AT3G52170 : -
Query Information
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AGICode AT3G52170
Description DNA binding
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G52170 DNA binding 1 0.3 -0.29
2 AT1G63680 acid-amino acid ligases;ligases;ATP binding;ATP
binding;ligases		 ALBINO OR PALE-GREEN 13, ATMURE,
MURE, PIGMENT DEFECTIVE EMBRYO 316		 0.76 0.3 -0.31
3 AT5G13000 glucan synthase-like 12 glucan synthase-like 12, callose
synthase 3, gsl12, glucan
synthase-like 12		 0.75 0.32 -0.32
4 AT2G05920 Subtilase family protein 0.75 0.34 -0.32
5 AT5G51120 polyadenylate-binding protein 1 POLYADENYLATE-BINDING PROTEIN 1,
polyadenylate-binding protein 1		 0.69 0.33 -0.32
6 AT5G10800 RNA recognition motif (RRM)-containing protein 0.69 0.3 -0.3
7 AT5G63810 beta-galactosidase 10 beta-galactosidase 10 0.69 0.33 -0.3
8 AT3G45620 Transducin/WD40 repeat-like superfamily protein -0.69 0.29 -0.31
9 AT1G63850 BTB/POZ domain-containing protein 0.68 0.32 -0.33
10 AT5G11860 SCP1-like small phosphatase 5 SCP1-like small phosphatase 5 -0.68 0.33 -0.3
11 AT3G14650 cytochrome P450, family 72, subfamily A, polypeptide 11 cytochrome P450, family 72,
subfamily A, polypeptide 11		 0.67 0.32 -0.29
12 AT3G20010 SNF2 domain-containing protein / helicase domain-containing
protein / zinc finger protein-related		 0.67 0.33 -0.33
13 AT3G23020 Tetratricopeptide repeat (TPR)-like superfamily protein 0.66 0.32 -0.31
14 AT5G22750 DNA/RNA helicase protein RAD5, RAD5A 0.66 0.3 -0.31
15 AT4G19470 Leucine-rich repeat (LRR) family protein 0.66 0.32 -0.32
16 AT2G40070 BEST Arabidopsis thaliana protein match is: proline-rich
family protein (TAIR:AT3G09000.1); Has 35333 Blast hits to
34131 proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses -
0; Other Eukaryotes - 9610 (source: NCBI BLink).		 0.66 0.31 -0.33
17 AT2G36490 demeter-like 1 demeter-like 1, REPRESSOR OF
SILENCING1		 0.65 0.3 -0.3
18 AT5G40370 Glutaredoxin family protein glutaredoxin C2 -0.65 0.32 -0.31
19 AT3G22780 Tesmin/TSO1-like CXC domain-containing protein ATTSO1, CHINESE FOR 'UGLY' 0.65 0.3 -0.32
20 AT5G06670 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.64 0.32 -0.31
21 AT2G44525 Protein of unknown function (DUF498/DUF598) -0.64 0.3 -0.31
22 AT3G59380 farnesyltransferase A FARNESYLTRANSFERASE A,
farnesyltransferase A,
PFT/PGGT-IALPHA, PLURIPETALA		 -0.64 0.32 -0.31
23 AT3G43920 dicer-like 3 DICER-LIKE 3, dicer-like 3 0.64 0.32 -0.3
24 AT1G03950 vacuolar protein sorting-associated protein 2.3 vacuolar protein
sorting-associated protein 2.3		 -0.64 0.3 -0.32
25 AT1G72040 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.63 0.33 -0.32
26 AT3G21090 ABC-2 type transporter family protein ATP-binding cassette G15 0.63 0.33 -0.33
27 AT4G01897 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF952 (InterPro:IPR009297); Has 763 Blast
hits to 763 proteins in 180 species: Archae - 0; Bacteria -
351; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0;
Other Eukaryotes - 383 (source: NCBI BLink).		 -0.62 0.33 -0.31
28 AT5G48480 Lactoylglutathione lyase / glyoxalase I family protein 0.62 0.32 -0.32
29 AT1G28010 P-glycoprotein 14 ATP-binding cassette B14,
Arabidopsis thaliana ATP-binding
cassette B14, multi-drug
resistance 12, P-glycoprotein 14		 0.62 0.32 -0.32
30 AT5G11910 alpha/beta-Hydrolases superfamily protein -0.62 0.32 -0.31
31 AT5G19200 NAD(P)-binding Rossmann-fold superfamily protein TSC10B -0.62 0.33 -0.32
32 AT5G11810 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.62 0.31 -0.32
33 AT2G32080 purin-rich alpha 1 purin-rich alpha 1 -0.61 0.33 -0.34
34 AT1G71420 Tetratricopeptide repeat (TPR)-like superfamily protein 0.6 0.32 -0.31
35 AT5G09830 BolA-like family protein -0.6 0.34 -0.32
36 AT2G18770 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.6 0.31 -0.31
37 AT4G02980 endoplasmic reticulum auxin binding protein 1 ABP, endoplasmic reticulum auxin
binding protein 1		 -0.6 0.3 -0.32
38 AT4G26150 cytokinin-responsive gata factor 1 cytokinin-responsive gata factor
1, GATA TRANSCRIPTION FACTOR 22,
GNC-LIKE		 0.6 0.33 -0.33
39 AT5G55370 MBOAT (membrane bound O-acyl transferase) family protein 0.59 0.31 -0.31
40 AT5G55670 RNA-binding (RRM/RBD/RNP motifs) family protein 0.59 0.34 -0.33
41 AT1G53980 Ubiquitin-like superfamily protein -0.58 0.3 -0.31
42 AT1G13110 cytochrome P450, family 71 subfamily B, polypeptide 7 cytochrome P450, family 71
subfamily B, polypeptide 7		 0.58 0.31 -0.3
43 AT2G41650 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 3 Blast hits to 3 proteins in
1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.58 0.33 -0.34
44 AT1G19200 Protein of unknown function (DUF581) -0.57 0.33 -0.3
45 AT4G32120 Galactosyltransferase family protein 0.57 0.32 -0.33
46 AT2G32260 phosphorylcholine cytidylyltransferase ATCCT1, phosphorylcholine
cytidylyltransferase		 -0.57 0.31 -0.31
47 AT2G25710 holocarboxylase synthase 1 holocarboxylase synthase 1 0.57 0.33 -0.3
48 AT1G14950 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 -0.57 0.3 -0.31
49 AT5G46760 Basic helix-loop-helix (bHLH) DNA-binding family protein MYC3 -0.57 0.29 -0.32
50 AT5G14710 CONTAINS InterPro DOMAIN/s: Proteasome assembly chaperone 3
(InterPro:IPR018788); Has 120 Blast hits to 120 proteins in
47 species: Archae - 0; Bacteria - 0; Metazoa - 62; Fungi -
2; Plants - 49; Viruses - 0; Other Eukaryotes - 7 (source:
NCBI BLink).		 -0.57 0.3 -0.32
51 AT1G55520 TATA binding protein 2 A. THALIANA TATA BINDING PROTEIN
2, TATA binding protein 2		 -0.56 0.32 -0.31
52 AT5G23640 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.56 0.31 -0.3
53 AT3G25220 FK506-binding protein 15 kD-1 FK506-binding protein 15 kD-1 -0.56 0.29 -0.34
54 AT4G16460 unknown protein; Has 58 Blast hits to 58 proteins in 23
species: Archae - 0; Bacteria - 0; Metazoa - 30; Fungi - 4;
Plants - 16; Viruses - 0; Other Eukaryotes - 8 (source:
NCBI BLink).		 -0.56 0.32 -0.31
55 AT4G39940 APS-kinase 2 APS-kinase 2,
ADENOSINE-5'-PHOSPHOSULFATE (APS)
KINASE 2		 -0.55 0.33 -0.3
56 AT2G04460 transposable element gene -0.55 0.31 -0.33
57 AT3G22400 PLAT/LH2 domain-containing lipoxygenase family protein Arabidopsis thaliana lipoxygenase
5, LOX5		 -0.55 0.3 -0.33
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
58 C0026 2-Hydroxyisobutyric acid - - β oxidation -0.8 0.46 -0.44
59 C0027 2-Oxoglutaric acid - α-Ketoglutarate gibberellin biosynthesis III (early C-13 hydroxylation),
leucopelargonidin and leucocyanidin biosynthesis,
aspartate degradation II,
ornithine biosynthesis,
isoleucine biosynthesis I (from threonine),
pantothenate biosynthesis,
phenylalanine degradation III,
flavonol biosynthesis,
lysine biosynthesis VI,
luteolin biosynthesis,
ammonia assimilation cycle II,
serine biosynthesis,
flavonoid biosynthesis,
glutamate biosynthesis V,
aspartate biosynthesis,
glutamate degradation I,
gibberellin inactivation I (2beta-hydroxylation),
alanine degradation III,
photorespiration,
valine biosynthesis,
glycine biosynthesis,
arginine biosynthesis II (acetyl cycle),
arginine degradation I (arginase pathway),
gibberellin biosynthesis II (early C-3 hydroxylation),
leucine biosynthesis,
glutamate biosynthesis IV,
tyrosine biosynthesis II,
proline biosynthesis III,
citrulline biosynthesis,
anthocyanin biosynthesis (pelargonidin 3-O-glucoside, cyanidin 3-O-glucoside),
L-Ndelta-acetylornithine biosynthesis,
isoleucine degradation I,
alanine biosynthesis II,
tyrosine biosynthesis I,
TCA cycle variation III (eukaryotic),
leucine degradation I,
alanine degradation II (to D-lactate),
TCA cycle variation V (plant),
arginine degradation VI (arginase 2 pathway),
valine degradation I,
gibberellin biosynthesis I (non C-3, non C-13 hydroxylation),
1,4-dihydroxy-2-naphthoate biosynthesis II (plants),
2-ketoglutarate dehydrogenase complex,
glutamate degradation IV,
tyrosine degradation I,
anthocyanin biosynthesis (delphinidin 3-O-glucoside),
IAA biosynthesis I,
phenylalanine biosynthesis II,
lysine degradation II,
scopoletin biosynthesis,
4-hydroxyphenylpyruvate biosynthesis,
histidine biosynthesis,
glutamine biosynthesis III,
leucodelphinidin biosynthesis 		-0.73 0.41 -0.45 C0027
60 C0068 Citric acid - Citrate acetyl-CoA biosynthesis (from citrate),
TCA cycle variation V (plant),
TCA cycle variation III (eukaryotic),
glutamine biosynthesis III,
glyoxylate cycle 		-0.68 0.33 -0.3 C0068
61 C0243 Succinic acid - Succinate flavonol biosynthesis,
glyoxylate cycle,
gibberellin biosynthesis III (early C-13 hydroxylation),
TCA cycle variation V (plant),
TCA cycle variation III (eukaryotic),
aerobic respiration (alternative oxidase pathway),
gibberellin inactivation I (2beta-hydroxylation),
4-aminobutyrate degradation IV,
luteolin biosynthesis,
anthocyanin biosynthesis (delphinidin 3-O-glucoside),
leucodelphinidin biosynthesis,
glutamate degradation IV,
gibberellin biosynthesis I (non C-3, non C-13 hydroxylation),
succinate + a ubiquinone -> a ubiquinol + fumarate,
gibberellin biosynthesis II (early C-3 hydroxylation),
flavonoid biosynthesis,
superpathway of glyoxylate cycle and fatty acid degradation,
aerobic respiration (cytochrome c),
leucopelargonidin and leucocyanidin biosynthesis,
anthocyanin biosynthesis (pelargonidin 3-O-glucoside, cyanidin 3-O-glucoside),
scopoletin biosynthesis 		-0.68 0.32 -0.29 C0243
62 C0091 Fructose-1,6-bisphosphate D-Fructose-1,6-bisphosphate Fructose-1,6-bisphosphate gluconeogenesis I,
Calvin-Benson-Bassham cycle,
glycolysis IV (plant cytosol),
glycolysis I,
CA1P biosynthesis,
sucrose biosynthesis I 		-0.64 0.44 -0.42 C0091
63 C0262 UDP-glucuronic acid - UDP-D-glucuronate xylan biosynthesis,
UDP-D-glucuronate biosynthesis (from myo-inositol),
UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate),
UDP-D-apiose biosynthesis (from UDP-D-glucuronate),
galactose degradation III,
UDP-D-xylose and UDP-D-glucuronate biosynthesis 		-0.63 0.45 -0.43 C0262
64 C0088 FAD - FAD cytokinins degradation,
lysine degradation II,
valine degradation I,
isoleucine degradation I,
flavin biosynthesis I (bacteria and plants) 		-0.61 0.45 -0.41 C0088
65 C0095 Galacturonic acid D-Galacturonic acid D-Galacturonate UDP-D-galacturonate biosynthesis II (from D-galacturonate) -0.56 0.3 -0.3 C0095