AT3G12080 : embryo defective 2738
Query Information
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AGICode AT3G12080
Description GTP-binding family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G12080 GTP-binding family protein embryo defective 2738 1 0.29 -0.31
2 AT2G45270 glycoprotease 1 glycoprotease 1 0.91 0.32 -0.32
3 AT4G20130 plastid transcriptionally active 14 plastid transcriptionally active
14		 0.9 0.33 -0.32
4 AT4G20130 plastid transcriptionally active 14 plastid transcriptionally active
14		 0.89 0.31 -0.32
5 AT2G31890 RAP ATRAP, RAP 0.89 0.3 -0.32
6 AT3G51870 Mitochondrial substrate carrier family protein 0.88 0.32 -0.31
7 AT2G30695 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
protein folding, protein transport; LOCATED IN: chloroplast
stroma, chloroplast; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: Trigger factor, ribosome-binding, bacterial
(InterPro:IPR008881); Has 253 Blast hits to 253 proteins in
72 species: Archae - 0; Bacteria - 138; Metazoa - 0; Fungi
- 0; Plants - 40; Viruses - 0; Other Eukaryotes - 75
(source: NCBI BLink).		 0.88 0.33 -0.32
8 AT3G48110 glycine-tRNA ligases EDD, EMBRYO-DEFECTIVE-DEVELOPMENT
1		 0.88 0.29 -0.33
9 AT5G18570 GTP1/OBG family protein ATOBGC, OBG-like protein,
chloroplastic SAR1, EMBRYO
DEFECTIVE 269, EMBRYO DEFECTIVE
3138		 0.88 0.34 -0.32
10 AT5G22640 MORN (Membrane Occupation and Recognition Nexus)
repeat-containing protein		 embryo defective 1211 0.88 0.33 -0.31
11 AT5G16715 ATP binding;valine-tRNA ligases;aminoacyl-tRNA
ligases;nucleotide binding;ATP binding;aminoacyl-tRNA
ligases		 embryo defective 2247 0.88 0.31 -0.32
12 AT2G39140 pseudouridine synthase family protein PIGMENT DEFECTIVE 328, SUPPRESSOR
OF VARIEGATION 1		 0.87 0.28 -0.33
13 AT4G39460 S-adenosylmethionine carrier 1 S-adenosylmethionine carrier 1,
SAM TRANSPORTER1		 0.87 0.29 -0.32
14 AT5G49030 tRNA synthetase class I (I, L, M and V) family protein ovule abortion 2 0.87 0.29 -0.31
15 AT1G02910 tetratricopeptide repeat (TPR)-containing protein LOW PSII ACCUMULATION1 0.86 0.34 -0.33
16 AT3G25660 Amidase family protein 0.86 0.29 -0.31
17 AT1G10510 RNI-like superfamily protein embryo defective 2004 0.86 0.31 -0.31
18 AT2G21385 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 49
Blast hits to 49 proteins in 20 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses
- 0; Other Eukaryotes - 5 (source: NCBI BLink).		 0.86 0.32 -0.31
19 AT1G11870 Seryl-tRNA synthetase ATSRS, ovule abortion 7,
Seryl-tRNA synthetase		 0.85 0.31 -0.3
20 AT3G48500 Nucleic acid-binding, OB-fold-like protein PIGMENT DEFECTIVE 312, PLASTID
TRANSCRIPTIONALLY ACTIVE 10		 0.85 0.33 -0.31
21 AT1G13270 methionine aminopeptidase 1B METHIONINE AMINOPEPTIDASE 1B,
methionine aminopeptidase 1B		 0.85 0.31 -0.31
22 AT4G30720 FAD/NAD(P)-binding oxidoreductase family protein PIGMENT DEFECTIVE 327 0.85 0.31 -0.3
23 AT3G63190 ribosome recycling factor, chloroplast precursor Arabidopsis thaliana chloroplast
ribosome recycling factor,
chloroplast ribosome recycling
factor, HIGH CHLOROPHYLL
FLUORESCENCE AND PALE GREEN MUTANT
108, ribosome recycling factor,
chloroplast precursor		 0.85 0.31 -0.31
24 AT5G08650 Small GTP-binding protein 0.85 0.31 -0.28
25 AT5G63420 RNA-metabolising metallo-beta-lactamase family protein embryo defective 2746 0.84 0.29 -0.33
26 AT3G60750 Transketolase 0.84 0.34 -0.32
27 AT5G47110 Chlorophyll A-B binding family protein LIL3:2 0.84 0.31 -0.3
28 AT3G47650 DnaJ/Hsp40 cysteine-rich domain superfamily protein 0.84 0.32 -0.31
29 AT1G71720 Nucleic acid-binding proteins superfamily PIGMENT DEFECTIVE 338 0.84 0.3 -0.31
30 AT3G04340 FtsH extracellular protease family embryo defective 2458 0.83 0.31 -0.32
31 AT5G64580 AAA-type ATPase family protein EMBRYO DEFECTIVE 3144 0.83 0.31 -0.3
32 AT5G17710 Co-chaperone GrpE family protein embryo defective 1241 0.83 0.31 -0.29
33 AT1G33290 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.82 0.34 -0.32
34 AT2G31840 Thioredoxin superfamily protein Mesophyll-cell RNAi Library line
7-like		 0.82 0.33 -0.32
35 AT5G42765 INVOLVED IN: biological_process unknown; LOCATED IN:
thylakoid, chloroplast thylakoid membrane, chloroplast;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: Twin-arginine
translocation pathway, signal sequence
(InterPro:IPR006311); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 0.82 0.3 -0.32
36 AT3G03630 cysteine synthase 26 cysteine synthase 26 0.82 0.31 -0.32
37 AT5G04710 Zn-dependent exopeptidases superfamily protein 0.82 0.33 -0.31
38 AT4G33760 tRNA synthetase class II (D, K and N) family protein 0.82 0.31 -0.32
39 AT2G41340 RNA polymerase II fifth largest subunit, D RNA polymerase II fifth largest
subunit, D		 0.82 0.32 -0.31
40 AT2G41720 Tetratricopeptide repeat (TPR)-like superfamily protein EMBRYO DEFECTIVE 2654 0.81 0.33 -0.31
41 AT3G02660 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial EMBRYO DEFECTIVE 2768 0.81 0.3 -0.31
42 AT3G47450 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 ATNOA1, ATNOS1, NO ASSOCIATED 1,
NITRIC OXIDE SYNTHASE 1, RESISTANT
TO INHIBITION WITH FOSMIDOMYCIN 1		 0.81 0.32 -0.32
43 AT3G25470 bacterial hemolysin-related 0.81 0.32 -0.31
44 AT2G47130 NAD(P)-binding Rossmann-fold superfamily protein AtSDR3, short-chain
dehydrogenase/reductase 2		 -0.74 0.31 -0.33
45 AT1G54990 alpha/beta-Hydrolases superfamily protein AUXIN RESISTANT 4, REDUCED ROOT
GRAVITROPISM, REDUCED ROOT
GRAVITROPISM 1		 -0.73 0.32 -0.32
46 AT5G18170 glutamate dehydrogenase 1 glutamate dehydrogenase 1 -0.72 0.31 -0.3
47 AT1G13280 allene oxide cyclase 4 allene oxide cyclase 4 -0.7 0.31 -0.33
48 AT1G62660 Glycosyl hydrolases family 32 protein -0.69 0.31 -0.33
49 AT2G46140 Late embryogenesis abundant protein -0.69 0.3 -0.28
50 AT4G25900 Galactose mutarotase-like superfamily protein -0.68 0.3 -0.32
51 AT4G31500 cytochrome P450, family 83, subfamily B, polypeptide 1 ALTERED TRYPTOPHAN REGULATION 4,
cytochrome P450, family 83,
subfamily B, polypeptide 1, RED
ELONGATED 1, RUNT 1, SUPERROOT 2		 -0.68 0.31 -0.33
52 AT2G04400 Aldolase-type TIM barrel family protein -0.68 0.32 -0.3
53 AT2G38860 Class I glutamine amidotransferase-like superfamily protein YLS5 -0.67 0.31 -0.33
54 AT4G22610 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.67 0.34 -0.31
55 AT3G28950 AIG2-like (avirulence induced gene) family protein -0.67 0.32 -0.31
56 AT2G24200 Cytosol aminopeptidase family protein -0.66 0.33 -0.32
57 AT3G15300 VQ motif-containing protein -0.66 0.32 -0.32
58 AT5G54300 Protein of unknown function (DUF761) -0.66 0.31 -0.33
59 AT5G59530 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.65 0.32 -0.3
60 AT1G55265 Protein of unknown function, DUF538 -0.64 0.31 -0.31
61 AT5G10720 histidine kinase 5 histidine kinase 5, CYTOKININ
INDEPENDENT 2, histidine kinase 5		 -0.63 0.3 -0.32
62 AT4G29680 Alkaline-phosphatase-like family protein -0.63 0.32 -0.29
63 AT5G53990 UDP-Glycosyltransferase superfamily protein -0.63 0.33 -0.33
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
64 C0103 Glutaric acid - - - -0.66 0.42 -0.44