AT1G33980 : ATUPF3
Query Information
Cytoscape Web will replace the contents of this div with your graph.
AGICode AT1G33980
Description Smg-4/UPF3 family protein
Gene information
Help   
  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G33980 Smg-4/UPF3 family protein ATUPF3, UPF3 1 0.3 -0.32
2 AT1G47420 succinate dehydrogenase 5 succinate dehydrogenase 5 -0.78 0.32 -0.3
3 AT1G47260 gamma carbonic anhydrase 2 APFI, gamma carbonic anhydrase 2 -0.76 0.34 -0.3
4 AT3G19960 myosin 1 myosin 1 0.75 0.33 -0.31
5 AT2G45700 sterile alpha motif (SAM) domain-containing protein 0.73 0.3 -0.29
6 AT2G20820 unknown protein; Has 44 Blast hits to 44 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.72 0.32 -0.31
7 AT1G62820 Calcium-binding EF-hand family protein -0.71 0.3 -0.3
8 AT5G40650 succinate dehydrogenase 2-2 succinate dehydrogenase 2-2 -0.7 0.3 -0.31
9 AT5G15320 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT3G01130.1); Has 64 Blast hits to 64 proteins in 11
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.7 0.31 -0.3
10 AT1G16680 Chaperone DnaJ-domain superfamily protein 0.69 0.33 -0.29
11 AT5G45610 protein dimerizations SENSITIVE TO UV 2 0.69 0.32 -0.31
12 AT5G18800 Cox19-like CHCH family protein -0.69 0.34 -0.31
13 AT1G47250 20S proteasome alpha subunit F2 20S proteasome alpha subunit F2 -0.69 0.33 -0.32
14 AT1G14450 NADH dehydrogenase (ubiquinone)s -0.69 0.32 -0.29
15 AT5G28050 Cytidine/deoxycytidylate deaminase family protein -0.69 0.33 -0.32
16 AT1G03900 non-intrinsic ABC protein 4 ATP-binding cassette I18,
non-intrinsic ABC protein 4,
non-intrinsic ABC protein 4		 -0.68 0.31 -0.32
17 AT3G07480 2Fe-2S ferredoxin-like superfamily protein -0.68 0.31 -0.33
18 AT1G71190 senescence associated gene 18 senescence associated gene 18 -0.68 0.31 -0.33
19 AT1G64700 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 17 plant
structures; EXPRESSED DURING: 11 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT3G61920.1); Has 48 Blast hits to 47 proteins in 7
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.68 0.31 -0.31
20 AT5G40660 ATP12 protein-related -0.68 0.31 -0.34
21 AT5G62575 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED
DURING: 15 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT3G47833.1); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 succinate dehydrogenase 7,
succinate dehydrogenase 7B		 -0.68 0.3 -0.3
22 AT3G19300 Protein kinase superfamily protein 0.68 0.34 -0.3
23 AT5G08530 51 kDa subunit of complex I 51 kDa subunit of complex I -0.67 0.3 -0.34
24 AT5G38630 cytochrome B561-1 cytochrome B561-1, cytochrome
B561-1		 -0.67 0.31 -0.29
25 AT1G70430 Protein kinase superfamily protein 0.67 0.32 -0.33
26 AT5G35930 AMP-dependent synthetase and ligase family protein 0.66 0.3 -0.32
27 AT1G06200 Peptidase S24/S26A/S26B/S26C family protein -0.65 0.31 -0.31
28 AT1G15280 CASC3/Barentsz eIF4AIII binding 0.65 0.31 -0.29
29 AT1G65290 mitochondrial acyl carrier protein 2 mitochondrial acyl carrier protein
2		 -0.65 0.32 -0.32
30 AT4G00585 unknown protein; Has 47 Blast hits to 47 proteins in 22
species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 7;
Plants - 33; Viruses - 0; Other Eukaryotes - 4 (source:
NCBI BLink).		 -0.65 0.34 -0.31
31 AT2G02510 NADH dehydrogenase (ubiquinone)s -0.65 0.33 -0.33
32 AT1G08220 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
mitochondrial proton-transporting ATP synthase complex
assembly; LOCATED IN: mitochondrial inner membrane;
EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7
growth stages; CONTAINS InterPro DOMAIN/s: ATPase assembly
factor ATP10, mitochondria (InterPro:IPR007849); Has 168
Blast hits to 168 proteins in 86 species: Archae - 6;
Bacteria - 0; Metazoa - 2; Fungi - 107; Plants - 30;
Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).		 -0.65 0.34 -0.29
33 AT2G18040 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 peptidylprolyl cis/trans
isomerase, NIMA-interacting 1		 -0.65 0.31 -0.31
34 AT2G40765 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, mitochondrial respiratory chain complex III;
EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15
growth stages; Has 32 Blast hits to 32 proteins in 11
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.65 0.33 -0.31
35 AT5G38150 Plant protein of unknown function (DUF827) plastid movement impaired 15 0.65 0.31 -0.31
36 AT3G54110 plant uncoupling mitochondrial protein 1 ARABIDOPSIS THALIANA PLANT
UNCOUPLING MITOCHONDRIAL PROTEIN
1, ARABIDOPSIS THALIANA UNCOUPLING
PROTEIN 1, plant uncoupling
mitochondrial protein 1, UCP,
UNCOUPLING PROTEIN 1		 -0.65 0.28 -0.33
37 AT5G54280 myosin 2 myosin 2, ARABIDOPSIS THALIANA
MYOSIN 4, ARABIDOPSIS THALIANA
MYOSIN 1		 0.64 0.32 -0.32
38 AT3G62790 NADH-ubiquinone oxidoreductase-related -0.64 0.3 -0.33
39 AT1G76260 DWD (DDB1-binding WD40 protein) hypersensitive to ABA 2 DWD (DDB1-binding WD40 protein)
hypersensitive to ABA 2		 -0.64 0.29 -0.32
40 AT1G35330 RING/U-box superfamily protein -0.64 0.33 -0.31
41 AT1G33400 Tetratricopeptide repeat (TPR)-like superfamily protein tetratricopeptide repeat 9 0.64 0.34 -0.31
42 AT1G74340 dolichol phosphate-mannose biosynthesis regulatory
protein-related		 dolichol phosphate mannose
synthase 2		 -0.64 0.32 -0.31
43 AT4G17330 G2484-1 protein G2484-1 protein, G2484-1 protein 0.64 0.34 -0.3
44 AT5G20500 Glutaredoxin family protein -0.64 0.3 -0.32
45 AT3G62490 transposable element gene 0.64 0.33 -0.33
46 AT1G21580 Zinc finger C-x8-C-x5-C-x3-H type family protein 0.64 0.31 -0.33
47 AT1G58100 TCP family transcription factor TCP domain protein 8 -0.64 0.3 -0.3
48 AT5G06330 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 -0.63 0.29 -0.33
49 AT5G24740 Protein of unknown function (DUF1162) 0.63 0.3 -0.31
50 AT5G47040 lon protease 2 lon protease 2 0.63 0.31 -0.31
51 AT4G10180 light-mediated development protein 1 / deetiolated1 (DET1) ATDET1, DE-ETIOLATED 1, FUSCA 2 0.63 0.32 -0.29
52 AT4G31130 Protein of unknown function (DUF1218) -0.63 0.32 -0.32
53 AT3G47833 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G62575.2); Has 42 Blast hits
to 42 proteins in 12 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 succinate dehydrogenase 7,
succinate dehydrogenase 7A		 -0.63 0.33 -0.32
54 AT4G26410 Uncharacterised conserved protein UCP022280 -0.63 0.32 -0.29
55 AT4G26710 ATPase, V0 complex, subunit E -0.63 0.32 -0.32
56 AT1G73960 TBP-associated factor 2 TBP-associated factor 2 0.63 0.33 -0.32
57 AT5G44800 chromatin remodeling 4 chromatin remodeling 4, PICKLE
RELATED 1		 0.63 0.33 -0.32
58 AT2G30330 GCN5L1 family protein BLOC subunit 1 -0.63 0.3 -0.3
59 AT1G02410 cytochrome c oxidase assembly protein CtaG / Cox11 family -0.63 0.32 -0.34
60 AT3G28480 Oxoglutarate/iron-dependent oxygenase -0.63 0.32 -0.32
61 AT4G30010 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, plastid; EXPRESSED IN: 26 plant structures;
EXPRESSED DURING: 15 growth stages; Has 39 Blast hits to 39
proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.63 0.32 -0.29
62 AT5G05750 DNAJ heat shock N-terminal domain-containing protein -0.62 0.31 -0.3
63 AT4G16450 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: photorespiration; LOCATED IN: mitochondrion,
mitochondrial membrane, mitochondrial respiratory chain
complex I, respiratory chain complex I, membrane; EXPRESSED
IN: 25 plant structures; EXPRESSED DURING: 15 growth
stages; Has 30201 Blast hits to 17322 proteins in 780
species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.62 0.32 -0.32
64 AT3G48680 gamma carbonic anhydrase-like 2 AtCAL2, gamma carbonic
anhydrase-like 2		 -0.62 0.3 -0.3
65 AT4G01790 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein -0.62 0.33 -0.3
66 AT3G53370 S1FA-like DNA-binding protein -0.62 0.32 -0.32
67 AT5G15880 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.62 0.32 -0.31
68 AT3G07000 Cysteine/Histidine-rich C1 domain family protein -0.62 0.32 -0.31
69 AT1G26960 homeobox protein 23 homeobox protein 23, homeobox
protein 23		 -0.62 0.31 -0.32
70 AT5G37055 HIT-type Zinc finger family protein ATSWC6, SERRATED LEAVES AND EARLY
FLOWERING		 -0.62 0.31 -0.32
71 AT5G02260 expansin A9 ATEXP9, expansin A9, ATHEXP ALPHA
1.10, EXP9, expansin A9		 -0.61 0.32 -0.32
72 AT4G39680 SAP domain-containing protein 0.61 0.31 -0.32
73 AT2G28960 Leucine-rich repeat protein kinase family protein -0.61 0.33 -0.33
74 AT5G61220 LYR family of Fe/S cluster biogenesis protein -0.61 0.33 -0.33
75 AT1G73570 HCP-like superfamily protein 0.61 0.33 -0.31
76 AT5G07960 unknown protein; CONTAINS InterPro DOMAIN/s:
Uncharacterised protein family UPF0139
(InterPro:IPR005351); Has 193 Blast hits to 193 proteins in
75 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi
- 0; Plants - 52; Viruses - 0; Other Eukaryotes - 11
(source: NCBI BLink).		 -0.61 0.31 -0.3
77 AT5G08060 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 16 growth stages; Has 42 Blast hits to 42 proteins
in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1
(source: NCBI BLink).		 -0.61 0.31 -0.32
78 AT4G08930 APR-like 6 APR-like 6, APR-like 6 -0.61 0.3 -0.3
79 AT1G15020 quiescin-sulfhydryl oxidase 1 quiescin-sulfhydryl oxidase 1,
QSO2, quiescin-sulfhydryl oxidase
1		 -0.61 0.32 -0.33
80 AT1G73790 Protein of unknown function (DUF3743) -0.61 0.35 -0.33
81 AT4G30996 Protein of unknown function (DUF1068) NA(+)- AND K(+)-SENSITIVE 1 -0.6 0.3 -0.33
82 AT2G33440 RNA-binding (RRM/RBD/RNP motifs) family protein 0.6 0.3 -0.32
83 AT4G29530 Pyridoxal phosphate phosphatase-related protein -0.6 0.31 -0.32
84 AT4G34700 LYR family of Fe/S cluster biogenesis protein AtCIB22, B22 subunit of eukaryotic
mitochondrial Complex I		 -0.6 0.31 -0.3
85 AT1G72020 unknown protein; Has 52 Blast hits to 52 proteins in 18
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.6 0.33 -0.33
86 AT2G18210 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G36500.1); Has 50 Blast hits
to 50 proteins in 7 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.6 0.33 -0.31
87 AT5G23570 XS domain-containing protein / XS zinc finger
domain-containing protein-related		 SUPPRESSOR OF GENE SILENCING 3,
SUPPRESSOR OF GENE SILENCING 3		 0.6 0.33 -0.31
88 AT2G30000 PHF5-like protein -0.6 0.31 -0.34
89 AT4G01850 S-adenosylmethionine synthetase 2 AtSAM2, MAT2, S-adenosylmethionine
synthetase 2, S-ADENOSYLMETHIONINE
SYNTHETASE 2		 -0.6 0.33 -0.31
90 AT2G46540 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, membrane; EXPRESSED IN: 25 plant structures;
EXPRESSED DURING: 16 growth stages; Has 42 Blast hits to 42
proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.6 0.32 -0.32
91 AT5G43000 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
339 (source: NCBI BLink).		 -0.6 0.33 -0.35
92 AT1G52760 lysophospholipase 2 lysophospholipase 2 -0.6 0.3 -0.31
93 AT5G23230 nicotinamidase 2 nicotinamidase 2 -0.6 0.31 -0.32
94 AT4G33360 NAD(P)-binding Rossmann-fold superfamily protein farnesol dehydrogenase -0.6 0.32 -0.29
95 AT2G27980 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc
finger domain		 0.6 0.29 -0.32
96 AT5G02740 Ribosomal protein S24e family protein -0.59 0.31 -0.31
97 AT1G68370 Chaperone DnaJ-domain superfamily protein ALTERED RESPONSE TO GRAVITY 1 -0.59 0.33 -0.31
98 AT4G38920 vacuolar-type H(+)-ATPase C3 vacuolar-type H(+)-ATPase C3,
AVA-P3, vacuolar-type H(+)-ATPase
C3		 -0.59 0.3 -0.31
99 AT3G50180 Plant protein of unknown function (DUF247) -0.59 0.31 -0.3
100 AT5G55160 small ubiquitin-like modifier 2 ATSUMO2, SMALL UBIQUITIN-LIKE
MODIFIER 2, SMALL UBIQUITIN-LIKE
MODIFIER 2, small ubiquitin-like
modifier 2		 -0.59 0.32 -0.33
101 AT1G67230 little nuclei1 CROWDED NUCLEI 1, LITTLE NUCLEI1 0.58 0.34 -0.31
102 AT5G01270 carboxyl-terminal domain (ctd) phosphatase-like 2 ATCPL2, carboxyl-terminal domain
(ctd) phosphatase-like 2		 0.58 0.32 -0.28
103 AT4G01270 RING/U-box superfamily protein 0.57 0.31 -0.3
104 AT5G44030 cellulose synthase A4 cellulose synthase A4, IRREGULAR
XYLEM 5, NWS2		 0.57 0.31 -0.32
105 AT1G26170 ARM repeat superfamily protein 0.57 0.31 -0.31
106 AT1G12260 NAC 007 NAC 007, EMBRYO DEFECTIVE 2749,
NAC 007, VASCULAR RELATED
NAC-DOMAIN PROTEIN 4		 0.57 0.3 -0.33
107 AT5G54090 DNA mismatch repair protein MutS, type 2 0.57 0.31 -0.32
108 AT1G03560 Pentatricopeptide repeat (PPR-like) superfamily protein 0.56 0.32 -0.31