AT3G12440 : -
Query Information
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AGICode AT3G12440
Description Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G12440 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 1 0.32 -0.34
2 AT1G35995 transposable element gene -0.76 0.3 -0.31
3 AT4G30300 non-intrinsic ABC protein 15 ATP-binding cassette E3,
ARABIDOPSIS THALIANA NON-INTRINSIC
ABC PROTEIN 15, non-intrinsic ABC
protein 15		 0.76 0.31 -0.32
4 AT3G57970 Emsy N Terminus (ENT)/ plant Tudor-like domains-containing
protein		 -0.75 0.3 -0.34
5 AT5G12450 FBD-like domain family protein 0.74 0.31 -0.33
6 AT4G03640 transposable element gene 0.73 0.32 -0.33
7 AT4G20200 Terpenoid cyclases/Protein prenyltransferases superfamily
protein		 0.73 0.32 -0.34
8 AT1G43140 Cullin family protein 0.72 0.32 -0.31
9 AT4G30590 early nodulin-like protein 12 AtENODL12, early nodulin-like
protein 12		 0.72 0.33 -0.3
10 AT1G43020 Protein of unknown function, DUF547 0.72 0.29 -0.31
11 AT5G49440 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.72 0.34 -0.3
12 AT3G61530 Phosphoenolpyruvate carboxylase family protein PANB2 -0.72 0.33 -0.33
13 AT3G01380 transferases;sulfuric ester
hydrolases;catalytics;transferases		 0.72 0.33 -0.33
14 AT5G42690 Protein of unknown function, DUF547 0.71 0.29 -0.32
15 AT1G20550 O-fucosyltransferase family protein 0.71 0.3 -0.36
16 AT2G06820 transposable element gene 0.7 0.33 -0.32
17 AT5G11360 Interleukin-1 receptor-associated kinase 4 protein 0.7 0.31 -0.31
18 AT3G03080 Zinc-binding dehydrogenase family protein 0.7 0.33 -0.31
19 AT1G14070 fucosyltransferase 7 fucosyltransferase 7 0.7 0.32 -0.32
20 AT4G20470 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.7 0.32 -0.31
21 AT3G13820 F-box and associated interaction domains-containing protein 0.7 0.34 -0.31
22 AT2G30925 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.7 0.32 -0.32
23 AT1G76290 AMP-dependent synthetase and ligase family protein 0.7 0.34 -0.32
24 AT1G45545 Plant protein of unknown function (DUF827) 0.7 0.31 -0.31
25 AT4G03040 BEST Arabidopsis thaliana protein match is: Polynucleotidyl
transferase, ribonuclease H-like superfamily protein
(TAIR:AT5G33330.1); Has 18 Blast hits to 18 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.69 0.32 -0.29
26 AT1G54280 ATPase E1-E2 type family protein / haloacid
dehalogenase-like hydrolase family protein		 0.69 0.32 -0.3
27 AT5G09310 CONTAINS InterPro DOMAIN/s: Gamma-secretase aspartyl
protease complex, presenilin enhancer-2 subunit
(InterPro:IPR019379); Has 168 Blast hits to 168 proteins in
71 species: Archae - 0; Bacteria - 0; Metazoa - 126; Fungi
- 0; Plants - 36; Viruses - 0; Other Eukaryotes - 6
(source: NCBI BLink).		 -0.69 0.33 -0.31
28 AT5G48270 Plant protein of unknown function (DUF868) 0.69 0.34 -0.32
29 AT3G45440 Concanavalin A-like lectin protein kinase family protein 0.68 0.33 -0.31
30 AT5G13150 exocyst subunit exo70 family protein C1 exocyst subunit exo70 family
protein C1, exocyst subunit exo70
family protein C1		 0.68 0.31 -0.34
31 AT5G12460 Protein of unknown function (DUF604) 0.68 0.31 -0.31
32 AT1G59790 Cullin family protein 0.68 0.32 -0.31
33 AT3G19880 F-box and associated interaction domains-containing protein 0.67 0.32 -0.32
34 AT3G42790 alfin-like 3 alfin-like 3 -0.67 0.31 -0.33
35 AT3G21100 RNA-binding (RRM/RBD/RNP motifs) family protein 0.67 0.31 -0.34
36 AT3G54270 sucrose-6F-phosphate phosphohydrolase family protein 0.67 0.29 -0.3
37 AT5G37620 Cysteine/Histidine-rich C1 domain family protein 0.67 0.32 -0.33
38 AT5G08440 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 21 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G23490.1); Has 141 Blast
hits to 139 proteins in 35 species: Archae - 0; Bacteria -
9; Metazoa - 21; Fungi - 6; Plants - 94; Viruses - 0; Other
Eukaryotes - 11 (source: NCBI BLink).		 0.67 0.31 -0.28
39 AT1G67710 response regulator 11 response regulator 11 0.67 0.32 -0.32
40 AT3G46390 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G32337.1); Has 5 Blast hits to
5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.67 0.32 -0.33
41 AT1G50160 BEST Arabidopsis thaliana protein match is: Polynucleotidyl
transferase, ribonuclease H-like superfamily protein
(TAIR:AT2G04420.1); Has 34 Blast hits to 34 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.67 0.3 -0.31
42 AT2G10610 transposable element gene 0.67 0.31 -0.32
43 AT3G46960 RNA helicase, ATP-dependent, SK12/DOB1 protein 0.67 0.31 -0.32
44 AT1G16710 histone acetyltransferase of the CBP family 12 histone acetyltransferase of the
CBP family 12		 0.66 0.33 -0.33
45 AT5G22420 fatty acid reductase 7 fatty acid reductase 7 -0.66 0.31 -0.31
46 AT1G74220 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: male gametophyte, flower, pollen
tube; EXPRESSED DURING: L mature pollen stage, M germinated
pollen stage, 4 anthesis; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G03630.1); Has 383 Blast
hits to 347 proteins in 86 species: Archae - 0; Bacteria -
17; Metazoa - 87; Fungi - 65; Plants - 76; Viruses - 2;
Other Eukaryotes - 136 (source: NCBI BLink).		 -0.66 0.33 -0.31
47 AT1G57780 heavy-metal-associated domain-containing protein -0.66 0.32 -0.33
48 AT4G07380 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.66 0.3 -0.3
49 AT4G05500 pseudogene, F-box protein family, AtFBL9/AtFBL23, contains
similarity to N7 protein GI:3273101 from (Medicago
truncatula); blastp match of 39% identity and 1.6e-34
P-value to GP|3273101|emb|CAA76808.1||Y17613 N7 protein
{Medicago truncatula}		 0.66 0.32 -0.31
50 AT1G70180 Sterile alpha motif (SAM) domain-containing protein 0.66 0.33 -0.32
51 AT2G36670 Eukaryotic aspartyl protease family protein 0.66 0.32 -0.33
52 AT2G23800 geranylgeranyl pyrophosphate synthase 2 geranylgeranyl pyrophosphate
synthase 2, GERANYLGERANYL
PYROPHOSPHATE SYNTHASE 5		 -0.66 0.3 -0.33
53 AT5G05260 cytochrome p450 79a2 cytochrome p450 79a2 0.66 0.32 -0.33
54 AT2G37360 ABC-2 type transporter family protein ATP-binding cassette G2 0.66 0.32 -0.31
55 AT2G30650 ATP-dependent caseinolytic (Clp) protease/crotonase family
protein		 -0.66 0.32 -0.31
56 AT1G61750 Receptor-like protein kinase-related family protein -0.65 0.31 -0.33
57 AT2G44810 alpha/beta-Hydrolases superfamily protein DEFECTIVE ANTHER DEHISCENCE 1 0.65 0.32 -0.32
58 AT1G64920 UDP-Glycosyltransferase superfamily protein 0.65 0.33 -0.32
59 AT2G37320 Tetratricopeptide repeat (TPR)-like superfamily protein -0.64 0.3 -0.33
60 AT3G49760 basic leucine-zipper 5 basic leucine-zipper 5, basic
leucine-zipper 5		 0.64 0.31 -0.34
61 AT5G46500 BEST Arabidopsis thaliana protein match is: disease
resistance protein (TIR-NBS-LRR class) family
(TAIR:AT5G46260.1); Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.64 0.31 -0.33
62 AT5G39870 Protein of unknown function (DUF1216) 0.64 0.31 -0.31
63 AT5G55650 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.64 0.31 -0.33
64 AT1G53270 ABC-2 type transporter family protein ATP-binding cassette G10 0.64 0.32 -0.34
65 AT3G10590 Duplicated homeodomain-like superfamily protein -0.64 0.32 -0.32
66 AT2G34180 CBL-interacting protein kinase 13 WPL4-LIKE 2, CBL-interacting
protein kinase 13, SNF1-RELATED
PROTEIN KINASE 3.7, WPL4-LIKE 2		 -0.64 0.33 -0.34
67 AT3G49480 Protein with RNI-like/FBD-like domains -0.64 0.33 -0.33
68 AT2G15610 Protein of unknown function (DUF1685) 0.64 0.3 -0.31
69 AT4G38170 FAR1-related sequence 9 FAR1-related sequence 9 0.64 0.34 -0.32
70 AT1G27160 valyl-tRNA synthetase / valine--tRNA ligase-related -0.64 0.31 -0.33
71 AT5G28620 protein kinase C-related -0.64 0.31 -0.31
72 AT1G61430 S-locus lectin protein kinase family protein -0.64 0.35 -0.31
73 AT5G44800 chromatin remodeling 4 chromatin remodeling 4, PICKLE
RELATED 1		 0.64 0.31 -0.32
74 AT4G21500 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G05018.1); Has 20 Blast
hits to 20 proteins in 8 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other
Eukaryotes - 3 (source: NCBI BLink).		 -0.64 0.3 -0.31
75 AT5G07680 NAC domain containing protein 80 Arabidopsis NAC domain containing
protein 79, NAC domain containing
protein 80, ATNAC4, NAC domain
containing protein 80		 0.64 0.31 -0.33
76 AT3G20400 F-box associated ubiquitination effector family protein EMBRYO DEFECTIVE 2743 0.64 0.32 -0.31
77 AT1G54140 TATA binding protein associated factor 21kDa subunit TBP-ASSOCIATED FACTOR 9, TATA
binding protein associated factor
21kDa subunit		 -0.63 0.31 -0.32
78 AT2G35590 pseudogene, serpin (serine protease inhibitor), putative,
similar to protein zx (Hordeum vulgare subsp. vulgare)
GI:19071, serpin (Triticum aestivum) GI:1885346; contains
Pfam profile PF00079: Serpin (serine protease inhibitor);
this is very likely a pseudogene.; blastp match of 52%
identity and 2.2e-73 P-value to
GP|26224736|gb|AAN76362.1||AY158152 serpin-like protein
{Citrus x paradisi}		 -0.63 0.33 -0.31
79 AT5G50910 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.63 0.32 -0.32
80 AT1G48330 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G17580.1); Has 40 Blast hits
to 40 proteins in 11 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.63 0.34 -0.31
81 AT4G30480 Tetratricopeptide repeat (TPR)-like superfamily protein AtTPR1, tetratricopeptide repeat 1 -0.63 0.3 -0.32
82 AT4G30050 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: leaf whorl, sepal,
flower; EXPRESSED DURING: petal differentiation and
expansion stage; Has 6 Blast hits to 6 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.63 0.32 -0.33
83 AT2G43250 unknown protein; Has 32 Blast hits to 32 proteins in 11
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.63 0.31 -0.31
84 AT3G43130 transposable element gene 0.63 0.34 -0.31
85 AT3G11240 arginine-tRNA protein transferase 2 ATATE2, arginine-tRNA protein
transferase 2		 0.63 0.29 -0.32
86 AT5G01070 RING/FYVE/PHD zinc finger superfamily protein -0.62 0.31 -0.3
87 AT2G15325 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.62 0.28 -0.34
88 AT3G28560 BCS1 AAA-type ATPase -0.62 0.32 -0.32
89 AT5G25430 HCO3- transporter family -0.62 0.33 -0.32
90 AT5G52870 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G64080.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 MEMBRANE-ASSOCIATED KINASE
REGULATOR 5		 -0.61 0.32 -0.29
91 AT2G39240 RNA polymerase I specific transcription initiation factor
RRN3 protein		 -0.61 0.3 -0.3
92 AT2G23270 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: stem, sperm cell, root,
stamen; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT4G37290.1); Has 36 Blast hits to 35 proteins in 6
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.61 0.31 -0.29
93 AT1G43680 BEST Arabidopsis thaliana protein match is: nucleic acid
binding;zinc ion binding (TAIR:AT5G36228.1); Has 59 Blast
hits to 57 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.61 0.32 -0.31
94 AT3G60120 beta glucosidase 27 beta glucosidase 27 -0.61 0.32 -0.33
95 AT3G22700 F-box and associated interaction domains-containing protein -0.61 0.31 -0.32
96 AT1G49100 Leucine-rich repeat protein kinase family protein -0.61 0.33 -0.32
97 AT5G65780 branched-chain amino acid aminotransferase 5 /
branched-chain amino acid transaminase 5 (BCAT5)		 ATBCAT-5 -0.61 0.32 -0.32
98 AT3G47230 transposable element gene -0.6 0.28 -0.32
99 AT1G56610 Protein with RNI-like/FBD-like domains -0.6 0.32 -0.34
100 AT1G36910 transposable element gene -0.6 0.32 -0.32
101 AT3G62890 Pentatricopeptide repeat (PPR) superfamily protein -0.6 0.32 -0.32
102 AT5G17720 alpha/beta-Hydrolases superfamily protein -0.6 0.33 -0.31
103 AT2G45980 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 25 plant
structures; EXPRESSED DURING: 15 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT4G00355.2); Has 93 Blast hits to 90 proteins in 15
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 93; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 ATG8-interacting protein 1 -0.6 0.32 -0.31
104 AT3G45500 BEST Arabidopsis thaliana protein match is: RING/U-box
protein with C6HC-type zinc finger (TAIR:AT3G45580.1); Has
48 Blast hits to 46 proteins in 4 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.6 0.31 -0.34
105 AT5G09630 LisH/CRA/RING-U-box domains-containing protein -0.6 0.3 -0.32
106 AT2G35990 Putative lysine decarboxylase family protein LONELY GUY 2 -0.59 0.32 -0.29
107 AT2G33240 myosin XI D MYOSIN XI D, myosin XI D -0.59 0.3 -0.33
108 AT5G43530 Helicase protein with RING/U-box domain -0.59 0.3 -0.31
109 AT2G43180 Phosphoenolpyruvate carboxylase family protein -0.59 0.32 -0.32
110 AT3G53000 phloem protein 2-A15 phloem protein 2-A15, phloem
protein 2-A15		 -0.58 0.32 -0.32
111 AT2G34330 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G29540.1); Has 10 Blast hits
to 10 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.58 0.31 -0.32
112 AT5G57260 cytochrome P450, family 71, subfamily B, polypeptide 10 cytochrome P450, family 71,
subfamily B, polypeptide 10		 -0.58 0.32 -0.32
113 AT2G15570 Thioredoxin superfamily protein ATHM3, Arabidopsis thioredoxin
M-type 3, GFP ARRESTED TRAFFICKING
1, THIOREDOXIN-M3		 -0.58 0.32 -0.33
114 AT3G61340 F-box and associated interaction domains-containing protein -0.58 0.29 -0.31
115 AT1G52470 alpha/beta-Hydrolases superfamily protein -0.58 0.31 -0.31
116 AT2G33230 YUCCA 7 YUCCA 7 -0.58 0.32 -0.31
117 AT3G19680 Protein of unknown function (DUF1005) -0.58 0.3 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
118 C0087 Erythrose-4-phosphate D-Erythrose-4-phosphate D-Erythrose-4-phosphate Rubisco shunt,
pentose phosphate pathway (non-oxidative branch),
chorismate biosynthesis,
Calvin-Benson-Bassham cycle 		0.76 0.47 -0.4 C0087
119 C0195 Phenylpyruvic acid - Phenylpyruvate phenylalanine degradation III 0.71 0.42 -0.45 C0195
120 C0020 1-Aminocyclopropane-1-carboxylic acid - 1-Aminocyclopropane-1-carboxylate jasmonoyl-amino acid conjugates biosynthesis I,
ethylene biosynthesis I (plants),
methionine salvage pathway 		-0.59 0.42 -0.45 C0020