AT3G52260 : -
Query Information
Cytoscape Web will replace the contents of this div with your graph.
AGICode AT3G52260
Description Pseudouridine synthase family protein
Gene information
Help   
  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G52260 Pseudouridine synthase family protein 1 0.31 -0.31
2 AT2G21380 Kinesin motor family protein -0.65 0.33 -0.32
3 AT1G60995 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: cellular_component
unknown; EXPRESSED IN: 20 plant structures; EXPRESSED
DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s:
Membralin (InterPro:IPR019144); Has 172 Blast hits to 170
proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa -
110; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes
- 24 (source: NCBI BLink).		 -0.61 0.32 -0.3
4 AT2G04070 MATE efflux family protein -0.6 0.3 -0.29
5 AT3G22640 cupin family protein PAP85 0.59 0.31 -0.33
6 AT1G55680 Transducin/WD40 repeat-like superfamily protein -0.58 0.34 -0.33
7 AT1G64330 myosin heavy chain-related -0.58 0.32 -0.3
8 AT2G23960 Class I glutamine amidotransferase-like superfamily protein 0.57 0.33 -0.31
9 AT3G13225 WW domain-containing protein -0.57 0.32 -0.31
10 AT5G47360 Tetratricopeptide repeat (TPR)-like superfamily protein -0.57 0.31 -0.31
11 AT5G11040 TRS120 AtTRS120, TRS120 -0.57 0.3 -0.32
12 AT4G16840 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G35658.3); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.57 0.34 -0.3
13 AT1G28420 homeobox-1 homeobox-1 -0.56 0.34 -0.32
14 AT5G25950 Protein of Unknown Function (DUF239) -0.56 0.31 -0.31
15 AT5G67020 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G50340.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 -0.56 0.31 -0.31
16 AT4G19890 Pentatricopeptide repeat (PPR-like) superfamily protein -0.56 0.3 -0.31
17 AT2G33690 Late embryogenesis abundant protein, group 6 -0.56 0.34 -0.33
18 AT1G68880 basic leucine-zipper 8 basic leucine-zipper 8, basic
leucine-zipper 8		 0.56 0.33 -0.31
19 AT2G01170 bidirectional amino acid transporter 1 bidirectional amino acid
transporter 1		 -0.56 0.31 -0.32
20 AT1G21290 transposable element gene -0.56 0.32 -0.33
21 AT2G10500 transposable element gene 0.55 0.3 -0.32
22 AT2G05020 transposable element gene -0.55 0.34 -0.32
23 AT5G20390 Glycosyl hydrolase superfamily protein -0.55 0.34 -0.31
24 AT5G22400 Rho GTPase activating protein with PAK-box/P21-Rho-binding
domain		 0.54 0.31 -0.3
25 AT3G28780 Protein of unknown function (DUF1216) -0.54 0.3 -0.32
26 AT3G02390 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast.		 -0.53 0.3 -0.32
27 AT1G19200 Protein of unknown function (DUF581) 0.53 0.31 -0.32
28 AT1G32770 NAC domain containing protein 12 NAC domain containing protein 12,
NAC domain containing protein 12,
NAC SECONDARY WALL THICKENING
PROMOTING 3, SECONDARY
WALL-ASSOCIATED NAC DOMAIN 1		 -0.53 0.32 -0.32
29 AT5G32590 myosin heavy chain-related 0.53 0.32 -0.31
30 AT2G31870 Poly (ADP-ribose) glycohydrolase (PARG) poly(ADP-ribose) glycohydrolase 1,
Sanskrit for 'bright'		 -0.53 0.32 -0.32
31 AT4G18230 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Oligosaccharide biosynthesis protein Alg14 like
(InterPro:IPR013969); Has 640 Blast hits to 640 proteins in
277 species: Archae - 4; Bacteria - 281; Metazoa - 94;
Fungi - 127; Plants - 57; Viruses - 0; Other Eukaryotes -
77 (source: NCBI BLink).		 0.53 0.33 -0.34
32 AT4G02490 transposable element gene 0.52 0.31 -0.3
33 AT3G47610 transcription regulators;zinc ion binding 0.52 0.31 -0.32
34 AT3G32190 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: mitochondrion; BEST
Arabidopsis thaliana protein match is: myosin heavy
chain-related (TAIR:AT5G32590.1); Has 4211 Blast hits to
3490 proteins in 479 species: Archae - 79; Bacteria - 478;
Metazoa - 1994; Fungi - 436; Plants - 174; Viruses - 22;
Other Eukaryotes - 1028 (source: NCBI BLink).		 -0.51 0.31 -0.34
35 AT5G36270 pseudogene of dehydroascorbate reductase 0.51 0.31 -0.34
36 AT4G23280 cysteine-rich RLK (RECEPTOR-like protein kinase) 20 cysteine-rich RLK (RECEPTOR-like
protein kinase) 20		 -0.51 0.3 -0.3
37 AT3G44900 cation/H+ exchanger 4 cation/H+ exchanger 4, cation/H+
exchanger 4		 -0.51 0.31 -0.31
38 AT1G08270 CONTAINS InterPro DOMAIN/s: MIT (InterPro:IPR007330); BEST
Arabidopsis thaliana protein match is: AAA-type ATPase
family protein (TAIR:AT2G27600.1); Has 1133 Blast hits to
1133 proteins in 252 species: Archae - 47; Bacteria - 0;
Metazoa - 540; Fungi - 145; Plants - 223; Viruses - 0;
Other Eukaryotes - 178 (source: NCBI BLink).		 0.5 0.32 -0.32
39 AT1G14640 SWAP (Suppressor-of-White-APricot)/surp domain-containing
protein		 -0.5 0.3 -0.34
40 AT2G02550 PIN domain-like family protein -0.5 0.31 -0.3
41 ATMG00140 hypothetical protein ORF167 0.5 0.31 -0.3
42 AT4G20160 LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures;
EXPRESSED DURING: L mature pollen stage, M germinated
pollen stage, 4 anthesis, petal differentiation and
expansion stage; BEST Arabidopsis thaliana protein match
is: RING/U-box superfamily protein (TAIR:AT1G30860.1); Has
64917 Blast hits to 39974 proteins in 1949 species: Archae
- 279; Bacteria - 7425; Metazoa - 26604; Fungi - 5788;
Plants - 3193; Viruses - 275; Other Eukaryotes - 21353
(source: NCBI BLink).		 0.5 0.29 -0.3
43 AT1G32760 Glutaredoxin family protein 0.5 0.32 -0.33
44 AT2G40580 Protein kinase superfamily protein -0.49 0.31 -0.29
45 AT1G29490 SAUR-like auxin-responsive protein family 0.49 0.31 -0.33
46 AT2G22350 transposable element gene -0.49 0.32 -0.32
47 AT1G63600 Receptor-like protein kinase-related family protein 0.49 0.32 -0.32
48 AT2G43900 Endonuclease/exonuclease/phosphatase family protein -0.49 0.31 -0.3
49 AT4G17790 SNARE associated Golgi protein family 0.49 0.29 -0.29
50 AT3G01700 arabinogalactan protein 11 arabinogalactan protein 11,
ARABINOGALACTAN PROTEIN 11		 -0.49 0.31 -0.31
51 AT5G02990 Galactose oxidase/kelch repeat superfamily protein -0.49 0.32 -0.32
52 AT5G65160 tetratricopeptide repeat (TPR)-containing protein tetratricopeptide repeat 14 0.48 0.33 -0.29
53 AT4G28460 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 10 plant structures;
EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis,
petal differentiation and expansion stage; Has 8 Blast hits
to 8 proteins in 3 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.48 0.3 -0.32
54 AT5G12430 Heat shock protein DnaJ with tetratricopeptide repeat tetratricopeptide repeat 16 -0.48 0.32 -0.33
55 AT5G61800 Pentatricopeptide repeat (PPR) superfamily protein -0.48 0.31 -0.32
56 AT1G27080 nitrate transporter 1.6 nitrate transporter 1.6 -0.47 0.32 -0.33
57 AT3G42580 transposable element gene -0.47 0.31 -0.3
58 AT3G28830 Protein of unknown function (DUF1216) -0.47 0.31 -0.32
59 AT1G47465 transposable element gene -0.47 0.32 -0.31
60 AT2G13680 callose synthase 5 ARABIDOPSIS THALIANA GLUCAN
SYNTHASE-LIKE 2, callose synthase
5, GLUCAN SYNTHASE-LIKE 2		 0.47 0.31 -0.3
61 AT1G55570 SKU5 similar 12 SKU5 similar 12 0.47 0.32 -0.32
62 AT1G41770 transposable element gene -0.47 0.31 -0.31
63 AT5G65490 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: SGT1
(InterPro:IPR010770); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
339 (source: NCBI BLink).		 0.47 0.33 -0.32
64 AT5G14870 cyclic nucleotide-gated channel 18 CYCLIC NUCLEOTIDE-GATED CHANNEL
18, cyclic nucleotide-gated
channel 18		 -0.46 0.31 -0.31
65 AT5G19020 mitochondrial editing factor 18 mitochondrial editing factor 18 -0.46 0.3 -0.31
66 AT2G13970 transposable element gene -0.46 0.31 -0.31
67 AT2G04840 Protein of unknown function (DUF295) -0.46 0.31 -0.32
68 AT1G04540 Calcium-dependent lipid-binding (CaLB domain) family
protein		 -0.46 0.33 -0.31
69 AT4G21420 transposable element gene -0.45 0.32 -0.33
70 AT2G10450 14-3-3 family protein 0.45 0.32 -0.32
71 AT4G02780 Terpenoid cyclases/Protein prenyltransferases superfamily
protein		 ABC33, ARABIDOPSIS THALIANA
ENT-COPALYL DIPHOSPHATE SYNTHETASE
1, CPP synthase, ENT-COPALYL
DIPHOSPHATE SYNTHETASE 1, GA
REQUIRING 1		 0.45 0.31 -0.31
72 AT2G01510 Tetratricopeptide repeat (TPR)-like superfamily protein -0.45 0.3 -0.31
73 AT5G26130 CAP (Cysteine-rich secretory proteins, Antigen 5, and
Pathogenesis-related 1 protein) superfamily protein		 -0.45 0.31 -0.31
74 AT5G52630 mitochondrial RNAediting factor 1 mitochondrial RNAediting factor 1 -0.45 0.32 -0.32
75 AT2G34320 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 0.44 0.31 -0.3
Metabolite information
Help   
  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
76 C0103 Glutaric acid - - - 0.68 0.45 -0.48
77 C0100 Glucose-6-phosphate D-(+)-Glucose-6-phosphate D-Glucose-6-phosphate starch biosyntehsis -0.48 0.29 -0.34 C0100