AT3G52380 : chloroplast RNA-binding protein 33
Query Information
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AGICode AT3G52380
Description chloroplast RNA-binding protein 33
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G52380 chloroplast RNA-binding protein 33 chloroplast RNA-binding protein
33, PIGMENT DEFECTIVE 322		 1 0.32 -0.3
2 AT4G19100 Protein of unknown function (DUF3464) photosynthesis affected mutant 68 0.95 0.3 -0.33
3 AT3G26710 cofactor assembly of complex C cofactor assembly of complex C 0.94 0.31 -0.32
4 AT5G51110 Transcriptional coactivator/pterin dehydratase 0.93 0.32 -0.32
5 AT3G09210 plastid transcriptionally active 13 plastid transcriptionally active
13		 0.93 0.32 -0.33
6 AT2G33180 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast stroma; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 57 Blast hits to 57
proteins in 22 species: Archae - 0; Bacteria - 8; Metazoa -
0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes -
14 (source: NCBI BLink).		 0.92 0.31 -0.31
7 AT1G02150 Tetratricopeptide repeat (TPR)-like superfamily protein 0.92 0.3 -0.32
8 AT5G46580 pentatricopeptide (PPR) repeat-containing protein 0.92 0.29 -0.31
9 AT4G18480 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 CHLORINA 42, CHLORINA 42, CHL11,
CHLI-1, CHLI1		 0.91 0.33 -0.31
10 AT3G55250 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, chloroplast, nucleus; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 46
Blast hits to 46 proteins in 17 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 PIGMENT DEFECTIVE 329 0.91 0.31 -0.34
11 AT1G01970 Tetratricopeptide repeat (TPR)-like superfamily protein 0.91 0.31 -0.34
12 AT1G68590 Ribosomal protein PSRP-3/Ycf65 0.91 0.32 -0.3
13 AT4G29060 elongation factor Ts family protein embryo defective 2726 0.9 0.29 -0.33
14 AT4G21280 photosystem II subunit QA PHOTOSYSTEM II SUBUNIT Q,
PHOTOSYSTEM II SUBUNIT Q-1,
photosystem II subunit QA		 0.9 0.3 -0.31
15 AT5G45680 FK506-binding protein 13 FK506 BINDING PROTEIN 13,
FK506-binding protein 13		 0.9 0.33 -0.33
16 AT4G20360 RAB GTPase homolog E1B ATRAB8D, RAB GTPase homolog E1B,
RAB GTPase homolog E1B		 0.9 0.31 -0.33
17 AT1G02280 translocon at the outer envelope membrane of chloroplasts
33		 ATTOC33, PLASTID PROTEIN IMPORT 1,
translocon at the outer envelope
membrane of chloroplasts 33		 0.9 0.31 -0.29
18 AT1G53520 Chalcone-flavanone isomerase family protein 0.9 0.32 -0.3
19 AT2G17972 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast; EXPRESSED IN:
22 plant structures; EXPRESSED DURING: 14 growth stages;
Has 34 Blast hits to 34 proteins in 17 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.9 0.31 -0.32
20 AT5G14100 non-intrinsic ABC protein 14 ATP-binding cassette I11,
ARABIDOPSIS THALIANANON-INTRINSIC
ABC PROTEIN 14, non-intrinsic ABC
protein 14		 0.89 0.31 -0.3
21 AT3G56910 plastid-specific 50S ribosomal protein 5 plastid-specific 50S ribosomal
protein 5		 0.89 0.32 -0.32
22 AT2G28605 Photosystem II reaction center PsbP family protein 0.89 0.33 -0.33
23 AT3G56010 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 25
Blast hits to 25 proteins in 12 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.89 0.31 -0.31
24 AT1G14345 NAD(P)-linked oxidoreductase superfamily protein 0.89 0.34 -0.33
25 AT4G17600 Chlorophyll A-B binding family protein LIL3:1 0.88 0.31 -0.31
26 AT2G44640 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: mitochondrion,
chloroplast, plasma membrane, plastid, chloroplast
envelope; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3769 (InterPro:IPR022244);
BEST Arabidopsis thaliana protein match is: pigment
defective 320 (TAIR:AT3G06960.1); Has 49 Blast hits to 48
proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes -
1 (source: NCBI BLink).		 0.88 0.3 -0.31
27 AT5G11450 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP
family protein		 PsbP domain protein 5 0.88 0.32 -0.32
28 AT3G23700 Nucleic acid-binding proteins superfamily 0.88 0.32 -0.32
29 AT2G33430 differentiation and greening-like 1 DIFFERENTIATION AND GREENING-LIKE,
differentiation and greening-like
1		 0.88 0.34 -0.33
30 AT4G14890 2Fe-2S ferredoxin-like superfamily protein ferredoxin C 2 0.88 0.32 -0.3
31 AT1G70730 Phosphoglucomutase/phosphomannomutase family protein phosphoglucomutase 2 0.88 0.32 -0.34
32 AT4G38160 Mitochondrial transcription termination factor family
protein		 pigment defective 191 0.88 0.31 -0.32
33 AT3G20230 Ribosomal L18p/L5e family protein 0.88 0.33 -0.32
34 AT2G06520 photosystem II subunit X photosystem II subunit X 0.88 0.31 -0.31
35 AT2G21860 violaxanthin de-epoxidase-related 0.88 0.32 -0.29
36 AT5G52970 thylakoid lumen 15.0 kDa protein 0.88 0.32 -0.31
37 AT2G40760 Rhodanese/Cell cycle control phosphatase superfamily
protein		 0.87 0.31 -0.31
38 AT1G56050 GTP-binding protein-related 0.87 0.32 -0.33
39 AT4G25050 acyl carrier protein 4 acyl carrier protein 4 0.87 0.32 -0.33
40 AT3G59040 Tetratricopeptide repeat (TPR)-like superfamily protein 0.87 0.33 -0.33
41 AT5G08050 Protein of unknown function (DUF1118) 0.87 0.29 -0.32
42 AT5G62840 Phosphoglycerate mutase family protein 0.87 0.3 -0.32
43 AT5G07900 Mitochondrial transcription termination factor family
protein		 0.87 0.3 -0.28
44 AT5G22340 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 58 Blast hits to 58 proteins
in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 57; Viruses - 0; Other Eukaryotes - 1
(source: NCBI BLink).		 0.87 0.31 -0.33
45 AT5G63050 embryo defective 2759 embryo defective 2759 0.87 0.29 -0.29
46 AT5G11270 overexpressor of cationic peroxidase 3 overexpressor of cationic
peroxidase 3		 0.87 0.29 -0.33
47 AT1G51100 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 26
Blast hits to 26 proteins in 9 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.87 0.3 -0.33
48 AT3G06980 DEA(D/H)-box RNA helicase family protein 0.87 0.32 -0.32
49 AT2G47910 chlororespiratory reduction 6 chlororespiratory reduction 6 0.86 0.31 -0.31
50 AT2G38170 cation exchanger 1 ATCAX1, cation exchanger 1, RARE
COLD INDUCIBLE 4		 0.86 0.33 -0.33
51 AT1G54500 Rubredoxin-like superfamily protein 0.86 0.3 -0.3
52 AT3G46740 translocon at the outer envelope membrane of chloroplasts
75-III		 MODIFIER OF ARG1 1, translocon at
the outer envelope membrane of
chloroplasts 75-III		 0.86 0.32 -0.34
53 AT1G31330 photosystem I subunit F photosystem I subunit F 0.86 0.32 -0.32
54 AT3G17170 Translation elongation factor EF1B/ribosomal protein S6
family protein		 REGULATOR OF FATTY-ACID
COMPOSITION 3		 0.86 0.3 -0.32
55 AT1G62750 Translation elongation factor EFG/EF2 protein SNOWY COTYLEDON 1, ATSCO1/CPEF-G,
SNOWY COTYLEDON 1		 0.86 0.32 -0.29
56 AT4G24670 tryptophan aminotransferase related 2 tryptophan aminotransferase
related 2		 0.86 0.32 -0.3
57 AT5G63100 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.86 0.32 -0.32
58 AT3G04760 Pentatricopeptide repeat (PPR-like) superfamily protein 0.86 0.32 -0.32
59 AT3G04650 FAD/NAD(P)-binding oxidoreductase family protein 0.86 0.32 -0.34
60 AT1G34310 auxin response factor 12 auxin response factor 12 0.85 0.32 -0.3
61 AT3G02450 cell division protein ftsH, putative 0.85 0.31 -0.31
62 AT1G26570 UDP-glucose dehydrogenase 1 UDP-GLUCOSE DEHYDROGENASE 1,
UDP-glucose dehydrogenase 1		 0.85 0.33 -0.32
63 AT2G04530 Metallo-hydrolase/oxidoreductase superfamily protein CPZ, TRNASE Z 2 0.85 0.32 -0.32
64 AT3G05410 Photosystem II reaction center PsbP family protein 0.85 0.33 -0.3
65 AT3G21300 RNA methyltransferase family protein 0.85 0.31 -0.32
66 AT2G26500 cytochrome b6f complex subunit (petM), putative 0.85 0.34 -0.31
67 AT1G66820 glycine-rich protein 0.85 0.32 -0.31
68 AT1G21600 plastid transcriptionally active 6 plastid transcriptionally active 6 0.85 0.29 -0.29
69 AT5G54600 Translation protein SH3-like family protein 0.85 0.33 -0.3
70 AT2G42890 MEI2-like 2 MEI2-like 2, MEI2-like 2 -0.82 0.31 -0.32
71 AT5G64250 Aldolase-type TIM barrel family protein -0.81 0.33 -0.33
72 AT3G62770 Transducin/WD40 repeat-like superfamily protein autophagy 18a, autophagy 18a -0.81 0.33 -0.35
73 AT2G47800 multidrug resistance-associated protein 4 ATP-binding cassette C4, multidrug
resistance-associated protein 4,
EST3, multidrug
resistance-associated protein 4		 -0.81 0.3 -0.31
74 AT2G02370 SNARE associated Golgi protein family -0.81 0.31 -0.31
75 AT2G29990 alternative NAD(P)H dehydrogenase 2 alternative NAD(P)H dehydrogenase
2		 -0.8 0.3 -0.32
76 AT3G13310 Chaperone DnaJ-domain superfamily protein -0.8 0.31 -0.32
77 AT2G39050 hydroxyproline-rich glycoprotein family protein ArathEULS3, Euonymus lectin S3 -0.79 0.32 -0.31
78 AT4G37370 cytochrome P450, family 81, subfamily D, polypeptide 8 cytochrome P450, family 81,
subfamily D, polypeptide 8		 -0.79 0.34 -0.31
79 AT3G15180 ARM repeat superfamily protein -0.79 0.32 -0.31
80 AT5G02230 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 -0.79 0.33 -0.31
81 AT1G33110 MATE efflux family protein -0.78 0.32 -0.31
82 AT1G21450 SCARECROW-like 1 SCARECROW-like 1 -0.77 0.31 -0.3
83 AT3G46000 actin depolymerizing factor 2 actin depolymerizing factor 2 -0.77 0.31 -0.31
84 AT1G66760 MATE efflux family protein -0.77 0.3 -0.33
85 AT4G36830 GNS1/SUR4 membrane protein family HOS3-1 -0.77 0.33 -0.3
86 AT2G31260 autophagy 9 (APG9) autophagy 9, ATAPG9 -0.77 0.29 -0.32
87 AT1G70530 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 cysteine-rich RLK (RECEPTOR-like
protein kinase) 3		 -0.77 0.31 -0.34
88 AT1G50570 Calcium-dependent lipid-binding (CaLB domain) family
protein		 -0.76 0.3 -0.33
89 AT4G31550 WRKY DNA-binding protein 11 ATWRKY11, WRKY DNA-binding protein
11		 -0.76 0.3 -0.31
90 AT2G40270 Protein kinase family protein -0.76 0.32 -0.33
91 AT5G63790 NAC domain containing protein 102 NAC domain containing protein 102,
NAC domain containing protein 102		 -0.75 0.31 -0.32
92 AT2G26300 G protein alpha subunit 1 ARABIDOPSIS THALIANA G PROTEIN
ALPHA SUBUNIT 1, G protein alpha
subunit 1, G PROTEIN ALPHA SUBUNIT
1		 -0.75 0.34 -0.3
93 AT1G01720 NAC (No Apical Meristem) domain transcriptional regulator
superfamily protein		 Arabidopsis NAC domain containing
protein 2, ATAF1		 -0.75 0.31 -0.29
94 AT3G63500 Protein of unknown function (DUF1423) -0.75 0.3 -0.32
95 AT3G05290 peroxisomal adenine nucleotide carrier 1 AtPNC1, peroxisomal adenine
nucleotide carrier 1		 -0.75 0.32 -0.3
96 AT3G51130 unknown protein; CONTAINS InterPro DOMAIN/s:
Uncharacterised protein family UPF0183
(InterPro:IPR005373); Has 269 Blast hits to 265 proteins in
123 species: Archae - 0; Bacteria - 0; Metazoa - 131; Fungi
- 82; Plants - 37; Viruses - 0; Other Eukaryotes - 19
(source: NCBI BLink).		 -0.75 0.36 -0.31
97 AT5G66650 Protein of unknown function (DUF607) -0.74 0.31 -0.32
98 AT2G46150 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 -0.74 0.31 -0.3
99 AT4G37290 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: response to karrikin; LOCATED IN: endomembrane
system; EXPRESSED IN: cotyledon, hypocotyl, leaf; EXPRESSED
DURING: LP.04 four leaves visible; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G23270.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 -0.74 0.31 -0.31
100 AT3G25010 receptor like protein 41 receptor like protein 41, receptor
like protein 41		 -0.74 0.31 -0.31
101 AT5G23580 calmodulin-like domain protein kinase 9 ARABIDOPSIS THALIANA
CALMODULIN-LIKE DOMAIN PROTEIN
KINASE 9, ATCPK12, calmodulin-like
domain protein kinase 9,
CALCIUM-DEPENDENT PROTEIN KINASE
12		 -0.73 0.32 -0.28
102 AT2G17990 BEST Arabidopsis thaliana protein match is:
kinectin-related (TAIR:AT5G66250.3); Has 7578 Blast hits to
6129 proteins in 783 species: Archae - 220; Bacteria -
1045; Metazoa - 3605; Fungi - 575; Plants - 442; Viruses -
38; Other Eukaryotes - 1653 (source: NCBI BLink).		 -0.73 0.31 -0.34
103 AT1G68910 WPP domain-interacting protein 2 WPP domain-interacting protein 2 -0.73 0.31 -0.32
104 AT3G26460 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 -0.73 0.31 -0.33
105 AT2G43290 Calcium-binding EF-hand family protein multicopy suppressors of snf4
deficiency in yeast 3		 -0.72 0.31 -0.31
106 AT5G40690 CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site
(InterPro:IPR018247); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G41730.1); Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 -0.71 0.32 -0.3
107 AT2G22300 signal responsive 1 CALMODULIN-BINDING TRANSCRIPTION
ACTIVATOR 3, signal responsive 1		 -0.71 0.32 -0.33
108 AT4G16110 response regulator 2 response regulator 2, response
regulator 2		 -0.71 0.29 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
109 C0051 Aconitic acid cis-Aconitic acid cis-Aconitate glutamine biosynthesis III,
TCA cycle variation V (plant),
glyoxylate cycle,
TCA cycle variation III (eukaryotic) 		-0.81 0.45 -0.47 C0051