AT1G31600 : Arabidopsis thaliana tRNA methyltransferase 9
Query Information
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AGICode AT1G31600
Description RNA-binding (RRM/RBD/RNP motifs) family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G31600 RNA-binding (RRM/RBD/RNP motifs) family protein Arabidopsis thaliana tRNA
methyltransferase 9, tRNA
methyltransferase 9		 1 0.3 -0.3
2 AT2G22530 Alkaline-phosphatase-like family protein 0.75 0.32 -0.32
3 AT2G17975 zinc finger (Ran-binding) family protein 0.72 0.31 -0.33
4 ATMG00400 hypothetical protein ORF157 0.72 0.32 -0.33
5 AT5G08440 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 21 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G23490.1); Has 141 Blast
hits to 139 proteins in 35 species: Archae - 0; Bacteria -
9; Metazoa - 21; Fungi - 6; Plants - 94; Viruses - 0; Other
Eukaryotes - 11 (source: NCBI BLink).		 0.72 0.33 -0.33
6 AT4G19440 Tetratricopeptide repeat (TPR)-like superfamily protein 0.72 0.32 -0.3
7 AT5G59190 subtilase family protein 0.71 0.3 -0.32
8 AT4G18850 unknown protein; Has 6 Blast hits to 6 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.71 0.3 -0.32
9 AT4G35820 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 0.71 0.34 -0.31
10 AT1G54260 winged-helix DNA-binding transcription factor family
protein		 0.7 0.33 -0.31
11 AT4G32700 helicases;ATP-dependent helicases;nucleic acid binding;ATP
binding;DNA-directed DNA polymerases;DNA binding		 TEBICHI 0.7 0.35 -0.32
12 AT3G61010 Ferritin/ribonucleotide reductase-like family protein 0.7 0.31 -0.32
13 AT5G55310 DNA topoisomerase 1 beta TOPOISOMERASE 1, DNA topoisomerase
1 beta		 0.7 0.32 -0.32
14 AT2G46930 Pectinacetylesterase family protein -0.69 0.34 -0.32
15 AT5G19660 SITE-1 protease SITE-1 PROTEASE, ATSBT6.1, SITE-1
protease		 0.67 0.31 -0.32
16 AT3G46390 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G32337.1); Has 5 Blast hits to
5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.67 0.32 -0.31
17 AT4G36980 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Splicing factor, suppressor of white
apricot (InterPro:IPR019147); Has 7672 Blast hits to 5479
proteins in 321 species: Archae - 0; Bacteria - 89; Metazoa
- 5155; Fungi - 712; Plants - 341; Viruses - 39; Other
Eukaryotes - 1336 (source: NCBI BLink).		 0.67 0.31 -0.34
18 AT4G23950 Galactose-binding protein 0.67 0.3 -0.32
19 AT1G61420 S-locus lectin protein kinase family protein 0.66 0.31 -0.31
20 AT2G19700 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; Has 5 Blast hits to 5 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.66 0.31 -0.32
21 AT2G36740 sequence-specific DNA binding transcription factors;DNA
binding;DNA binding		 ATSWC2, SWC2 0.66 0.3 -0.33
22 AT3G28430 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: 17 plant structures; EXPRESSED
DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function FPL (InterPro:IPR019155); Has
243 Blast hits to 233 proteins in 101 species: Archae - 0;
Bacteria - 0; Metazoa - 110; Fungi - 0; Plants - 53;
Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).		 0.66 0.34 -0.3
23 AT3G58280 Arabidopsis phospholipase-like protein (PEARLI 4) with
TRAF-like domain		 0.65 0.32 -0.32
24 AT2G04230 FBD, F-box and Leucine Rich Repeat domains containing
protein		 0.65 0.35 -0.33
25 AT3G04280 response regulator 22 response regulator 22, response
regulator 22		 -0.65 0.32 -0.29
26 AT4G02550 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G02210.2); Has 370 Blast hits
to 300 proteins in 18 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 10; Plants - 354; Viruses - 0; Other
Eukaryotes - 6 (source: NCBI BLink).		 0.65 0.32 -0.33
27 AT1G52570 phospholipase D alpha 2 phospholipase D alpha 2 0.65 0.31 -0.32
28 AT3G21810 Zinc finger C-x8-C-x5-C-x3-H type family protein 0.65 0.31 -0.3
29 AT2G27120 DNA polymerase epsilon catalytic subunit POL2B, TILTED 2 0.65 0.3 -0.32
30 AT5G37370 PRP38 family protein ATSRL1 0.65 0.31 -0.3
31 AT4G07460 transposable element gene -0.65 0.32 -0.3
32 AT4G33870 Peroxidase superfamily protein 0.65 0.31 -0.31
33 AT1G47310 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 13 growth stages; Has 45 Blast hits to 45
proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.64 0.33 -0.3
34 AT5G06100 myb domain protein 33 ATMYB33, myb domain protein 33 0.64 0.34 -0.32
35 AT3G29390 RS2-interacting KH protein RS2-interacting KH protein 0.64 0.33 -0.32
36 AT1G09230 RNA-binding (RRM/RBD/RNP motifs) family protein 0.64 0.33 -0.3
37 AT1G27370 squamosa promoter binding protein-like 10 squamosa promoter binding
protein-like 10		 0.64 0.32 -0.29
38 AT5G05950 maternal effect embryo arrest 60 maternal effect embryo arrest 60 -0.64 0.3 -0.33
39 AT3G47230 transposable element gene -0.63 0.33 -0.29
40 AT3G49400 Transducin/WD40 repeat-like superfamily protein 0.63 0.34 -0.31
41 AT3G05020 acyl carrier protein 1 ACYL CARRIER PROTEIN, acyl carrier
protein 1		 -0.63 0.3 -0.32
42 AT1G02960 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G02965.1); Has 83 Blast hits
to 82 proteins in 37 species: Archae - 0; Bacteria - 2;
Metazoa - 20; Fungi - 7; Plants - 29; Viruses - 0; Other
Eukaryotes - 25 (source: NCBI BLink).		 0.63 0.33 -0.31
43 AT5G61150 leo1-like family protein VERNALIZATION INDEPENDENCE 4 0.63 0.3 -0.33
44 AT5G45760 Transducin/WD40 repeat-like superfamily protein 0.63 0.31 -0.32
45 AT1G36150 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 0.63 0.33 -0.33
46 AT3G19610 Plant protein of unknown function (DUF936) -0.63 0.33 -0.32
47 AT1G05790 lipase class 3 family protein 0.63 0.32 -0.31
48 AT5G22400 Rho GTPase activating protein with PAK-box/P21-Rho-binding
domain		 -0.62 0.3 -0.33
49 AT5G37900 TRAF-like superfamily protein -0.62 0.3 -0.34
50 AT5G43900 myosin 2 ARABIDOPSIS MYOSIN 2, myosin 2,
MYOSIN X1 2, MYOSIN XI-6		 0.62 0.32 -0.3
51 AT1G53090 SPA1-related 4 SPA1-related 4 0.62 0.29 -0.32
52 AT4G31280 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.62 0.31 -0.31
53 AT5G56480 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 0.62 0.33 -0.31
54 AT4G14530 BEST Arabidopsis thaliana protein match is: AGAMOUS-like 97
(TAIR:AT1G46408.1); Has 21 Blast hits to 21 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.62 0.32 -0.3
55 AT2G20300 Protein kinase superfamily protein Abnormal Leaf Shape 2 -0.62 0.31 -0.31
56 AT2G24370 Protein kinase protein with adenine nucleotide alpha
hydrolases-like domain		 0.62 0.31 -0.32
57 AT1G05770 Mannose-binding lectin superfamily protein -0.62 0.3 -0.31
58 AT3G11980 Jojoba acyl CoA reductase-related male sterility protein FATTY ACID REDUCTASE 2, MALE
STERILITY 2		 0.62 0.33 -0.32
59 AT4G34140 D111/G-patch domain-containing protein 0.62 0.34 -0.33
60 AT4G00040 Chalcone and stilbene synthase family protein 0.61 0.31 -0.31
61 AT3G15390 silencing defective 5 silencing defective 5 0.61 0.31 -0.3
62 AT5G02690 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 11 plant structures;
EXPRESSED DURING: 9 growth stages; Has 2 Blast hits to 2
proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.61 0.31 -0.32
63 AT2G11270 citrate synthase-related 0.61 0.31 -0.32
64 AT2G37720 TRICHOME BIREFRINGENCE-LIKE 15 TRICHOME BIREFRINGENCE-LIKE 15 -0.61 0.3 -0.33
65 AT5G09410 ethylene induced calmodulin binding protein calmodulin-binding transcription
activator 1, ethylene induced
calmodulin binding protein		 0.61 0.32 -0.34
66 AT3G09960 Calcineurin-like metallo-phosphoesterase superfamily
protein		 0.6 0.3 -0.3
67 AT1G64280 regulatory protein (NPR1) ARABIDOPSIS NONEXPRESSER OF PR
GENES 1, NON-INDUCIBLE IMMUNITY 1,
NONEXPRESSER OF PR GENES 1,
SALICYLIC ACID INSENSITIVE 1		 -0.6 0.31 -0.3
68 AT5G15540 PHD finger family protein ARABIDOPSIS THALIANA
SISTER-CHROMATID COHESION 2,
EMBRYO DEFECTIVE 2773,
SISTER-CHROMATID COHESION 2		 0.6 0.31 -0.32
69 AT2G42330 GC-rich sequence DNA-binding factor-like protein with
Tuftelin interacting domain		 0.6 0.31 -0.31
70 AT1G24060 unknown protein; Has 7 Blast hits to 7 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.6 0.31 -0.3
71 AT2G04540 Beta-ketoacyl synthase 0.6 0.3 -0.32
72 AT4G30570 Glucose-1-phosphate adenylyltransferase family protein 0.6 0.34 -0.32
73 AT2G39580 CONTAINS InterPro DOMAIN/s: Putative zinc-finger domain
(InterPro:IPR019607); Has 249 Blast hits to 219 proteins in
85 species: Archae - 0; Bacteria - 144; Metazoa - 29; Fungi
- 8; Plants - 50; Viruses - 0; Other Eukaryotes - 18
(source: NCBI BLink).		 0.6 0.33 -0.3
74 AT5G25530 DNAJ heat shock family protein 0.6 0.3 -0.31
75 AT5G47970 Aldolase-type TIM barrel family protein 0.6 0.32 -0.32
76 AT3G01010 UDP-glucose/GDP-mannose dehydrogenase family protein -0.6 0.32 -0.32
77 AT4G07640 transposable element gene 0.6 0.33 -0.32
78 AT5G24670 Cytidine/deoxycytidylate deaminase family protein EMBRYO DEFECTIVE 2820, tRNA
adenosine deaminase 3		 0.59 0.32 -0.32
79 AT3G58760 Integrin-linked protein kinase family 0.59 0.32 -0.34
80 AT2G17950 Homeodomain-like superfamily protein PGA6, WUSCHEL, WUSCHEL 1 -0.59 0.32 -0.3
81 AT5G07550 glycine-rich protein 19 ATGRP19, glycine-rich protein 19 0.59 0.32 -0.31
82 AT2G17845 NAD(P)-binding Rossmann-fold superfamily protein 0.59 0.32 -0.33
83 AT3G44270 transposable element gene -0.59 0.33 -0.33
84 AT2G14420 transposable element gene 0.59 0.33 -0.32
85 AT2G38300 myb-like HTH transcriptional regulator family protein 0.59 0.32 -0.3
86 AT5G06660 Protein of unknown function DUF106, transmembrane -0.59 0.32 -0.3
87 AT1G27520 Glycosyl hydrolase family 47 protein 0.59 0.34 -0.35
88 AT5G26880 AGAMOUS-like 26 AGAMOUS-like 26 0.59 0.33 -0.31
89 AT2G19250 pseudogene, similar to Magnesium-chelatase subunit chlD,
chloroplast precursor (Mg- protoporphyrin IX chelatase)
(Mg-chelatase subunit D). (Common tobacco), similar to
SP|O24133 Magnesium-chelatase subunit chlD, chloroplast
precursor (Mg-protoporphyrin IX chelatase) (Mg-chelatase
subunit D) {Nicotiana tabacum}; blastp match of 78%
identity and 5.0e-07 P-value to SP|O24133|CHLD_TOBAC
Magnesium-chelatase subunit chlD, chloroplast precursor
(Mg- protoporphyrin IX chelatase) (Mg-chelatase subunit D).
(Common tobacco) {Nicotiana tabacum}		 0.59 0.29 -0.33
90 AT3G18170 Glycosyltransferase family 61 protein -0.59 0.33 -0.3
91 AT1G79820 Major facilitator superfamily protein SUPPRESSOR OF G PROTEIN BETA1 0.58 0.32 -0.32
92 AT1G59890 SIN3-like 5 SIN3-like 5 0.58 0.33 -0.34
93 AT3G20040 Hexokinase ATHXK4, HEXOKINASE-LIKE 2 0.58 0.31 -0.31
94 AT1G63280 Serine protease inhibitor (SERPIN) family protein 0.58 0.3 -0.3
95 AT2G21460 transposable element gene -0.58 0.31 -0.32
96 AT5G35430 Tetratricopeptide repeat (TPR)-like superfamily protein -0.58 0.31 -0.33
97 AT1G23830 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 12 plant structures;
EXPRESSED DURING: 9 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G23840.1); Has 57 Blast hits to 52 proteins in 7
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.58 0.31 -0.31
98 AT3G32060 transposable element gene -0.58 0.31 -0.33
99 AT4G02430 RNA-binding (RRM/RBD/RNP motifs) family protein Serine/Arginine-Rich Protein
Splicing Factor 34b,
Serine/Arginine-Rich Protein
Splicing Factor 34b		 0.58 0.3 -0.33
100 AT2G27980 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc
finger domain		 0.58 0.32 -0.28
101 AT3G28030 5'-3' exonuclease family protein ULTRAVIOLET HYPERSENSITIVE 3, UV
REPAIR DEFECTIVE 1		 0.57 0.32 -0.29
102 AT1G80580 Integrase-type DNA-binding superfamily protein 0.57 0.32 -0.34
103 AT1G57906 unknown protein; BEST Arabidopsis thaliana protein match
is: F-box family protein with a domain of unknown function
(DUF295) (TAIR:AT2G17690.1); Has 57 Blast hits to 57
proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.57 0.32 -0.31
104 AT3G11040 Glycosyl hydrolase family 85 AtENGase85B,
Endo-beta-N-acetyglucosaminidase
85B		 0.57 0.32 -0.33
105 AT1G51300 alpha/beta-Hydrolases superfamily protein 0.57 0.28 -0.3
106 AT5G07430 Pectin lyase-like superfamily protein -0.57 0.32 -0.32
107 AT3G20580 COBRA-like protein 10 precursor COBRA-like protein 10 precursor -0.57 0.33 -0.32
108 AT2G43150 Proline-rich extensin-like family protein 0.57 0.32 -0.32
109 AT2G41930 Protein kinase superfamily protein -0.57 0.29 -0.31
110 AT3G50870 GATA type zinc finger transcription factor family protein GATA TRANSCRIPTION FACTOR 18,
HANABA TANARU, MONOPOLE		 -0.56 0.32 -0.33
111 AT3G33064 transposable element gene -0.56 0.33 -0.32
112 AT1G75250 RAD-like 6 RAD-like 6, RAD-like 6,
RADIALIS-LIKE SANT/MYB 3		 -0.56 0.31 -0.31
113 AT1G80510 Transmembrane amino acid transporter family protein -0.55 0.33 -0.31
114 AT2G18640 geranylgeranyl pyrophosphate synthase 4 geranylgeranyl pyrophosphate
synthase 4		 -0.55 0.34 -0.31
115 AT3G32000 transposable element gene -0.55 0.31 -0.3
116 AT5G61920 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures;
EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal
differentiation and expansion stage, E expanded cotyledon
stage, D bilateral stage; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G67170.1); Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 -0.55 0.31 -0.3
117 AT4G11780 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G23020.2); Has 550 Blast hits
to 387 proteins in 92 species: Archae - 0; Bacteria - 32;
Metazoa - 132; Fungi - 122; Plants - 80; Viruses - 0; Other
Eukaryotes - 184 (source: NCBI BLink).		 -0.55 0.36 -0.31
118 AT2G44240 Protein of Unknown Function (DUF239) -0.55 0.3 -0.32
119 AT3G17090 Protein phosphatase 2C family protein -0.55 0.3 -0.31
120 AT1G15220 cytochrome c biogenesis protein family ATCCMH, CCMH -0.54 0.33 -0.31
121 AT1G20330 sterol methyltransferase 2 COTYLEDON VASCULAR PATTERN 1,
FRILL1, sterol methyltransferase 2		 -0.54 0.34 -0.32
122 AT5G11280 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G80200.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.54 0.31 -0.31
123 AT4G28720 Flavin-binding monooxygenase family protein YUCCA 8 -0.54 0.34 -0.34
124 AT3G03210 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; Has 59 Blast hits to 59
proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes -
3 (source: NCBI BLink).		 -0.54 0.32 -0.31
125 AT3G27980 Plant invertase/pectin methylesterase inhibitor superfamily -0.53 0.32 -0.33
126 AT3G23680 F-box associated ubiquitination effector family protein -0.53 0.32 -0.32
127 AT3G53290 cytochrome P450, family 71, subfamily B, polypeptide 30
pseudogene		 cytochrome P450, family 71,
subfamily B, polypeptide 30
pseudogene		 -0.53 0.32 -0.31
128 AT5G43530 Helicase protein with RING/U-box domain -0.53 0.33 -0.32
129 AT1G65910 NAC domain containing protein 28 NAC domain containing protein 28,
NAC domain containing protein 28		 -0.53 0.31 -0.29
130 AT3G29640 transposable element gene -0.53 0.31 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
131 C0228 Ribose-5-phosphate D-Ribose-5-phosphate D-Ribose-5-phosphate PRPP biosynthesis I,
Calvin-Benson-Bassham cycle,
trans-zeatin biosynthesis,
pentose phosphate pathway (non-oxidative branch),
pyridine nucleotide cycling (plants),
Rubisco shunt,
ribose degradation,
pyridoxal 5'-phosphate biosynthesis II 		-0.73 0.44 -0.47 C0228
132 C0187 Neoeriocitrin - - - -0.61 0.44 -0.44