AT1G29880 : -
Query Information
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AGICode AT1G29880
Description glycyl-tRNA synthetase / glycine--tRNA ligase
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G29880 glycyl-tRNA synthetase / glycine--tRNA ligase 1 0.32 -0.32
2 AT5G61970 signal recognition particle-related / SRP-related 0.9 0.29 -0.31
3 AT3G59020 ARM repeat superfamily protein 0.89 0.31 -0.32
4 AT1G29900 carbamoyl phosphate synthetase B carbamoyl phosphate synthetase B,
VENOSA 3		 0.84 0.31 -0.29
5 AT3G25120 Mitochondrial import inner membrane translocase subunit
Tim17/Tim22/Tim23 family protein		 0.83 0.31 -0.31
6 AT3G23940 dehydratase family 0.83 0.31 -0.33
7 AT4G21150 ribophorin II (RPN2) family protein HAPLESS 6 0.83 0.31 -0.31
8 AT4G19210 RNAse l inhibitor protein 2 ATP-binding cassette E2,
ARABIDOPSIS THALIANA RNASE L
INHIBITOR PROTEIN 2, RNAse l
inhibitor protein 2		 0.83 0.3 -0.31
9 AT1G06900 Insulinase (Peptidase family M16) family protein 0.83 0.34 -0.34
10 AT2G20585 nuclear fusion defective 6 NUCLEAR FUSION DEFECTIVE 6 0.82 0.32 -0.32
11 AT1G34020 Nucleotide-sugar transporter family protein 0.81 0.32 -0.31
12 AT2G19480 nucleosome assembly protein 1;2 nucleosome assembly protein 1;2,
NUCLEOSOME/CHROMATIN ASSEMBLY
FACTOR GROUP A 02,
NUCLEOSOME/CHROMATIN ASSEMBLY
FACTOR GROUP A 2		 0.81 0.34 -0.31
13 AT2G23350 poly(A) binding protein 4 poly(A) binding protein 4, POLY(A)
BINDING PROTEIN 4		 0.81 0.32 -0.32
14 AT1G73240 CONTAINS InterPro DOMAIN/s: Nucleoporin protein Ndc1-Nup
(InterPro:IPR019049); Has 36 Blast hits to 36 proteins in
17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi -
0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.8 0.32 -0.32
15 AT1G43690 ubiquitin interaction motif-containing protein 0.8 0.33 -0.32
16 AT1G64370 unknown protein; Has 773 Blast hits to 375 proteins in 118
species: Archae - 0; Bacteria - 97; Metazoa - 421; Fungi -
108; Plants - 31; Viruses - 0; Other Eukaryotes - 116
(source: NCBI BLink).		 -0.8 0.31 -0.33
17 AT1G29940 nuclear RNA polymerase A2 nuclear RNA polymerase A2 0.8 0.3 -0.33
18 AT2G21390 Coatomer, alpha subunit 0.79 0.3 -0.3
19 AT5G05450 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.79 0.33 -0.33
20 AT3G12050 Aha1 domain-containing protein 0.79 0.31 -0.32
21 AT5G47540 Mo25 family protein 0.79 0.33 -0.31
22 AT1G52160 tRNAse Z3 tRNAse Z3 0.79 0.31 -0.33
23 AT4G23540 ARM repeat superfamily protein 0.79 0.32 -0.3
24 AT3G02650 Tetratricopeptide repeat (TPR)-like superfamily protein 0.78 0.31 -0.33
25 AT2G29760 Tetratricopeptide repeat (TPR)-like superfamily protein ORGANELLE TRANSCRIPT PROCESSING 81 0.78 0.31 -0.32
26 AT5G19820 ARM repeat superfamily protein embryo defective 2734 0.78 0.32 -0.32
27 AT1G66070 Translation initiation factor eIF3 subunit 0.77 0.33 -0.32
28 AT3G02350 galacturonosyltransferase 9 galacturonosyltransferase 9 0.77 0.31 -0.31
29 AT2G04030 Chaperone protein htpG family protein HEAT SHOCK PROTEIN 90.5, CR88,
EMBRYO DEFECTIVE 1956, HEAT SHOCK
PROTEIN 88.1, HEAT SHOCK PROTEIN
90.5		 0.77 0.31 -0.29
30 AT2G22125 binding cellulose synthase-interactive
protein 1, POM-POM 2		 0.77 0.31 -0.3
31 AT3G23990 heat shock protein 60 heat shock protein 60, HEAT SHOCK
PROTEIN 60-3B		 0.77 0.33 -0.32
32 AT5G60960 Pentatricopeptide repeat (PPR) superfamily protein PPR protein localized to the
nucleus and mitochondria 1		 0.77 0.32 -0.3
33 AT5G57870 MIF4G domain-containing protein / MA3 domain-containing
protein		 eukaryotic translation Initiation
Factor isoform 4G1		 0.77 0.32 -0.31
34 AT1G42440 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
ribosome biogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22
plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: AARP2CN (InterPro:IPR012948),
Protein of unknown function DUF663 (InterPro:IPR007034);
BEST Arabidopsis thaliana protein match is: P-loop
containing nucleoside triphosphate hydrolases superfamily
protein (TAIR:AT1G06720.1); Has 2741 Blast hits to 2088
proteins in 291 species: Archae - 2; Bacteria - 131;
Metazoa - 833; Fungi - 650; Plants - 171; Viruses - 49;
Other Eukaryotes - 905 (source: NCBI BLink).		 0.77 0.32 -0.33
35 AT1G50920 Nucleolar GTP-binding protein 0.77 0.31 -0.3
36 AT1G60850 DNA-directed RNA polymerase family protein AAC42, ATRPAC42 0.76 0.32 -0.3
37 AT5G57020 myristoyl-CoA:protein N-myristoyltransferase ARABIDOPSIS THALIANA
MYRISTOYL-COA:PROTEIN
N-MYRISTOYLTRANSFERASE,
myristoyl-CoA:protein
N-myristoyltransferase		 0.76 0.28 -0.31
38 AT4G27640 ARM repeat superfamily protein 0.76 0.34 -0.32
39 AT2G18330 AAA-type ATPase family protein 0.76 0.32 -0.33
40 AT5G44320 Eukaryotic translation initiation factor 3 subunit 7
(eIF-3)		 0.76 0.31 -0.27
41 AT1G29470 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.76 0.32 -0.32
42 AT5G20200 nucleoporin-related 0.76 0.31 -0.32
43 AT3G52070 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 23 Blast hits to 23 proteins
in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 -0.76 0.33 -0.3
44 AT4G39530 Tetratricopeptide repeat (TPR)-like superfamily protein 0.76 0.31 -0.33
45 AT1G10950 transmembrane nine 1 AtTMN1, transmembrane nine 1 0.76 0.31 -0.3
46 AT1G01240 unknown protein; INVOLVED IN: N-terminal protein
myristoylation; EXPRESSED IN: 17 plant structures;
EXPRESSED DURING: 11 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G46550.1); Has 95 Blast hits to 78 proteins in 16
species: Archae - 0; Bacteria - 2; Metazoa - 11; Fungi - 0;
Plants - 80; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 -0.76 0.32 -0.32
47 AT2G38960 endoplasmic reticulum oxidoreductins 2 endoplasmic reticulum
oxidoreductins 2, endoplasmic
reticulum oxidoreductins 2		 0.75 0.33 -0.3
48 AT4G31160 DDB1-CUL4 associated factor 1 DDB1-CUL4 associated factor 1 0.75 0.32 -0.33
49 AT4G31210 DNA topoisomerase, type IA, core 0.75 0.32 -0.31
50 AT2G34970 Trimeric LpxA-like enzyme 0.75 0.32 -0.3
51 AT4G13750 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
family protein		 EMBRYO DEFECTIVE 2597, NO VEIN 0.75 0.31 -0.32
52 AT3G27390 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G40640.1); Has 101 Blast
hits to 99 proteins in 12 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.75 0.3 -0.32
53 AT5G36950 DegP protease 10 DegP protease 10 0.75 0.31 -0.32
54 AT1G09780 Phosphoglycerate mutase,
2,3-bisphosphoglycerate-independent		 2,3-biphosphoglycerate-independent
phosphoglycerate mutase 1		 0.75 0.31 -0.31
55 AT2G24050 MIF4G domain-containing protein / MA3 domain-containing
protein		 eukaryotic translation Initiation
Factor isoform 4G2		 0.75 0.3 -0.3
56 AT5G61780 TUDOR-SN protein 2 Arabidopsis thaliana TUDOR-SN
protein 2, TUDOR-SN protein 2,
TUDOR-SN protein 2		 0.75 0.31 -0.32
57 AT1G48040 Protein phosphatase 2C family protein 0.75 0.33 -0.3
58 AT5G10840 Endomembrane protein 70 protein family 0.75 0.31 -0.29
59 AT1G26460 Tetratricopeptide repeat (TPR)-like superfamily protein 0.75 0.3 -0.32
60 AT2G31240 Tetratricopeptide repeat (TPR)-like superfamily protein 0.75 0.31 -0.34
61 AT5G05520 Outer membrane OMP85 family protein 0.74 0.31 -0.31
62 AT2G36070 translocase inner membrane subunit 44-2 translocase inner membrane subunit
44-2, translocase inner membrane
subunit 44-2		 0.74 0.31 -0.33
63 AT2G32800 protein kinase family protein AP4.3A -0.74 0.33 -0.31
64 AT4G38710 glycine-rich protein 0.74 0.32 -0.33
65 AT3G17430 Nucleotide-sugar transporter family protein 0.74 0.29 -0.31
66 AT3G57890 Tubulin binding cofactor C domain-containing protein 0.74 0.28 -0.3
67 AT1G63810 CONTAINS InterPro DOMAIN/s: Nrap protein
(InterPro:IPR005554); Has 396 Blast hits to 382 proteins in
182 species: Archae - 3; Bacteria - 2; Metazoa - 142; Fungi
- 146; Plants - 43; Viruses - 0; Other Eukaryotes - 60
(source: NCBI BLink).		 0.73 0.29 -0.31
68 AT1G15510 Tetratricopeptide repeat (TPR)-like superfamily protein ARABIDOPSIS EARLY CHLOROPLAST
BIOGENESIS2, EARLY CHLOROPLAST
BIOGENESIS2, VANILLA CREAM 1		 0.73 0.32 -0.29
69 AT3G62360 Carbohydrate-binding-like fold 0.73 0.34 -0.33
70 AT2G28520 vacuolar proton ATPase A1 vacuolar proton ATPase A1 0.73 0.32 -0.31
71 AT2G05120 Nucleoporin, Nup133/Nup155-like 0.73 0.32 -0.33
72 AT5G62470 myb domain protein 96 MYB DOMAIN PROTEIN 96, myb domain
protein 96, MYBCOV1		 -0.73 0.31 -0.31
73 AT3G19620 Glycosyl hydrolase family protein -0.73 0.29 -0.3
74 AT3G54980 Pentatricopeptide repeat (PPR) superfamily protein 0.73 0.3 -0.32
75 AT3G23430 phosphate 1 ARABIDOPSIS PHOSPHATE 1, phosphate
1		 0.73 0.3 -0.32
76 AT3G52950 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing
protein		 0.73 0.34 -0.33
77 AT1G61640 Protein kinase superfamily protein 0.73 0.32 -0.33
78 AT5G45630 Protein of unknown function, DUF584 -0.72 0.32 -0.31
79 AT3G61240 DEA(D/H)-box RNA helicase family protein 0.72 0.34 -0.32
80 AT3G15790 methyl-CPG-binding domain 11 ATMBD11, methyl-CPG-binding domain
11		 -0.72 0.33 -0.31
81 AT1G03830 guanylate-binding family protein 0.72 0.31 -0.33
82 AT5G35700 fimbrin-like protein 2 fimbrin-like protein 2, FIMBRIN5 0.72 0.31 -0.3
83 AT3G26370 O-fucosyltransferase family protein 0.72 0.31 -0.32
84 AT3G07060 NHL domain-containing protein embryo defective 1974 0.72 0.31 -0.31
85 AT4G27010 CONTAINS InterPro DOMAIN/s: Ribosome 60S biogenesis
N-terminal (InterPro:IPR021714); BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G72270.1); Has
30201 Blast hits to 17322 proteins in 780 species: Archae -
12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 EMBRYO DEFECTIVE 2788 0.72 0.33 -0.32
86 AT1G22730 MA3 domain-containing protein 0.72 0.29 -0.32
87 AT1G70590 F-box family protein -0.72 0.29 -0.33
88 AT4G23640 Potassium transporter family protein ATKT3, KUP4, TINY ROOT HAIR 1 0.72 0.3 -0.33
89 AT1G09620 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA
ligases;nucleotide binding;ATP binding;aminoacyl-tRNA
ligases		 0.72 0.34 -0.31
90 AT2G39450 Cation efflux family protein ATMTP11, MTP11 -0.72 0.29 -0.32
91 AT1G71460 Pentatricopeptide repeat (PPR-like) superfamily protein 0.72 0.31 -0.3
92 AT5G66250 kinectin-related -0.71 0.32 -0.3
93 AT5G49710 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G24590.1); Has 35333 Blast
hits to 34131 proteins in 2444 species: Archae - 798;
Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531;
Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).		 -0.7 0.32 -0.32
94 AT4G33810 Glycosyl hydrolase superfamily protein -0.7 0.34 -0.3
95 AT1G70420 Protein of unknown function (DUF1645) -0.7 0.31 -0.31
96 AT2G40410 Staphylococcal nuclease homologue -0.7 0.32 -0.3
97 AT3G19790 unknown protein; Has 32 Blast hits to 26 proteins in 8
species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 2;
Plants - 14; Viruses - 0; Other Eukaryotes - 3 (source:
NCBI BLink).		 -0.7 0.29 -0.34
98 AT5G37680 ADP-ribosylation factor-like A1A ADP-ribosylation factor-like A1A,
ADP-ribosylation factor-like A1A		 -0.7 0.31 -0.3
99 AT5G57040 Lactoylglutathione lyase / glyoxalase I family protein -0.7 0.3 -0.33
100 AT5G06480 Immunoglobulin E-set superfamily protein -0.69 0.33 -0.29
101 AT4G14500 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 -0.69 0.32 -0.33
102 AT1G50740 Transmembrane proteins 14C -0.69 0.32 -0.32
103 AT1G19970 ER lumen protein retaining receptor family protein -0.69 0.32 -0.33
104 AT4G28400 Protein phosphatase 2C family protein -0.69 0.29 -0.34
105 AT1G08040 Protein of unknown function (DUF707) -0.69 0.32 -0.32
106 AT3G10940 dual specificity protein phosphatase (DsPTP1) family
protein		 LIKE SEX4 2 -0.68 0.3 -0.32
107 AT3G14067 Subtilase family protein -0.68 0.32 -0.32
108 AT5G24750 UDP-Glycosyltransferase superfamily protein -0.68 0.33 -0.31
109 AT2G42950 Magnesium transporter CorA-like family protein -0.68 0.31 -0.31
110 AT5G40440 mitogen-activated protein kinase kinase 3 mitogen-activated protein kinase
kinase 3, mitogen-activated
protein kinase kinase 3		 -0.67 0.3 -0.34
111 AT3G59530 Calcium-dependent phosphotriesterase superfamily protein LESS ADHERENT POLLEN 3 -0.67 0.31 -0.3
112 AT5G63080 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.67 0.32 -0.32
113 AT5G01880 RING/U-box superfamily protein -0.67 0.32 -0.3
114 AT4G10250 HSP20-like chaperones superfamily protein ATHSP22.0 -0.66 0.31 -0.31
115 AT3G02480 Late embryogenesis abundant protein (LEA) family protein -0.66 0.29 -0.29
116 AT4G09600 GAST1 protein homolog 3 GAST1 protein homolog 3 -0.66 0.31 -0.32
117 AT5G63200 tetratricopeptide repeat (TPR)-containing protein -0.66 0.31 -0.32
118 AT1G12680 phosphoenolpyruvate carboxylase-related kinase 2 phosphoenolpyruvate
carboxylase-related kinase 2		 -0.66 0.31 -0.31
119 AT1G28070 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G33510.1); Has 85 Blast hits
to 77 proteins in 15 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.65 0.31 -0.31
120 AT4G30630 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G57910.1); Has 33 Blast hits
to 33 proteins in 10 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.64 0.29 -0.32
121 AT1G17790 DNA-binding bromodomain-containing protein -0.64 0.31 -0.31
122 AT1G22985 Integrase-type DNA-binding superfamily protein cytokinin response factor 7 -0.64 0.32 -0.35
123 AT2G15042 Leucine-rich repeat (LRR) family protein -0.63 0.29 -0.32
124 AT1G60190 ARM repeat superfamily protein AtPUB19, plant U-box 19 -0.63 0.31 -0.34
125 AT4G22360 SWIB complex BAF60b domain-containing protein -0.63 0.31 -0.32
126 AT3G20550 SMAD/FHA domain-containing protein DAWDLE -0.63 0.3 -0.3
127 AT1G61660 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 -0.63 0.3 -0.32
128 AT3G01590 Galactose mutarotase-like superfamily protein -0.63 0.31 -0.29
129 AT5G66670 Protein of unknown function (DUF677) -0.63 0.31 -0.32
130 AT2G32510 mitogen-activated protein kinase kinase kinase 17 mitogen-activated protein kinase
kinase kinase 17		 -0.63 0.31 -0.32
131 AT1G41810 transposable element gene -0.62 0.3 -0.32
132 AT3G13140 hydroxyproline-rich glycoprotein family protein -0.62 0.33 -0.31
133 AT2G20770 GCR2-like 2 GCR2-like 2 -0.62 0.31 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
134 C0109 Guanine - Guanine guanine and guanosine salvage II,
guanosine nucleotides degradation II 		-0.79 0.43 -0.46 C0109
135 C0030 3-Methylsulfinyl-n-propylglucosinolate - 3-Methylsulfinylpropyl-glucosinolate glucosinolate biosynthesis from homomethionine -0.69 0.45 -0.42 C0030
136 C0107 Glycine - Glycine 5-aminoimidazole ribonucleotide biosynthesis I,
gamma-glutamyl cycle,
folate polyglutamylation,
gamma-glutamyl cycle (plant pathway),
glutathione biosynthesis,
glutathione-mediated detoxification II,
folate transformations II,
indole glucosinolate breakdown (active in intact plant cell),
glycine cleavage complex,
camalexin biosynthesis,
thiamine biosynthesis II,
tRNA charging,
glycine biosynthesis,
glutathione degradation,
photorespiration 		-0.68 0.41 -0.41 C0107
137 C0097 Glucosamine-6-phosphate D-Glucosamine-6-phosphate D-Glucosamine-6-phosphate UDP-N-acetyl-D-glucosamine biosynthesis II -0.63 0.32 -0.31 C0097