AT3G29640 : -
Query Information
Cytoscape Web will replace the contents of this div with your graph.
AGICode AT3G29640
Description transposable element gene
Gene information
Help   
  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G29640 transposable element gene 1 0.3 -0.31
2 AT1G48980 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 0.69 0.33 -0.31
3 AT1G61750 Receptor-like protein kinase-related family protein 0.69 0.31 -0.31
4 AT3G27980 Plant invertase/pectin methylesterase inhibitor superfamily 0.68 0.31 -0.29
5 AT3G29792 transposable element gene -0.68 0.3 -0.33
6 AT1G46336 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.68 0.31 -0.3
7 AT4G35820 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.67 0.3 -0.29
8 AT5G09950 Tetratricopeptide repeat (TPR)-like superfamily protein 0.66 0.32 -0.31
9 AT3G04280 response regulator 22 response regulator 22, response
regulator 22		 0.66 0.32 -0.31
10 ATMG00320 hypothetical protein ORF127 0.66 0.33 -0.33
11 AT2G19250 pseudogene, similar to Magnesium-chelatase subunit chlD,
chloroplast precursor (Mg- protoporphyrin IX chelatase)
(Mg-chelatase subunit D). (Common tobacco), similar to
SP|O24133 Magnesium-chelatase subunit chlD, chloroplast
precursor (Mg-protoporphyrin IX chelatase) (Mg-chelatase
subunit D) {Nicotiana tabacum}; blastp match of 78%
identity and 5.0e-07 P-value to SP|O24133|CHLD_TOBAC
Magnesium-chelatase subunit chlD, chloroplast precursor
(Mg- protoporphyrin IX chelatase) (Mg-chelatase subunit D).
(Common tobacco) {Nicotiana tabacum}		 -0.66 0.29 -0.33
12 AT5G12450 FBD-like domain family protein -0.65 0.32 -0.32
13 AT1G35380 transposable element gene 0.65 0.31 -0.3
14 AT3G42290 transposable element gene 0.65 0.31 -0.33
15 AT5G37640 ubiquitin 9 ubiquitin 9 0.64 0.33 -0.31
16 AT5G48270 Plant protein of unknown function (DUF868) -0.64 0.32 -0.32
17 AT4G30570 Glucose-1-phosphate adenylyltransferase family protein -0.64 0.32 -0.3
18 AT3G05090 Transducin/WD40 repeat-like superfamily protein LATERAL ROOT STIMULATOR 1 -0.64 0.31 -0.32
19 AT2G07190 Domain of unknown function (DUF1985) 0.64 0.32 -0.32
20 AT1G58210 kinase interacting family protein EMBRYO DEFECTIVE 1674 -0.64 0.3 -0.31
21 AT3G43330 transposable element gene 0.63 0.33 -0.32
22 AT3G06230 MAP kinase kinase 8 MAP kinase kinase 8, MAP kinase
kinase 8		 -0.63 0.33 -0.3
23 AT3G27700 zinc finger (CCCH-type) family protein / RNA recognition
motif (RRM)-containing protein		 -0.63 0.3 -0.3
24 AT1G66480 plastid movement impaired 2 -0.62 0.32 -0.32
25 AT1G36150 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.62 0.33 -0.3
26 AT1G70180 Sterile alpha motif (SAM) domain-containing protein -0.62 0.3 -0.31
27 AT4G09960 K-box region and MADS-box transcription factor family
protein 		AGAMOUS-like 11, SEEDSTICK 0.62 0.3 -0.32
28 AT2G38900 Serine protease inhibitor, potato inhibitor I-type family
protein		 -0.62 0.31 -0.3
29 AT2G16190 BEST Arabidopsis thaliana protein match is:
hydroxyproline-rich glycoprotein family protein
(TAIR:AT1G49330.1); Has 77 Blast hits to 77 proteins in 25
species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 13;
Plants - 56; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 -0.62 0.31 -0.31
30 AT2G18640 geranylgeranyl pyrophosphate synthase 4 geranylgeranyl pyrophosphate
synthase 4		 0.61 0.31 -0.31
31 AT2G13750 transposable element gene -0.61 0.29 -0.31
32 AT3G29690 HXXXD-type acyl-transferase family protein 0.61 0.32 -0.31
33 AT2G12880 Zinc knuckle (CCHC-type) family protein 0.61 0.32 -0.32
34 AT3G42390 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.61 0.31 -0.32
35 AT3G49270 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING:
4 anthesis, C globular stage, petal differentiation and
expansion stage; BEST Arabidopsis thaliana protein match
is: proline-rich family protein (TAIR:AT3G49300.1); Has 63
Blast hits to 43 proteins in 11 species: Archae - 0;
Bacteria - 0; Metazoa - 28; Fungi - 0; Plants - 31; Viruses
- 0; Other Eukaryotes - 4 (source: NCBI BLink).		 0.61 0.33 -0.31
36 AT1G23600 Domain of unknown function DUF220 0.6 0.31 -0.3
37 AT4G31280 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.6 0.33 -0.32
38 AT1G26310 K-box region and MADS-box transcription factor family
protein 		AGAMOUS-like 10, CAULIFLOWER, CAL1 0.6 0.31 -0.35
39 AT4G14530 BEST Arabidopsis thaliana protein match is: AGAMOUS-like 97
(TAIR:AT1G46408.1); Has 21 Blast hits to 21 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.6 0.32 -0.33
40 AT2G03170 SKP1-like 14 SKP1-like 14, SKP1-like 14 -0.6 0.3 -0.32
41 AT5G57320 villin, putative villin 5 -0.6 0.29 -0.3
42 AT2G43270 F-box and associated interaction domains-containing protein 0.6 0.3 -0.31
43 AT2G19210 Leucine-rich repeat transmembrane protein kinase protein -0.6 0.33 -0.32
44 AT3G26125 cytochrome P450, family 86, subfamily C, polypeptide 2 cytochrome P450, family 86,
subfamily C, polypeptide 2		 0.6 0.32 -0.31
45 AT3G09960 Calcineurin-like metallo-phosphoesterase superfamily
protein		 -0.59 0.33 -0.33
46 AT1G22890 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 19 plant structures;
EXPRESSED DURING: 11 growth stages; Has 17 Blast hits to 17
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.59 0.32 -0.31
47 AT5G50480 nuclear factor Y, subunit C6 nuclear factor Y, subunit C6 -0.59 0.3 -0.32
48 AT1G64690 branchless trichome BRANCHLESS TRICHOMES 0.59 0.32 -0.31
49 AT3G29610 transposable element gene 0.59 0.3 -0.29
50 AT2G24370 Protein kinase protein with adenine nucleotide alpha
hydrolases-like domain		 -0.59 0.31 -0.3
51 AT5G42640 C2H2 and C2HC zinc fingers superfamily protein 0.59 0.32 -0.35
52 AT1G32650 unknown protein; Has 0 Blast hits to 0 proteins in 0
species (source: NCBI BLink).		 -0.59 0.32 -0.31
53 AT3G11980 Jojoba acyl CoA reductase-related male sterility protein FATTY ACID REDUCTASE 2, MALE
STERILITY 2		 -0.59 0.32 -0.33
54 AT5G07430 Pectin lyase-like superfamily protein 0.59 0.29 -0.31
55 AT4G07940 Protein of unknown function (DUF3245) -0.59 0.31 -0.31
56 AT4G20200 Terpenoid cyclases/Protein prenyltransferases superfamily
protein		 -0.58 0.32 -0.32
57 AT1G04500 CCT motif family protein -0.58 0.31 -0.32
58 AT1G64280 regulatory protein (NPR1) ARABIDOPSIS NONEXPRESSER OF PR
GENES 1, NON-INDUCIBLE IMMUNITY 1,
NONEXPRESSER OF PR GENES 1,
SALICYLIC ACID INSENSITIVE 1		 0.58 0.3 -0.33
59 AT3G30800 transposable element gene -0.58 0.31 -0.33
60 AT2G20280 Zinc finger C-x8-C-x5-C-x3-H type family protein -0.58 0.34 -0.32
61 AT4G02460 DNA mismatch repair protein, putative POSTMEIOTIC SEGREGATION 1 -0.58 0.33 -0.29
62 AT4G02190 Cysteine/Histidine-rich C1 domain family protein 0.58 0.33 -0.32
63 AT5G59260 Concanavalin A-like lectin protein kinase family protein 0.58 0.31 -0.34
64 AT1G05990 EF hand calcium-binding protein family ROOT HAIR SPECIFIC 1 0.57 0.3 -0.31
65 AT1G74580 Pentatricopeptide repeat (PPR) superfamily protein -0.57 0.31 -0.31
66 AT1G63900 E3 Ubiquitin ligase family protein DIAP1-like protein 1 0.57 0.3 -0.32
67 AT3G22180 DHHC-type zinc finger family protein 0.57 0.32 -0.32
68 AT4G33020 ZIP metal ion transporter family ATZIP9, ZIP9 0.57 0.3 -0.32
69 AT4G08970 transposable element gene 0.57 0.32 -0.32
70 AT3G18650 AGAMOUS-like 103 AGAMOUS-like 103 -0.57 0.3 -0.32
71 AT3G47230 transposable element gene 0.56 0.31 -0.33
72 AT2G25760 Protein kinase family protein -0.56 0.34 -0.3
73 AT3G23680 F-box associated ubiquitination effector family protein 0.56 0.3 -0.32
74 AT1G32300 D-arabinono-1,4-lactone oxidase family protein 0.56 0.33 -0.31
75 AT3G58080 unknown protein; Has 3 Blast hits to 3 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.56 0.31 -0.33
76 AT3G49640 Aldolase-type TIM barrel family protein -0.56 0.32 -0.3
77 AT1G43950 auxin response factor 23 auxin response factor 23 0.56 0.32 -0.29
78 AT5G36090 transposable element gene 0.56 0.33 -0.33
79 AT3G29070 emp24/gp25L/p24 family/GOLD family protein 0.56 0.29 -0.31
80 AT1G51910 Leucine-rich repeat protein kinase family protein 0.56 0.32 -0.32
81 AT5G49290 receptor like protein 56 receptor like protein 56, receptor
like protein 56		 -0.55 0.31 -0.34
82 AT3G60570 expansin B5 expansin B5, ATHEXP BETA 1.3,
expansin B5		 -0.55 0.33 -0.32
83 AT5G01980 RING/U-box superfamily protein 0.55 0.3 -0.32
84 AT3G42100 transposable element gene -0.55 0.32 -0.31
85 AT5G19660 SITE-1 protease SITE-1 PROTEASE, ATSBT6.1, SITE-1
protease		 -0.55 0.33 -0.29
86 AT1G01740 Protein kinase protein with tetratricopeptide repeat domain -0.55 0.32 -0.31
87 AT5G57520 zinc finger protein 2 ZINC FINGER PROTEIN 2, zinc finger
protein 2		 0.55 0.32 -0.31
88 AT5G09690 magnesium transporter 7 ARABIDOPSIS THALIANA MAGNESIUM
TRANSPORTER 7, magnesium
transporter 7, MRS2-7		 -0.55 0.31 -0.3
89 AT1G47885 Ribonuclease inhibitor -0.55 0.31 -0.3
90 AT3G25630 transposable element gene 0.55 0.32 -0.3
91 AT3G09880 Protein phosphatase 2A regulatory B subunit family protein ATB' BETA -0.55 0.35 -0.32
92 AT3G45490 BEST Arabidopsis thaliana protein match is: RING/U-box
superfamily protein (TAIR:AT2G25370.1); Has 99 Blast hits
to 96 proteins in 10 species: Archae - 0; Bacteria - 2;
Metazoa - 0; Fungi - 0; Plants - 97; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.55 0.32 -0.32
93 AT1G36600 transposable element gene -0.55 0.32 -0.31
94 AT3G26085 CAAX amino terminal protease family protein -0.54 0.31 -0.32
95 AT1G64410 transposable element gene -0.54 0.33 -0.34
96 AT1G54700 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: mitochondrion;
CONTAINS InterPro DOMAIN/s: Serine endopeptidase DegP2
(InterPro:IPR015724); BEST Arabidopsis thaliana protein
match is: DegP protease 13 (TAIR:AT5G40560.1); Has 78 Blast
hits to 78 proteins in 13 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.54 0.28 -0.3
97 AT5G19380 CRT (chloroquine-resistance transporter)-like transporter 1 CRT (chloroquine-resistance
transporter)-like transporter 1		 -0.54 0.29 -0.31
98 AT4G08790 Nitrilase/cyanide hydratase and apolipoprotein
N-acyltransferase family protein		 -0.54 0.32 -0.32
99 AT3G23040 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.54 0.32 -0.3
100 AT2G28710 C2H2-type zinc finger family protein 0.54 0.3 -0.32
101 AT5G63280 C2H2-like zinc finger protein -0.54 0.31 -0.3
102 AT2G23740 nucleic acid binding;sequence-specific DNA binding
transcription factors;zinc ion binding		 -0.54 0.3 -0.33
103 AT2G19600 K+ efflux antiporter 4 K+ efflux antiporter 4, KEA4, K+
efflux antiporter 4		 -0.54 0.33 -0.31
104 AT2G02380 glutathione S-transferase (class zeta) 2 glutathione S-transferase (class
zeta) 2, glutathione S-transferase
(class zeta) 2		 -0.54 0.33 -0.32
105 AT4G02690 Bax inhibitor-1 family protein 0.54 0.31 -0.32
106 AT2G20400 myb-like HTH transcriptional regulator family protein 0.53 0.31 -0.31
107 AT2G32900 centromere/kinetochore protein, putative (ZW10) ATZW10 -0.53 0.3 -0.3
108 AT4G18860 unknown protein; Has 4 Blast hits to 4 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.53 0.32 -0.34
109 AT1G62890 transposable element gene -0.53 0.33 -0.33
110 AT3G47660 Regulator of chromosome condensation (RCC1) family protein 0.53 0.3 -0.32
111 AT1G31600 RNA-binding (RRM/RBD/RNP motifs) family protein Arabidopsis thaliana tRNA
methyltransferase 9, tRNA
methyltransferase 9		 -0.53 0.33 -0.31
112 AT2G21470 SUMO-activating enzyme 2 SUMO-ACTIVATING ENZYME 2, EMBRYO
DEFECTIVE 2764, SUMO-activating
enzyme 2		 -0.53 0.31 -0.33
113 AT5G43230 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G01810.3); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.53 0.3 -0.33
114 AT3G21410 F-box and associated interaction domains-containing protein -0.53 0.32 -0.31
115 AT2G04710 transposable element gene -0.53 0.3 -0.3
116 AT5G25550 Leucine-rich repeat (LRR) family protein 0.53 0.32 -0.31
117 AT5G47970 Aldolase-type TIM barrel family protein -0.53 0.32 -0.29
118 AT5G19710 BEST Arabidopsis thaliana protein match is: HPT
phosphotransmitter 4 (TAIR:AT3G16360.2); Has 1807 Blast
hits to 1807 proteins in 277 species: Archae - 0; Bacteria
- 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 0.53 0.33 -0.31
119 AT4G28130 diacylglycerol kinase 6 ATDGK6, diacylglycerol kinase 6 0.53 0.32 -0.3
Metabolite information
Help   
  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
120 C0108 GMP - GMP guanine and guanosine salvage II,
guanosine nucleotides degradation I,
guanosine nucleotides degradation II,
guanine and guanosine salvage III,
purine nucleotides de novo biosynthesis II,
purine nucleotide metabolism (phosphotransfer and nucleotide modification) 		0.63 0.44 -0.46 C0108