AT3G32940 : -
Query Information
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AGICode AT3G32940
Description RNA-binding KH domain-containing protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G32940 RNA-binding KH domain-containing protein 1 0.34 -0.31
2 AT5G61140 U5 small nuclear ribonucleoprotein helicase 0.77 0.3 -0.33
3 AT3G50370 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 26 plant
structures; EXPRESSED DURING: 15 growth stages; Has 27734
Blast hits to 16708 proteins in 1259 species: Archae - 81;
Bacteria - 3434; Metazoa - 10876; Fungi - 2514; Plants -
987; Viruses - 212; Other Eukaryotes - 9630 (source: NCBI
BLink).		 0.74 0.32 -0.32
4 AT3G11960 Cleavage and polyadenylation specificity factor (CPSF) A
subunit protein		 0.74 0.33 -0.32
5 AT5G18950 Tetratricopeptide repeat (TPR)-like superfamily protein 0.74 0.31 -0.32
6 AT4G17140 pleckstrin homology (PH) domain-containing protein 0.73 0.32 -0.31
7 AT1G78530 Protein kinase superfamily protein -0.72 0.31 -0.31
8 AT2G04450 nudix hydrolase homolog 6 nudix hydrolase homolog 6,
Arabidopsis thaliana nucleoside
diphosphate linked to some moiety
X 6, nudix hydrolase homolog 6,
nucleoside diphosphates linked to
some moiety X 6		 -0.71 0.34 -0.3
9 AT4G38200 SEC7-like guanine nucleotide exchange family protein 0.71 0.32 -0.3
10 AT1G71760 unknown protein; Has 92 Blast hits to 92 proteins in 41
species: Archae - 0; Bacteria - 0; Metazoa - 44; Fungi - 0;
Plants - 32; Viruses - 0; Other Eukaryotes - 16 (source:
NCBI BLink).		 -0.71 0.32 -0.33
11 AT1G20980 squamosa promoter binding protein-like 14 SQUAMOSA PROMOTER BINDING
PROTEIN-LIKE 14, FBR6, squamosa
promoter binding protein-like 14,
SPL1R2		 0.71 0.3 -0.33
12 AT5G11040 TRS120 AtTRS120, TRS120 0.71 0.32 -0.32
13 AT2G07360 SH3 domain-containing protein 0.71 0.34 -0.32
14 AT5G35900 LOB domain-containing protein 35 LOB domain-containing protein 35 -0.7 0.3 -0.32
15 AT1G07880 Protein kinase superfamily protein ATMPK13 -0.7 0.34 -0.31
16 AT1G26110 decapping 5 decapping 5 0.69 0.29 -0.31
17 AT1G74710 ADC synthase superfamily protein ARABIDOPSIS ISOCHORISMATE SYNTHASE
1, ENHANCED DISEASE SUSCEPTIBILITY
TO ERYSIPHE ORONTII 16,
ISOCHORISMATE SYNTHASE 1,
SALICYLIC ACID INDUCTION DEFICIENT
2		 -0.69 0.32 -0.34
18 AT3G15980 Coatomer, beta' subunit 0.68 0.32 -0.32
19 AT1G48970 NagB/RpiA/CoA transferase-like superfamily protein 0.68 0.29 -0.3
20 AT3G05210 nucleotide repair protein, putative ERCC1, UV REPAIR DEFICIENT 7 0.68 0.33 -0.31
21 AT1G50470 F-box associated ubiquitination effector family protein 0.68 0.32 -0.32
22 AT4G01290 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 15 growth stages; Has 1744
Blast hits to 1308 proteins in 219 species: Archae - 0;
Bacteria - 241; Metazoa - 793; Fungi - 253; Plants - 108;
Viruses - 0; Other Eukaryotes - 349 (source: NCBI BLink).		 0.68 0.32 -0.32
23 AT4G36140 disease resistance protein (TIR-NBS-LRR class), putative 0.68 0.32 -0.31
24 AT5G43130 TBP-associated factor 4 TBP-associated factor 4,
TBP-associated factor 4B		 0.68 0.3 -0.32
25 AT4G00660 RNAhelicase-like 8 ATRH8, RNAhelicase-like 8 0.68 0.31 -0.32
26 AT3G50590 Transducin/WD40 repeat-like superfamily protein 0.67 0.33 -0.31
27 AT5G34895 transposable element gene -0.67 0.29 -0.32
28 AT2G32980 unknown protein; Has 158 Blast hits to 154 proteins in 73
species: Archae - 0; Bacteria - 61; Metazoa - 0; Fungi - 0;
Plants - 55; Viruses - 28; Other Eukaryotes - 14 (source:
NCBI BLink).		 -0.67 0.33 -0.3
29 AT2G40740 WRKY DNA-binding protein 55 WRKY DNA-BINDING PROTEIN 55, WRKY
DNA-binding protein 55		 0.67 0.32 -0.32
30 AT2G02160 CCCH-type zinc finger family protein 0.67 0.31 -0.3
31 AT5G56290 peroxin 5 ARABIDOPSIS PEROXIN 5, EMBRYO
DEFECTIVE 2790, peroxin 5		 0.66 0.3 -0.3
32 AT5G25520 SPOC domain / Transcription elongation factor S-II protein 0.66 0.33 -0.33
33 AT2G02560 cullin-associated and neddylation dissociated CULLIN-ASSOCIATED AND NEDDYLATION
DISSOCIATED 1, cullin-associated
and neddylation dissociated, ETA2,
HEMIVENATA, TIP120		 0.66 0.31 -0.33
34 AT2G33620 AT hook motif DNA-binding family protein -0.66 0.31 -0.32
35 AT4G10000 Thioredoxin family protein -0.65 0.32 -0.33
36 AT4G34500 Protein kinase superfamily protein -0.65 0.32 -0.32
37 AT1G23350 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 -0.65 0.32 -0.31
38 AT3G02260 auxin transport protein (BIG) ATTENUATED SHADE AVOIDANCE 1, BIG,
CORYMBOSA1, DARK OVER-EXPRESSION
OF CAB 1, LOW PHOSPHATE-RESISTANT
ROOT 1, TRANSPORT INHIBITOR
RESPONSE 3, UMBRELLA 1		 0.65 0.32 -0.31
39 AT1G05380 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc
finger protein		 0.65 0.31 -0.31
40 AT2G25730 unknown protein; Has 157 Blast hits to 144 proteins in 62
species: Archae - 0; Bacteria - 0; Metazoa - 101; Fungi -
0; Plants - 35; Viruses - 0; Other Eukaryotes - 21 (source:
NCBI BLink).		 0.65 0.34 -0.3
41 AT1G53350 Disease resistance protein (CC-NBS-LRR class) family -0.65 0.33 -0.3
42 AT4G11110 SPA1-related 2 SPA1-related 2 0.64 0.31 -0.3
43 AT2G17930 Phosphatidylinositol 3- and 4-kinase family protein with
FAT domain		 0.64 0.33 -0.32
44 AT3G49150 F-box/RNI-like superfamily protein 0.64 0.32 -0.3
45 AT2G44690 Arabidopsis RAC-like 9 Arabidopsis RAC-like 9,
RHO-RELATED PROTEIN FROM PLANTS 8,
RHO-RELATED PROTEIN FROM PLANTS 8		 -0.64 0.32 -0.32
46 AT5G23260 K-box region and MADS-box transcription factor family
protein 		ARABIDOPSIS BSISTER, AGAMOUS-like
32, TRANSPARENT TESTA16		 -0.64 0.3 -0.32
47 AT3G62180 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 -0.64 0.32 -0.34
48 AT1G61840 Cysteine/Histidine-rich C1 domain family protein -0.63 0.31 -0.31
49 AT1G32480 isocitrate dehydrogenase IV isocitrate dehydrogenase IV 0.63 0.34 -0.32
50 AT3G27700 zinc finger (CCCH-type) family protein / RNA recognition
motif (RRM)-containing protein		 0.63 0.31 -0.3
51 AT2G47660 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.63 0.35 -0.32
52 AT1G32270 syntaxin, putative ATSYP24, SYNTAXIN 24 -0.63 0.31 -0.31
53 AT1G08090 nitrate transporter 2:1 ACH1, NITRATE TRANSPORTER 2.1,
nitrate transporter 2:1, LATERAL
ROOT INITIATION 1, NITRATE
TRANSPORTER 2, NITRATE TRANSPORTER
2.1, nitrate transporter 2:1,
NRT2;1AT		 -0.63 0.31 -0.33
54 AT4G25970 phosphatidylserine decarboxylase 3 phosphatidylserine decarboxylase 3 0.63 0.34 -0.33
55 AT2G44000 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 -0.62 0.32 -0.32
56 AT3G04740 RNA polymerase II transcription mediators ARABIDOPSIS MEDIATOR COMPONENTS
14, MEDIATOR COMPONENTS 14,
STRUWWELPETER		 0.62 0.31 -0.31
57 AT1G01960 SEC7-like guanine nucleotide exchange family protein embryo sac development arrest 10 0.62 0.3 -0.31
58 AT2G38970 Zinc finger (C3HC4-type RING finger) family protein -0.62 0.31 -0.27
59 AT3G15430 Regulator of chromosome condensation (RCC1) family protein 0.62 0.32 -0.33
60 AT5G58040 homolog of yeast FIP1 [V] homolog of yeast FIP1 [V],
ATFIPS5, homolog of yeast FIP1
[V], FIPS5		 0.62 0.3 -0.33
61 AT1G13470 Protein of unknown function (DUF1262) -0.62 0.33 -0.32
62 AT5G53800 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.62 0.31 -0.31
63 AT3G45630 RNA binding (RRM/RBD/RNP motifs) family protein 0.62 0.32 -0.32
64 AT5G58410 HEAT/U-box domain-containing protein 0.62 0.32 -0.33
65 AT4G29090 Ribonuclease H-like superfamily protein 0.62 0.31 -0.31
66 AT5G04460 RING/U-box superfamily protein 0.62 0.33 -0.29
67 AT3G22170 far-red elongated hypocotyls 3 far-red elongated hypocotyls 3 0.62 0.31 -0.33
68 AT4G22140 PHD finger family protein / bromo-adjacent homology (BAH)
domain-containing protein		 EARLY BOLTING IN SHORT DAYS -0.62 0.32 -0.33
69 AT1G21630 Calcium-binding EF hand family protein 0.61 0.34 -0.31
70 AT2G20805 BEST Arabidopsis thaliana protein match is: DNA-binding
storekeeper protein-related transcriptional regulator
(TAIR:AT1G11510.1); Has 47 Blast hits to 47 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.61 0.31 -0.33
71 AT5G26330 Cupredoxin superfamily protein -0.61 0.31 -0.32
72 AT3G22810 Plant protein of unknown function (DUF828) with plant
pleckstrin homology-like region		 -0.61 0.3 -0.29
73 AT5G48740 Leucine-rich repeat protein kinase family protein -0.61 0.32 -0.32
74 AT2G16485 nucleic acid binding;zinc ion binding;DNA binding 0.61 0.31 -0.32
75 AT4G27710 cytochrome P450, family 709, subfamily B, polypeptide 3 cytochrome P450, family 709,
subfamily B, polypeptide 3		 -0.61 0.31 -0.28
76 AT1G05960 ARM repeat superfamily protein 0.61 0.31 -0.32
77 AT1G28327 unknown protein; Has 52 Blast hits to 52 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.61 0.3 -0.31
78 AT3G02930 Plant protein of unknown function (DUF827) 0.61 0.33 -0.31
79 AT4G35800 RNA polymerase II large subunit RNA polymerase II large subunit,
RNA POLYMERASE II LARGE SUBUNIT,
RNA_POL_II_LSRNA_POL_II_LS, RNA
POLYMERASE II LARGE SUBUNIT		 0.61 0.3 -0.32
80 AT2G10780 transposable element gene -0.61 0.3 -0.35
81 AT1G20180 Protein of unknown function (DUF677) 0.61 0.32 -0.32
82 AT5G59860 RNA-binding (RRM/RBD/RNP motifs) family protein 0.61 0.32 -0.33
83 AT4G02480 AAA-type ATPase family protein 0.6 0.3 -0.32
84 AT1G56620 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 -0.6 0.34 -0.29
85 AT5G48120 ARM repeat superfamily protein 0.6 0.33 -0.35
86 AT2G31970 DNA repair-recombination protein (RAD50) ATRAD50, RAD50 0.6 0.28 -0.31
87 AT2G23330 transposable element gene 0.6 0.3 -0.3
88 AT1G69400 Transducin/WD40 repeat-like superfamily protein -0.6 0.32 -0.31
89 AT1G77300 histone methyltransferases(H3-K4 specific);histone
methyltransferases(H3-K36 specific)		 ASH1 HOMOLOG 2, CAROTENOID
CHLOROPLAST REGULATORY1, EARLY
FLOWERING IN SHORT DAYS, LAZARUS
2, SET DOMAIN GROUP 8		 0.6 0.34 -0.3
90 AT2G15280 Reticulon family protein -0.59 0.33 -0.33
91 AT5G52760 Copper transport protein family -0.59 0.34 -0.32
92 AT1G35647 transposable element gene -0.59 0.33 -0.33
93 AT1G29600 Zinc finger C-x8-C-x5-C-x3-H type family protein -0.59 0.29 -0.31
94 AT1G60350 NAC domain containing protein 24 NAC domain containing protein 24,
NAC domain containing protein 24		 -0.58 0.32 -0.32
95 AT2G38870 Serine protease inhibitor, potato inhibitor I-type family
protein		 -0.58 0.3 -0.31
96 AT1G67320 DNA primase, large subunit family EMBRYO DEFECTIVE 2813 -0.58 0.3 -0.31
97 AT4G10280 RmlC-like cupins superfamily protein -0.58 0.31 -0.31
98 AT5G15581 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: leaf apex; Has
30201 Blast hits to 17322 proteins in 780 species: Archae -
12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.58 0.33 -0.3
99 AT1G15890 Disease resistance protein (CC-NBS-LRR class) family -0.58 0.32 -0.3
100 AT3G42250 transposable element gene -0.58 0.32 -0.32
101 AT3G13720 PRA1 (Prenylated rab acceptor) family protein PRENYLATED RAB ACCEPTOR 1.F3, PRA8 -0.58 0.32 -0.32
102 AT2G15042 Leucine-rich repeat (LRR) family protein -0.57 0.34 -0.33
103 AT5G66740 Protein of unknown function (DUF620) -0.57 0.3 -0.34
104 AT3G12170 Chaperone DnaJ-domain superfamily protein -0.57 0.32 -0.32
105 AT1G16530 ASYMMETRIC LEAVES 2-like 9 ASYMMETRIC LEAVES 2-like 9, LOB
DOMAIN-CONTAINING PROTEIN 3		 -0.57 0.33 -0.31
106 AT1G32840 transposable element gene -0.57 0.34 -0.34
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
107 C0194 Phenylalanine D,L-Phenylalanine L-Phenylalanine suberin biosynthesis,
benzoate biosynthesis II (CoA-independent, non-beta-oxidative),
indole-3-acetyl-amino acid biosynthesis,
phenylalanine degradation III,
jasmonoyl-amino acid conjugates biosynthesis I,
trans-cinnamoyl-CoA biosynthesis,
phenylethanol biosynthesis,
phenylalanine biosynthesis II,
tRNA charging,
IAA degradation V,
glucosinolate biosynthesis from phenylalanine,
phenylpropanoid biosynthesis, initial reactions 		0.6 0.33 -0.3 C0194
108 C0242 Suberic acid - - - -0.6 0.43 -0.47