AT3G30740 : -
Query Information
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AGICode AT3G30740
Description 40S ribosomal protein S25 (RPS25C), pseudogene, similar to GB:P46301 GI:1173234 40S RIBOSOMAL PROTEIN S25 from (Lycopersicon esculentum); blastp match of 75% identity and 7.2e-09 P-value to SP|P46301|RS25_LYCES 40S ribosomal protein S25. (Tomato) {Lycopersicon esculentum}
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G30740 40S ribosomal protein S25 (RPS25C), pseudogene, similar to
GB:P46301 GI:1173234 40S RIBOSOMAL PROTEIN S25 from
(Lycopersicon esculentum); blastp match of 75% identity and
7.2e-09 P-value to SP|P46301|RS25_LYCES 40S ribosomal
protein S25. (Tomato) {Lycopersicon esculentum}		 1 0.32 -0.33
2 AT1G14780 MAC/Perforin domain-containing protein -0.71 0.32 -0.34
3 AT1G33280 NAC domain containing protein 15 NAC domain containing protein 15,
BEARSKIN 1, NAC domain containing
protein 15		 -0.66 0.3 -0.3
4 AT1G69850 nitrate transporter 1:2 nitrate transporter 1:2, nitrate
transporter 1:2, NTL1		 -0.64 0.33 -0.31
5 AT4G09950 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.63 0.31 -0.31
6 AT1G59750 auxin response factor 1 auxin response factor 1 0.63 0.3 -0.34
7 AT1G41797 transposable element gene 0.63 0.3 -0.3
8 AT4G22490 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 0.61 0.34 -0.32
9 AT2G31440 INVOLVED IN: positive regulation of catalytic activity,
protein processing; LOCATED IN: integral to membrane;
EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15
growth stages; CONTAINS InterPro DOMAIN/s: Aph-1
(InterPro:IPR009294); Has 268 Blast hits to 262 proteins in
79 species: Archae - 0; Bacteria - 0; Metazoa - 212; Fungi
- 0; Plants - 34; Viruses - 0; Other Eukaryotes - 22
(source: NCBI BLink).		 0.6 0.32 -0.3
10 AT4G07540 transposable element gene 0.6 0.3 -0.31
11 AT3G52710 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 19 plant structures; EXPRESSED
DURING: 9 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G36220.1); Has 64 Blast
hits to 64 proteins in 10 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.59 0.3 -0.3
12 AT5G60250 zinc finger (C3HC4-type RING finger) family protein -0.59 0.31 -0.31
13 AT3G62020 germin-like protein 10 germin-like protein 10 0.59 0.31 -0.32
14 AT1G07560 Leucine-rich repeat protein kinase family protein -0.58 0.31 -0.33
15 AT5G57590 adenosylmethionine-8-amino-7-oxononanoate transaminases biotin auxotroph 1 0.58 0.3 -0.32
16 AT2G19180 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G16840.1); Has 64 Blast hits
to 64 proteins in 12 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.58 0.32 -0.28
17 AT4G02910 unknown protein; Has 5 Blast hits to 5 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.58 0.32 -0.31
18 AT4G07820 CAP (Cysteine-rich secretory proteins, Antigen 5, and
Pathogenesis-related 1 protein) superfamily protein		 -0.57 0.31 -0.3
19 AT2G27250 CLAVATA3 AtCLV3, CLAVATA3 0.57 0.35 -0.32
20 AT5G26840 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.57 0.33 -0.29
21 AT4G23210 cysteine-rich RLK (RECEPTOR-like protein kinase) 13 cysteine-rich RLK (RECEPTOR-like
protein kinase) 13		 -0.57 0.31 -0.33
22 AT5G09800 ARM repeat superfamily protein -0.57 0.33 -0.31
23 AT5G25120 ytochrome p450, family 71, subfamily B, polypeptide 11 ytochrome p450, family 71,
subfamily B, polypeptide 11		 -0.57 0.31 -0.3
24 AT2G27750 Surfeit locus protein 6 -0.57 0.3 -0.35
25 AT4G31750 HOPW1-1-interacting 2 HOPW1-1-interacting 2 -0.57 0.33 -0.31
26 AT5G02570 Histone superfamily protein -0.57 0.32 -0.32
27 AT1G65240 Eukaryotic aspartyl protease family protein -0.56 0.33 -0.3
28 AT2G28890 poltergeist like 4 poltergeist like 4 -0.56 0.29 -0.29
29 AT2G07740 transposable element gene -0.56 0.32 -0.31
30 AT3G45730 unknown protein; Has 3 Blast hits to 3 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.56 0.3 -0.31
31 AT1G28710 Nucleotide-diphospho-sugar transferase family protein 0.56 0.34 -0.28
32 AT4G39650 gamma-glutamyl transpeptidase 2 gamma-glutamyl transpeptidase 2 -0.55 0.33 -0.32
33 AT5G23320 homolog of yeast STE14 A ARABIDOPSIS THALIANA ISOPRENYL
CYSTEINE METHYLTRANSFERASE A,
LPHA-CARBOXYL METHYLTRANSFERASE,
ATSTE14, homolog of yeast STE14 A,
ISOPRENYL CYSTEINE
METHYLTRANSFERASE A, STE14,
homolog of yeast STE14 A		 0.55 0.32 -0.31
34 AT4G10460 transposable element gene -0.55 0.33 -0.31
35 AT1G72960 Root hair defective 3 GTP-binding protein (RHD3) 0.55 0.31 -0.31
36 AT3G44570 Arabidopsis retrotransposon ORF-1 protein 0.55 0.32 -0.32
37 AT2G37740 zinc-finger protein 10 ZINC-FINGER PROTEIN 10,
zinc-finger protein 10		 -0.54 0.33 -0.3
38 AT3G13730 cytochrome P450, family 90, subfamily D, polypeptide 1 cytochrome P450, family 90,
subfamily D, polypeptide 1		 -0.54 0.3 -0.32
39 AT1G13830 Carbohydrate-binding X8 domain superfamily protein -0.54 0.33 -0.32
40 AT2G37590 DNA binding with one finger 2.4 ATDOF2.4, DNA binding with one
finger 2.4		 0.53 0.31 -0.3
41 AT4G22020 pseudogene, hypothetical protein, similar to
uncharacterized glycine-rich protein (GI:7269047)
{Arabidopsis thaliana}		 -0.53 0.32 -0.31
42 AT3G28610 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.53 0.31 -0.32
43 AT5G54400 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.53 0.34 -0.32
44 AT5G11410 Protein kinase superfamily protein -0.52 0.32 -0.3
45 AT1G55180 phospholipase D alpha 4 PLDALPHA4, phospholipase D alpha 4 0.52 0.3 -0.32
46 AT2G10850 transposable element gene 0.52 0.31 -0.32
47 AT4G15030 CONTAINS InterPro DOMAIN/s: Folate-sensitive fragile site
protein Fra10Ac1 (InterPro:IPR019129); Has 8455 Blast hits
to 5700 proteins in 376 species: Archae - 6; Bacteria -
264; Metazoa - 3820; Fungi - 744; Plants - 645; Viruses -
76; Other Eukaryotes - 2900 (source: NCBI BLink).		 0.52 0.32 -0.31
48 AT5G14960 DP-E2F-like 2 DP-E2F-like 2, E2FD, E2L1 0.51 0.34 -0.32
49 AT5G45500 RNI-like superfamily protein -0.51 0.31 -0.33
50 AT5G45180 Flavin-binding monooxygenase family protein -0.51 0.32 -0.34
51 AT1G37057 transposable element gene -0.51 0.35 -0.29
52 AT2G24255 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF295 (InterPro:IPR005174); BEST
Arabidopsis thaliana protein match is: Protein of unknown
function (DUF295) (TAIR:AT1G64840.1); Has 124 Blast hits to
121 proteins in 7 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.51 0.32 -0.3
53 AT3G27380 succinate dehydrogenase 2-1 succinate dehydrogenase 2-1 0.51 0.32 -0.3
54 AT5G06490 RING/U-box superfamily protein 0.51 0.33 -0.31
55 AT1G22420 hydroxyproline-rich glycoprotein family protein -0.51 0.31 -0.33
56 AT3G50740 UDP-glucosyl transferase 72E1 UDP-glucosyl transferase 72E1 -0.51 0.29 -0.31
57 AT1G34170 AUXIN RESPONSE FACTOR 13 AUXIN RESPONSE FACTOR 13 -0.5 0.31 -0.32
58 AT3G61040 cytochrome P450, family 76, subfamily C, polypeptide 7 cytochrome P450, family 76,
subfamily C, polypeptide 7		 -0.5 0.3 -0.3
59 AT2G18070 unknown protein; BEST Arabidopsis thaliana protein match
is: Protein of unknown function DUF2359, transmembrane
(TAIR:AT1G23170.2); Has 27 Blast hits to 27 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.5 0.32 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
60 C0002 α-Lipoic acid (+/-)-α-Lipoic acid Lipoate cofactor of fatty acid biosynthesis 0.76 0.43 -0.46 C0002
61 C0198 Phosphatidylethanolamine-34:0 - - - -0.7 0.44 -0.47
62 C0024 2-(Anilinomethyl)pyrrolidine (S)-(+)-2-(anilinomethyl)pyrrolidine - - 0.69 0.47 -0.44
63 C0018 sn-Glycerol-3-phosphate D,L-sn-Glycerol-3-phosphate sn-Glycerol-3-phosphate CDP-diacylglycerol biosynthesis II,
phosphatidylglycerol biosynthesis II (non-plastidic),
triacylglycerol biosynthesis,
glycerol degradation IV,
glycerol-3-phosphate shuttle,
a quinone + sn-glycerol-3-phosphate -> a quinol + dihydroxyacetone phosphate,
CDP-diacylglycerol biosynthesis I,
cardiolipin biosynthesis II,
phosphatidylglycerol biosynthesis I (plastidic),
sn-glycerol-3-phosphate + a ubiquinone -> a ubiquinol + dihydroxyacetone phosphate,
an electron-transfer-related quinone + sn-glycerol-3-phosphate -> an electron-transfer-related quinol + dihydroxyacetone phosphate 		0.66 0.45 -0.49 C0018
64 C0089 Fortunellin - - - 0.63 0.42 -0.47
65 C0229 Robinin - - flavone biosynthesis 0.58 0.45 -0.47