsis thaliana 6 C2H2, COLD INDUCED ZINC FINGER
PROTEIN 2, zinc finger of
Arabidopsis thaliana 6		 0.75 0.3 -0.33
61 AT1G16670 Protein kinase superfamily protein 0.75 0.29 -0.33
62 AT4G21190 Pentatricopeptide repeat (PPR) superfamily protein embryo defective 1417 -0.75 0.3 -0.32
63 AT5G22690 Disease resistance protein (TIR-NBS-LRR class) family 0.75 0.31 -0.32
64 AT2G29890 villin-like 1 ATVLN1, villin 1 -0.75 0.31 -0.33
65 AT3G50260 cooperatively regulated by ethylene and jasmonate 1 ATERF#011, cooperatively regulated
by ethylene and jasmonate 1, DREB
AND EAR MOTIF PROTEIN 1		 0.75 0.31 -0.32
66 AT3G26570 phosphate transporter 2;1 ORF02, phosphate transporter 2;1 -0.75 0.31 -0.34
67 AT1G18210 Calcium-binding EF-hand family protein 0.75 0.33 -0.31
68 AT5G27440 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: shoot apex, shoot, flower, seed;
EXPRESSED DURING: petal differentiation and expansion
stage, E expanded cotyledon stage; Has 1807 Blast hits to
1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 -0.75 0.31 -0.31
69 AT1G79590 syntaxin of plants 52 ATSYP52, syntaxin of plants 52 0.75 0.31 -0.32
70 AT1G29060 Target SNARE coiled-coil domain protein 0.75 0.33 -0.29
71 AT2G43320 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.75 0.32 -0.33
72 AT1G11050 Protein kinase superfamily protein 0.75 0.3 -0.29
73 AT5G25540 CTC-interacting domain 6 CTC-interacting domain 6 0.74 0.32 -0.31
74 AT4G34390 extra-large GTP-binding protein 2 extra-large GTP-binding protein 2 0.74 0.33 -0.3
75 AT2G23270 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: stem, sperm cell, root,
stamen; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT4G37290.1); Has 36 Blast hits to 35 proteins in 6
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.74 0.33 -0.33
76 AT2G27060 Leucine-rich repeat protein kinase family protein -0.74 0.3 -0.3
77 AT3G03610 ELMO/CED-12 family protein 0.74 0.33 -0.3
78 AT5G16720 Protein of unknown function, DUF593 -0.74 0.31 -0.3
79 AT1G34355 forkhead-associated (FHA) domain-containing protein PARALLEL SPINDLE 1, PARALLEL
SPINDLE 1		 -0.74 0.32 -0.3
80 AT3G56330 N2,N2-dimethylguanosine tRNA methyltransferase -0.74 0.31 -0.31
81 AT5G20130 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.74 0.32 -0.31
82 AT3G57700 Protein kinase superfamily protein 0.74 0.33 -0.31
83 AT4G35480 RING-H2 finger A3B RING-H2 finger A3B 0.74 0.32 -0.3
84 AT3G13430 RING/U-box superfamily protein 0.74 0.33 -0.3
85 AT2G41820 Leucine-rich repeat protein kinase family protein -0.74 0.31 -0.33
86 AT2G31320 poly(ADP-ribose) polymerase 2 ATPARP2, poly(ADP-ribose)
polymerase 2		 -0.74 0.31 -0.32
87 AT1G32630 unknown protein; Has 18 Blast hits to 18 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2;
Plants - 12; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 0.74 0.33 -0.32
88 AT1G69200 fructokinase-like 2 fructokinase-like 2 -0.74 0.33 -0.3
89 AT4G13990 Exostosin family protein -0.74 0.31 -0.32
90 AT5G27420 carbon/nitrogen insensitive 1 ATL31, carbon/nitrogen insensitive
1		 0.74 0.31 -0.31
91 AT5G16880 Target of Myb protein 1 0.74 0.35 -0.34
92 AT1G03740 Protein kinase superfamily protein 0.74 0.32 -0.29
93 AT4G39120 myo-inositol monophosphatase like 2 HISTIDINE BIOSYNTHESIS 7,
myo-inositol monophosphatase like
2		 -0.73 0.31 -0.32
94 AT5G61420 myb domain protein 28 AtMYB28, HIGH ALIPHATIC
GLUCOSINOLATE 1, myb domain
protein 28, PRODUCTION OF
METHIONINE-DERIVED GLUCOSINOLATE 1		 -0.73 0.31 -0.31
95 AT1G77720 putative protein kinase 1 putative protein kinase 1 -0.73 0.34 -0.32
96 AT3G04450 Homeodomain-like superfamily protein -0.73 0.35 -0.3
97 AT1G60600 UbiA prenyltransferase family protein ABERRANT CHLOROPLAST DEVELOPMENT 4 -0.73 0.32 -0.31
98 AT2G17800 Arabidopsis RAC-like 1 Arabidopsis RAC-like 1, ATGP2,
ATRAC1, ATROP3, RHO-RELATED
GTPASES FROM PLANTS 3		 -0.73 0.31 -0.3
99 AT3G17360 phragmoplast orienting kinesin 1 phragmoplast orienting kinesin 1 -0.73 0.3 -0.3
100 AT1G10850 Leucine-rich repeat protein kinase family protein -0.72 0.31 -0.33
101 AT1G65010 Plant protein of unknown function (DUF827) -0.72 0.34 -0.32
102 AT3G02450 cell division protein ftsH, putative -0.72 0.32 -0.31
103 AT1G73020 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF590 (InterPro:IPR007632); Has 1198
Blast hits to 1128 proteins in 154 species: Archae - 0;
Bacteria - 0; Metazoa - 809; Fungi - 158; Plants - 25;
Viruses - 0; Other Eukaryotes - 206 (source: NCBI BLink).		 -0.72 0.31 -0.29
104 AT2G45150 cytidinediphosphate diacylglycerol synthase 4 cytidinediphosphate diacylglycerol
synthase 4		 -0.72 0.31 -0.31
105 AT2G14530 TRICHOME BIREFRINGENCE-LIKE 13 TRICHOME BIREFRINGENCE-LIKE 13 -0.72 0.33 -0.32
106 AT5G55820 CONTAINS InterPro DOMAIN/s: Inner centromere protein,
ARK-binding region (InterPro:IPR005635); Has 1807 Blast
hits to 1807 proteins in 277 species: Archae - 0; Bacteria
- 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 WYRD -0.71 0.31 -0.29
107 AT5G17160 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G03130.1); Has 14330 Blast
hits to 10381 proteins in 896 species: Archae - 94;
Bacteria - 2881; Metazoa - 4019; Fungi - 1576; Plants -
515; Viruses - 110; Other Eukaryotes - 5135 (source: NCBI
BLink).		 -0.71 0.32 -0.31
108 AT5G52010 C2H2-like zinc finger protein -0.71 0.33 -0.33
109 AT1G77470 replication factor C subunit 3 EMBRYO DEFECTIVE 2810, replication
factor C subunit 3, replication
factor C 5		 -0.71 0.29 -0.31
110 AT1G09450 Protein kinase superfamily protein AtHaspin, Haspin-related gene -0.71 0.31 -0.31
111 AT4G01730 DHHC-type zinc finger family protein -0.71 0.31 -0.31
112 AT5G27620 cyclin H;1 cyclin H;1 -0.71 0.31 -0.33
113 AT1G76630 Tetratricopeptide repeat (TPR)-like superfamily protein -0.71 0.31 -0.33
114 AT2G28050 Pentatricopeptide repeat (PPR) superfamily protein -0.71 0.29 -0.32
115 AT1G03780 targeting protein for XKLP2 AtTPX2, targeting protein for
XKLP2		 -0.7 0.33 -0.32
116 AT3G06030 NPK1-related protein kinase 3 NPK1-related protein kinase 3,
AtANP3, MAPKKK12, NPK1-related
protein kinase 3		 -0.7 0.34 -0.34
117 AT4G37490 CYCLIN B1;1 CYCLIN 1, CYCB1, CYCLIN B1;1 -0.7 0.3 -0.32
118 AT5G63920 topoisomerase 3alpha AtTOP3alpha, topoisomerase 3alpha -0.7 0.33 -0.3
119 AT4G38780 Pre-mRNA-processing-splicing factor -0.69 0.32 -0.34
120 AT1G64260 MuDR family transposase -0.69 0.31 -0.3
121 AT3G51290 Protein of unknown function (DUF630) ;Protein of unknown
function (DUF632)		 -0.69 0.31 -0.29
122 AT3G02060 DEAD/DEAH box helicase, putative -0.69 0.31 -0.31
123 AT2G37450 nodulin MtN21 /EamA-like transporter family protein -0.69 0.31 -0.29
124 AT2G26050 Protein of unknown function (DUF1644) -0.69 0.33 -0.31
125 AT2G16270 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED
DURING: 9 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G16630.1); Has 1844
Blast hits to 1256 proteins in 271 species: Archae - 6;
Bacteria - 283; Metazoa - 434; Fungi - 153; Plants - 91;
Viruses - 52; Other Eukaryotes - 825 (source: NCBI BLink).		 -0.69 0.32 -0.32
126 AT3G44050 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.69 0.32 -0.33
127 AT3G14730 Pentatricopeptide repeat (PPR) superfamily protein -0.69 0.31 -0.32
128 AT5G64580 AAA-type ATPase family protein EMBRYO DEFECTIVE 3144 -0.69 0.3 -0.32
129 AT1G59540 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 ZCF125 -0.69 0.3 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
130 C0016 S-Adenosylmethionine S-Adenosyl-L-methionine S-Adenosyl-L-methionine ethylene biosynthesis I (plants),
scopoletin biosynthesis,
quercetinsulphates biosynthesis,
siroheme biosynthesis,
gibberellin inactivation II (methylation),
suberin biosynthesis,
volatile benzenoid biosynthesis I (ester formation),
S-adenosyl-L-methionine cycle II,
methylhalides biosynthesis (plants),
S-methylmethionine cycle,
ubiquinol-9 biosynthesis (eukaryotic),
nicotianamine biosynthesis,
methionine biosynthesis II,
spermine biosynthesis,
choline biosynthesis II,
diphthamide biosynthesis,
homogalacturonan biosynthesis,
phosphatidylcholine biosynthesis II,
methylquercetin biosynthesis,
plastoquinol biosynthesis,
chlorophyllide a biosynthesis I,
ferulate and sinapate biosynthesis,
ubiquinol-10 biosynthesis (eukaryotic),
phenylpropanoid biosynthesis,
free phenylpropanoid acid biosynthesis,
seleno-amino acid detoxification and volatilization I,
plant sterol biosynthesis,
lipoate biosynthesis and incorporation I,
methyl indole-3-acetate interconversion,
cyclopropane and cyclopropene fatty acid biosynthesis,
spermidine biosynthesis I,
thiamine biosynthesis II,
methionine salvage pathway,
spermidine hydroxycinnamic acid conjugates biosynthesis,
simple coumarins biosynthesis,
phosphatidylcholine biosynthesis IV,
glutathione-mediated detoxification II,
S-adenosyl-L-methionine biosynthesis,
methionine degradation I (to homocysteine),
phosphatidylcholine biosynthesis III,
phylloquinol biosynthesis,
choline biosynthesis I,
biotin biosynthesis II,
vitamin E biosynthesis 		-0.77 0.45 -0.45 C0016