AT3G20010 : -
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AGICode AT3G20010
Description SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G20010 SNF2 domain-containing protein / helicase domain-containing
protein / zinc finger protein-related
1 0.31 -0.34
2 AT5G11860 SCP1-like small phosphatase 5 SCP1-like small phosphatase 5 -0.82 0.3 -0.32
3 AT3G06100 NOD26-like intrinsic protein 7;1 NOD26-like intrinsic protein 7;1,
NOD26-LIKE MIP 6, NOD26-LIKE MIP 8
-0.82 0.33 -0.31
4 AT4G20330 Transcription initiation factor TFIIE, beta subunit -0.81 0.31 -0.32
5 AT3G18630 uracil dna glycosylase uracil dna glycosylase, uracil dna
glycosylase
0.8 0.33 -0.31
6 AT5G03030 Chaperone DnaJ-domain superfamily protein -0.79 0.31 -0.35
7 AT3G54840 Ras-related small GTP-binding family protein ARA-6, ARA6, ATRAB5C, ATRABF1,
RABF1
-0.79 0.3 -0.34
8 AT5G59140 BTB/POZ domain-containing protein -0.78 0.32 -0.31
9 AT1G49300 RAB GTPase homolog G3E ARABIDOPSIS RAB GTPASE HOMOLOG 7,
ARABIDOPSIS RAB GTPASE HOMOLOG
G3E, RAB GTPase homolog G3E
-0.78 0.32 -0.29
10 AT5G11680 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: cytosol, plasma
membrane; EXPRESSED IN: 26 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
WW-domain-binding protein (InterPro:IPR018826); Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
-0.78 0.29 -0.32
11 AT1G09430 ATP-citrate lyase A-3 ATP-citrate lyase A-3 -0.78 0.29 -0.3
12 AT1G04960 Protein of unknown function (DUF1664) -0.78 0.33 -0.32
13 AT5G13000 glucan synthase-like 12 glucan synthase-like 12, callose
synthase 3, gsl12, glucan
synthase-like 12
0.77 0.31 -0.33
14 AT1G50670 OTU-like cysteine protease family protein -0.77 0.32 -0.32
15 AT5G22360 vesicle-associated membrane protein 714 vesicle-associated membrane
protein 714, VAMP714,
vesicle-associated membrane
protein 714
-0.77 0.32 -0.35
16 AT4G39660 alanine:glyoxylate aminotransferase 2 alanine:glyoxylate
aminotransferase 2
-0.77 0.32 -0.3
17 AT1G71100 Ribose 5-phosphate isomerase, type A protein RADIAL SWELLING 10 -0.77 0.3 -0.3
18 AT3G22290 Endoplasmic reticulum vesicle transporter protein -0.77 0.32 -0.31
19 AT3G60130 beta glucosidase 16 beta glucosidase 16 -0.77 0.28 -0.32
20 AT5G47200 RAB GTPase homolog 1A RAB GTPase homolog 1A, ARABIDOPSIS
RAB GTPASE HOMOLOG D2B, RAB GTPase
homolog 1A
-0.77 0.32 -0.31
21 AT1G12140 flavin-monooxygenase glucosinolate S-oxygenase 5 flavin-monooxygenase glucosinolate
S-oxygenase 5
-0.77 0.31 -0.29
22 AT3G10260 Reticulon family protein -0.76 0.32 -0.31
23 AT2G31350 glyoxalase 2-5 glyoxalase 2-5 -0.76 0.31 -0.3
24 AT4G17170 RAB GTPase homolog B1C AT-RAB2, ARABIDOPSIS RAB GTPASE
HOMOLOG B1B, ATRAB2A, ATRABB1C,
RAB GTPASE HOMOLOG B1B, RAB2A, RAB
GTPase homolog B1C
-0.76 0.31 -0.32
25 AT1G76130 alpha-amylase-like 2 alpha-amylase-like 2, ARABIDOPSIS
THALIANA ALPHA-AMYLASE-LIKE 2
-0.76 0.31 -0.31
26 AT4G35860 GTP-binding 2 GTP-binding 2, ATRAB2C, ATRABB1B,
GTP-binding 2
-0.76 0.31 -0.31
27 AT4G14490 SMAD/FHA domain-containing protein 0.75 0.33 -0.34
28 AT3G27430 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
superfamily protein
PBB1 -0.75 0.32 -0.33
29 AT1G71190 senescence associated gene 18 senescence associated gene 18 -0.75 0.33 -0.3
30 AT5G17650 glycine/proline-rich protein -0.75 0.3 -0.3
31 AT1G03950 vacuolar protein sorting-associated protein 2.3 vacuolar protein
sorting-associated protein 2.3
-0.75 0.31 -0.33
32 AT2G17760 Eukaryotic aspartyl protease family protein -0.75 0.29 -0.32
33 AT2G36330 Uncharacterised protein family (UPF0497) -0.75 0.32 -0.34
34 AT1G23440 Peptidase C15, pyroglutamyl peptidase I-like -0.75 0.31 -0.31
35 AT1G78560 Sodium Bile acid symporter family -0.74 0.32 -0.32
36 AT3G29350 histidine-containing phosphotransmitter 2 histidine-containing
phosphotransmitter 2
-0.74 0.31 -0.31
37 AT4G02860 Phenazine biosynthesis PhzC/PhzF protein -0.74 0.3 -0.33
38 AT4G13270 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family
-0.74 0.31 -0.31
39 AT3G02520 general regulatory factor 7 GF14 NU, general regulatory factor
7
-0.74 0.33 -0.33
40 AT5G16440 isopentenyl diphosphate isomerase 1 isopentenyl diphosphate isomerase
1
-0.74 0.32 -0.31
41 AT2G40960 Single-stranded nucleic acid binding R3H protein 0.74 0.31 -0.3
42 AT3G22780 Tesmin/TSO1-like CXC domain-containing protein ATTSO1, CHINESE FOR 'UGLY' 0.74 0.32 -0.29
43 AT4G32040 KNOTTED1-like homeobox gene 5 KNOTTED1-like homeobox gene 5 -0.74 0.3 -0.31
44 AT5G59890 actin depolymerizing factor 4 actin depolymerizing factor 4,
ATADF4
-0.74 0.3 -0.31
45 AT2G44525 Protein of unknown function (DUF498/DUF598) -0.73 0.3 -0.32
46 AT1G29850 double-stranded DNA-binding family protein -0.73 0.31 -0.31
47 AT5G13810 Glutaredoxin family protein -0.73 0.31 -0.31
48 AT4G08930 APR-like 6 APR-like 6, APR-like 6 -0.73 0.31 -0.31
49 AT5G41560 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15
growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin
ligase, Det1/DDB1-complexing (InterPro:IPR018276); Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
-0.73 0.31 -0.33
50 AT5G10800 RNA recognition motif (RRM)-containing protein 0.73 0.3 -0.32
51 AT2G34810 FAD-binding Berberine family protein -0.73 0.32 -0.32
52 AT5G12890 UDP-Glycosyltransferase superfamily protein -0.73 0.3 -0.31
53 AT3G54300 vesicle-associated membrane protein 727 vesicle-associated membrane
protein 727, VAMP727,
vesicle-associated membrane
protein 727
-0.73 0.32 -0.31
54 AT5G56760 serine acetyltransferase 1;1 serine acetyltransferase 1;1,
SERINE ACETYLTRANSFERASE 52,
SERINE ACETYLTRANSFERASE 5, serine
acetyltransferase 1;1
-0.73 0.32 -0.32
55 AT3G17880 tetraticopeptide domain-containing thioredoxin ARABIDOPSIS THALIANA
HSP70-INTERACTING PROTEIN 2,
tetraticopeptide domain-containing
thioredoxin, HSC-70 INTERACTING
PROTEIN, tetraticopeptide
domain-containing thioredoxin
-0.72 0.29 -0.32
56 AT1G14000 VH1-interacting kinase VH1-interacting kinase -0.72 0.33 -0.33
57 AT5G48360 Actin-binding FH2 (formin homology 2) family protein 0.72 0.31 -0.31
58 AT3G52560 ubiquitin E2 variant 1D-4 MMS2 ZWEI HOMOLOGUE 4, UBIQUITIN
E2 VARIANT 1D, ubiquitin E2
variant 1D-4
-0.72 0.34 -0.31
59 AT3G11780 MD-2-related lipid recognition domain-containing protein /
ML domain-containing protein
-0.72 0.32 -0.33
60 AT1G06650 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein
-0.72 0.31 -0.33
61 AT1G10500 chloroplast-localized ISCA-like protein chloroplast-localized ISCA-like
protein, chloroplast-localized
ISCA-like protein
-0.72 0.3 -0.31
62 AT3G22890 ATP sulfurylase 1 ATP sulfurylase 1 -0.72 0.3 -0.34
63 AT1G28680 HXXXD-type acyl-transferase family protein -0.72 0.3 -0.32
64 AT1G28200 FH interacting protein 1 FH interacting protein 1 -0.72 0.31 -0.3
65 AT3G17410 Protein kinase superfamily protein -0.72 0.32 -0.3
66 AT3G10920 manganese superoxide dismutase 1 ARABIDOPSIS MANGANESE SUPEROXIDE
DISMUTASE 1, MATERNAL EFFECT
EMBRYO ARREST 33, manganese
superoxide dismutase 1
-0.72 0.29 -0.31
67 AT1G22300 general regulatory factor 10 14-3-3 PROTEIN G-BOX FACTOR14
EPSILON, GF14 EPSILON, general
regulatory factor 10
-0.72 0.31 -0.33
68 AT4G15470 Bax inhibitor-1 family protein -0.71 0.33 -0.32
69 AT1G63100 GRAS family transcription factor 0.71 0.32 -0.31
70 AT1G10700 phosphoribosyl pyrophosphate (PRPP) synthase 3 phosphoribosyl pyrophosphate
(PRPP) synthase 3
-0.71 0.32 -0.31
71 AT3G46460 ubiquitin-conjugating enzyme 13 ubiquitin-conjugating enzyme 13 -0.71 0.35 -0.32
72 AT5G06260 TLD-domain containing nucleolar protein -0.71 0.33 -0.33
73 AT3G55140 Pectin lyase-like superfamily protein -0.71 0.32 -0.33
74 AT1G79210 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
superfamily protein
-0.71 0.32 -0.31
75 AT1G12810 proline-rich family protein -0.71 0.31 -0.3
76 AT1G13900 Purple acid phosphatases superfamily protein -0.71 0.29 -0.3
77 AT5G53650 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink).
-0.71 0.31 -0.32
78 AT4G30530 Class I glutamine amidotransferase-like superfamily protein gamma-glutamyl peptidase 1 -0.71 0.3 -0.31
79 AT2G27040 Argonaute family protein ARGONAUTE 4, OVEREXPRESSOR OF
CATIONIC PEROXIDASE 11
0.71 0.32 -0.33
80 AT1G69570 Dof-type zinc finger DNA-binding family protein -0.71 0.29 -0.3
81 AT5G11810 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).
-0.71 0.31 -0.33
82 AT1G76490 hydroxy methylglutaryl CoA reductase 1 AtHMGR1, hydroxy methylglutaryl
CoA reductase 1,
3-HYDROXY-3-METHYLGLUTARYL COA
REDUCTASE 1
-0.71 0.33 -0.31
83 AT5G13550 sulfate transporter 4.1 sulfate transporter 4.1 -0.7 0.31 -0.31
84 AT3G15352 cytochrome c oxidase 17 ARABIDOPSIS THALIANA CYTOCHROME C
OXIDASE 17, cytochrome c oxidase
17
-0.7 0.33 -0.33
85 AT2G35010 thioredoxin O1 thioredoxin O1, thioredoxin O1 -0.7 0.31 -0.31
86 AT1G70700 TIFY domain/Divergent CCT motif family protein JASMONATE-ZIM-DOMAIN PROTEIN 9,
TIFY7
-0.7 0.32 -0.3
87 AT3G03740 BTB-POZ and MATH domain 4 BTB-POZ AND MATH DOMAIN 4, BTB-POZ
and MATH domain 4
-0.7 0.31 -0.31
88 AT1G16670 Protein kinase superfamily protein -0.7 0.32 -0.31
89 AT5G11960 Protein of unknown function (DUF803) -0.7 0.32 -0.35
90 AT3G09810 isocitrate dehydrogenase VI isocitrate dehydrogenase VI -0.7 0.31 -0.32
91 AT4G32930 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF866, eukaryotic (InterPro:IPR008584);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
(source: NCBI BLink).
-0.7 0.31 -0.32
92 AT1G17080 Ribosomal protein L18ae family -0.7 0.31 -0.29
93 AT5G03520 RAB GTPase homolog 8C ARABIDOPSIS RAB HOMOLOG E1D, RAB
GTPase homolog 8C, ATRABE1D, RAB
HOMOLOG E1D, RAB GTPase homolog 8C
-0.7 0.32 -0.3
94 AT1G56450 20S proteasome beta subunit G1 20S proteasome beta subunit G1 -0.7 0.31 -0.32
95 AT3G24200 FAD/NAD(P)-binding oxidoreductase family protein -0.7 0.31 -0.29
96 AT5G11770 NADH-ubiquinone oxidoreductase 20 kDa subunit,
mitochondrial
-0.7 0.33 -0.31
97 AT2G29960 cyclophilin 5 ARABIDOPSIS THALIANA CYCLOPHILIN
5, CYCLOPHILIN 19-4, cyclophilin 5
-0.7 0.32 -0.32
98 AT2G26800 Aldolase superfamily protein -0.7 0.32 -0.29
99 AT1G64740 alpha-1 tubulin alpha-1 tubulin -0.7 0.32 -0.3
100 AT5G42980 thioredoxin 3 thioredoxin H-type 3, thioredoxin
3, ATTRXH3, thioredoxin 3,
THIOREDOXIN H3
-0.7 0.32 -0.31
101 AT2G47470 thioredoxin family protein ARABIDOPSIS THALIANA PROTEIN
DISULFIDE ISOMERASE 11, PDI-LIKE
2-1, MATERNAL EFFECT EMBRYO ARREST
30, PROTEIN DISULFIDE ISOMERASE
11, UNFERTILIZED EMBRYO SAC 5
-0.7 0.34 -0.3
102 AT1G06740 transposable element gene 0.7 0.31 -0.3
103 AT3G60820 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
superfamily protein
PBF1 -0.7 0.33 -0.32
104 AT2G39780 ribonuclease 2 ribonuclease 2 -0.7 0.31 -0.32
105 AT1G55540 Nuclear pore complex protein 0.69 0.29 -0.32
106 AT3G28730 high mobility group high mobility group, high mobility
group, NUCLEOSOME/CHROMATIN
ASSEMBLY FACTOR D, SSRP1
0.69 0.31 -0.29
107 AT1G05950 unknown protein; Has 50 Blast hits to 45 proteins in 14
species: Archae - 5; Bacteria - 0; Metazoa - 4; Fungi - 0;
Plants - 34; Viruses - 0; Other Eukaryotes - 7 (source:
NCBI BLink).
0.68 0.32 -0.31
108 AT1G17460 TRF-like 3 TRF-like 3 0.68 0.31 -0.34
109 AT4G19470 Leucine-rich repeat (LRR) family protein 0.68 0.32 -0.33
110 AT2G45700 sterile alpha motif (SAM) domain-containing protein 0.68 0.32 -0.3
111 AT3G52170 DNA binding 0.67 0.31 -0.31
112 AT5G20540 BREVIS RADIX-like 4 BREVIS RADIX-like 4, BRX-LIKE4,
BREVIS RADIX-like 4
0.66 0.32 -0.31
113 AT1G53720 cyclophilin 59 CYCLOPHILIN 59, cyclophilin 59 0.66 0.31 -0.31
114 AT5G63920 topoisomerase 3alpha AtTOP3alpha, topoisomerase 3alpha 0.66 0.35 -0.31
115 AT3G51480 glutamate receptor 3.6 glutamate receptor 3.6, GLR3.6,
glutamate receptor 3.6
0.66 0.32 -0.33
116 AT4G14970 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED
DURING: 6 growth stages; Has 257 Blast hits to 164 proteins
in 70 species: Archae - 0; Bacteria - 4; Metazoa - 189;
Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 26
(source: NCBI BLink).
0.65 0.31 -0.29
117 AT3G25500 formin homology 1 formin homology 1, AHF1,
ARABIDOPSIS THALIANA FORMIN
HOMOLOGY 1, FORMIN HOMOLOGY 1
0.65 0.31 -0.32
118 AT1G16070 tubby like protein 8 tubby like protein 8, tubby like
protein 8
0.65 0.33 -0.31
119 AT2G19930 RNA-dependent RNA polymerase family protein 0.65 0.31 -0.3
120 AT2G44830 Protein kinase superfamily protein 0.64 0.33 -0.32
121 AT5G65700 Leucine-rich receptor-like protein kinase family protein BARELY ANY MERISTEM 1 0.64 0.31 -0.33
122 AT2G25270 unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN:
18 plant structures; EXPRESSED DURING: 13 growth stages;
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT2G12400.1); Has 35333 Blast hits to 34131 proteins
in 2444 species: Archae - 798; Bacteria - 22429; Metazoa -
974; Fungi - 991; Plants - 531; Viruses - 0; Other
Eukaryotes - 9610 (source: NCBI BLink).
0.64 0.31 -0.33
123 AT4G24790 AAA-type ATPase family protein 0.64 0.29 -0.32
124 AT1G69440 Argonaute family protein ARGONAUTE7, ZIPPY 0.64 0.32 -0.33
125 AT2G27120 DNA polymerase epsilon catalytic subunit POL2B, TILTED 2 0.64 0.34 -0.29
126 AT5G03450 Transducin/WD40 repeat-like superfamily protein 0.64 0.31 -0.31
127 AT2G40070 BEST Arabidopsis thaliana protein match is: proline-rich
family protein (TAIR:AT3G09000.1); Has 35333 Blast hits to
34131 proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses -
0; Other Eukaryotes - 9610 (source: NCBI BLink).
0.64 0.33 -0.35
128 AT4G27510 unknown protein; Has 25 Blast hits to 23 proteins in 8
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).
0.63 0.32 -0.3
129 AT5G22750 DNA/RNA helicase protein RAD5, RAD5A 0.63 0.32 -0.32
130 AT1G05160 cytochrome P450, family 88, subfamily A, polypeptide 3 ATKAO1, cytochrome P450, family
88, subfamily A, polypeptide 3,
ENT-KAURENOIC ACID OXYDASE 1
0.63 0.32 -0.34
131 AT5G44800 chromatin remodeling 4 chromatin remodeling 4, PICKLE
RELATED 1
0.63 0.32 -0.32
132 AT1G79880 RNA recognition motif (RRM)-containing protein 0.62 0.32 -0.31
133 AT2G17410 ARID/BRIGHT DNA-binding domain-containing protein 0.62 0.32 -0.31
134 AT1G63640 P-loop nucleoside triphosphate hydrolases superfamily
protein with CH (Calponin Homology) domain
0.62 0.33 -0.35
135 AT1G07340 sugar transporter 2 sugar transporter 2, sugar
transporter 2
0.62 0.31 -0.32
136 AT5G47600 HSP20-like chaperones superfamily protein 0.62 0.3 -0.32
137 AT5G63540 Domain of unknown function (DUF1767) ATRMI1, BLAP75, RECQ MEDIATED
INSTABILITY 1
0.62 0.31 -0.31
138 AT1G80870 Protein kinase superfamily protein 0.62 0.32 -0.31
139 AT4G00990 Transcription factor jumonji (jmjC) domain-containing
protein
0.62 0.33 -0.33
140 AT5G49430 WD40/YVTN repeat-like-containing domain;Bromodomain 0.61 0.33 -0.33
141 AT5G65440 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT4G24610.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).
0.61 0.29 -0.31
142 AT5G40920 pseudogene, disease resistance protein (TIR-NBS-LRR class),
putative, domain signature TIR-NBS-LRR exists, suggestive
of a disease resistance protein.
0.61 0.29 -0.31
143 AT5G01270 carboxyl-terminal domain (ctd) phosphatase-like 2 ATCPL2, carboxyl-terminal domain
(ctd) phosphatase-like 2
0.61 0.32 -0.31
144 AT1G51170 Protein kinase superfamily protein 0.61 0.3 -0.32
145 AT5G27940 WPP domain protein 3 WPP domain protein 3 0.61 0.3 -0.31
146 AT5G02520 CONTAINS InterPro DOMAIN/s: SANT associated
(InterPro:IPR015216); BEST Arabidopsis thaliana protein
match is: kinase interacting family protein
(TAIR:AT1G58210.1); Has 842 Blast hits to 736 proteins in
154 species: Archae - 2; Bacteria - 99; Metazoa - 236;
Fungi - 52; Plants - 90; Viruses - 0; Other Eukaryotes -
363 (source: NCBI BLink).
0.61 0.33 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
147 C0188 Nicotine (-)-Nicotine Nicotine - 0.66 0.45 -0.46 C0188