AT3G20930 : -
Query Information
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AGICode AT3G20930
Description RNA-binding (RRM/RBD/RNP motifs) family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G20930 RNA-binding (RRM/RBD/RNP motifs) family protein 1 0.32 -0.3
2 AT3G01370 CRM family member 2 Arabidopsis thaliana CRM family
member 2, CRM family member 2		 0.87 0.32 -0.34
3 AT5G14460 Pseudouridine synthase family protein 0.86 0.31 -0.33
4 AT1G32160 Protein of unknown function (DUF760) 0.83 0.31 -0.3
5 AT1G15180 MATE efflux family protein 0.83 0.31 -0.32
6 AT4G10470 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G33050.2); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.81 0.33 -0.34
7 ATCG00570 photosystem II reaction center protein F photosystem II reaction center
protein F		 0.81 0.3 -0.3
8 AT5G04900 NYC1-like NYC1-like 0.8 0.32 -0.31
9 AT3G05350 Metallopeptidase M24 family protein 0.8 0.32 -0.31
10 ATCG00580 photosystem II reaction center protein E photosystem II reaction center
protein E		 0.79 0.34 -0.33
11 AT4G15560 Deoxyxylulose-5-phosphate synthase AtCLA1, CLA, CLOROPLASTOS
ALTERADOS 1, DEF,
1-DEOXY-D-XYLULOSE 5-PHOSPHATE
SYNTHASE 2, 1-DEOXY-D-XYLULOSE
5-PHOSPHATE SYNTHASE		 0.78 0.33 -0.3
12 AT1G31800 cytochrome P450, family 97, subfamily A, polypeptide 3 cytochrome P450, family 97,
subfamily A, polypeptide 3, LUTEIN
DEFICIENT 5		 0.78 0.32 -0.32
13 AT1G51110 Plastid-lipid associated protein PAP / fibrillin family
protein		 0.78 0.31 -0.3
14 AT3G11560 LETM1-like protein 0.77 0.32 -0.31
15 AT1G75240 homeobox protein 33 homeobox protein 33, homeobox
protein 33, zinc-finger
homeodomain 5		 0.77 0.31 -0.31
16 AT1G67830 alpha-fucosidase 1 Arabidopsis thaliana
alpha-fucosidase 1,
alpha-fucosidase 1		 0.77 0.31 -0.3
17 AT3G57470 Insulinase (Peptidase family M16) family protein 0.77 0.33 -0.32
18 AT2G30150 UDP-Glycosyltransferase superfamily protein 0.77 0.32 -0.32
19 AT1G29700 Metallo-hydrolase/oxidoreductase superfamily protein 0.76 0.32 -0.33
20 AT5G24000 Protein of unknown function (DUF819) 0.76 0.3 -0.31
21 AT5G35170 adenylate kinase family protein 0.76 0.33 -0.31
22 AT4G33500 Protein phosphatase 2C family protein 0.76 0.35 -0.33
23 AT1G25290 RHOMBOID-like protein 10 RHOMBOID-like protein 10,
RHOMBOID-like protein 10		 0.75 0.32 -0.31
24 AT1G08830 copper/zinc superoxide dismutase 1 copper/zinc superoxide dismutase 1 -0.75 0.29 -0.34
25 AT3G61080 Protein kinase superfamily protein 0.75 0.31 -0.34
26 AT1G01790 K+ efflux antiporter 1 K+ EFFLUX ANTIPORTER 1, K+ efflux
antiporter 1		 0.74 0.31 -0.29
27 AT5G46880 homeobox-7 homeobox-7, HOMEODOMAIN GLABROUS 5 0.74 0.33 -0.33
28 AT1G12330 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 12 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G12900.1); Has 249 Blast hits to 249 proteins in
27 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi -
14; Plants - 217; Viruses - 0; Other Eukaryotes - 11
(source: NCBI BLink).		 0.74 0.31 -0.3
29 AT3G15520 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family
protein		 0.74 0.31 -0.3
30 AT4G23940 FtsH extracellular protease family 0.73 0.32 -0.33
31 AT1G28100 unknown protein; Has 64 Blast hits to 64 proteins in 27
species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 6;
Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 0.73 0.32 -0.33
32 AT5G12130 integral membrane TerC family protein TELLURITE RESISTANCE C, PIGMENT
DEFECTIVE 149		 0.73 0.32 -0.3
33 AT3G27925 DegP protease 1 DegP protease 1, DegP protease 1 0.73 0.3 -0.33
34 AT1G53210 sodium/calcium exchanger family protein / calcium-binding
EF hand family protein		 0.73 0.32 -0.3
35 ATCG00480 ATP synthase subunit beta ATP synthase subunit beta, ATP
synthase subunit beta		 0.72 0.32 -0.34
36 ATCG00550 photosystem II reaction center protein J photosystem II reaction center
protein J		 0.72 0.32 -0.32
37 ATCG00560 photosystem II reaction center protein L photosystem II reaction center
protein L		 0.71 0.3 -0.33
38 AT2G31400 genomes uncoupled 1 genomes uncoupled 1 0.71 0.32 -0.32
39 AT4G15750 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 0.71 0.32 -0.3
40 AT2G45810 DEA(D/H)-box RNA helicase family protein 0.71 0.3 -0.31
41 AT5G16180 ortholog of maize chloroplast splicing factor CRS1 ARABIDOPSIS ORTHOLOG OF MAIZE
CHLOROPLAST SPLICING FACTOR CRS1,
ortholog of maize chloroplast
splicing factor CRS1		 0.7 0.32 -0.3
42 AT2G38780 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED
DURING: 13 growth stages; Has 58 Blast hits to 58 proteins
in 23 species: Archae - 0; Bacteria - 4; Metazoa - 1; Fungi
- 0; Plants - 44; Viruses - 0; Other Eukaryotes - 9
(source: NCBI BLink).		 0.7 0.33 -0.32
43 AT1G05200 glutamate receptor 3.4 glutamate receptor 3.4, glutamate
receptor 3.4, GLUR3		 0.7 0.32 -0.3
44 AT4G12550 Auxin-Induced in Root cultures 1 Auxin-Induced in Root cultures 1 -0.7 0.32 -0.3
45 AT1G29280 WRKY DNA-binding protein 65 WRKY DNA-BINDING PROTEIN 65, WRKY
DNA-binding protein 65		 -0.7 0.31 -0.3
46 AT3G01680 CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28
(InterPro:IPR021640); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast
hits to 112 proteins in 13 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 sieve element occlusion b,
Sieve-Element-Occlusion-Related 1		 0.7 0.32 -0.33
47 AT2G47130 NAD(P)-binding Rossmann-fold superfamily protein AtSDR3, short-chain
dehydrogenase/reductase 2		 -0.7 0.31 -0.32
48 AT2G30170 Protein phosphatase 2C family protein 0.7 0.34 -0.3
49 AT1G01320 Tetratricopeptide repeat (TPR)-like superfamily protein 0.7 0.29 -0.32
50 AT5G40970 Protein of unknown function (DUF 3339) 0.69 0.29 -0.32
51 AT1G01320 Tetratricopeptide repeat (TPR)-like superfamily protein 0.69 0.31 -0.32
52 AT4G20030 RNA-binding (RRM/RBD/RNP motifs) family protein 0.69 0.32 -0.3
53 AT1G49390 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.69 0.32 -0.31
54 AT3G46440 UDP-XYL synthase 5 UDP-XYL synthase 5 -0.69 0.32 -0.31
55 AT1G72190 D-isomer specific 2-hydroxyacid dehydrogenase family
protein		 0.69 0.32 -0.31
56 AT5G53290 cytokinin response factor 3 cytokinin response factor 3 -0.69 0.35 -0.32
57 AT4G18600 SCAR family protein WASP (WISKOTT-ALDRICH SYNDROME
PROTEIN)-FAMILY VERPROLIN
HOMOLOGOUS PROTEIN 5, SCARL, WAVE5		 0.69 0.32 -0.32
58 AT2G28305 Putative lysine decarboxylase family protein ATLOG1, LONELY GUY 1 0.69 0.31 -0.33
59 AT5G14690 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G01516.1); Has 86 Blast hits
to 86 proteins in 16 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 2; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.68 0.31 -0.32
60 AT1G52510 alpha/beta-Hydrolases superfamily protein 0.68 0.32 -0.31
61 AT3G06220 AP2/B3-like transcriptional factor family protein 0.68 0.32 -0.29
62 ATCG00760 ribosomal protein L36 ribosomal protein L36 0.68 0.32 -0.3
63 AT1G68540 NAD(P)-binding Rossmann-fold superfamily protein cinnamoyl coA reductase-like 6,
tetraketide alpha-pyrone reductase
2		 0.68 0.3 -0.32
64 AT5G11380 1-deoxy-D-xylulose 5-phosphate synthase 3 1-deoxy-D-xylulose 5-phosphate
synthase 3		 0.68 0.32 -0.31
65 AT1G28390 Protein kinase superfamily protein -0.68 0.32 -0.3
66 AT3G17420 glyoxysomal protein kinase 1 glyoxysomal protein kinase 1 -0.67 0.32 -0.32
67 AT2G35270 Predicted AT-hook DNA-binding family protein GIANT KILLER -0.67 0.32 -0.3
68 AT3G26440 Protein of unknown function (DUF707) -0.67 0.3 -0.35
69 AT5G66690 UDP-Glycosyltransferase superfamily protein UGT72E2 -0.67 0.33 -0.3
70 AT1G08320 bZIP transcription factor family protein bZIP21, TGACG (TGA) motif-binding
protein 9		 -0.67 0.3 -0.29
71 AT1G14080 fucosyltransferase 6 ATFUT6, fucosyltransferase 6 -0.66 0.29 -0.32
72 AT4G39390 nucleotide sugar transporter-KT 1 A. THALIANA NUCLEOTIDE SUGAR
TRANSPORTER-KT 1, nucleotide sugar
transporter-KT 1		 -0.66 0.3 -0.31
73 AT2G42570 TRICHOME BIREFRINGENCE-LIKE 39 TRICHOME BIREFRINGENCE-LIKE 39 -0.66 0.32 -0.31
74 AT5G54140 IAA-leucine-resistant (ILR1)-like 3 IAA-leucine-resistant (ILR1)-like
3		 -0.66 0.32 -0.32
75 AT2G43880 Pectin lyase-like superfamily protein -0.65 0.3 -0.31
76 AT2G36320 A20/AN1-like zinc finger family protein -0.64 0.31 -0.33
77 AT1G07615 GTP-binding protein Obg/CgtA -0.64 0.32 -0.31
78 AT5G22790 reticulata-related 1 reticulata-related 1 -0.64 0.34 -0.31
79 AT1G62790 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.64 0.3 -0.33
80 AT5G39580 Peroxidase superfamily protein -0.63 0.33 -0.34
81 AT1G05720 selenoprotein family protein -0.63 0.32 -0.31
82 AT5G62290 nucleotide-sensitive chloride conductance regulator (ICln)
family protein		 -0.63 0.29 -0.33
83 AT2G46140 Late embryogenesis abundant protein -0.63 0.3 -0.34
84 AT1G49050 Eukaryotic aspartyl protease family protein -0.63 0.33 -0.31
85 AT5G53400 HSP20-like chaperones superfamily protein BOBBER1 -0.62 0.33 -0.32
86 AT5G12410 THUMP domain-containing protein -0.62 0.34 -0.32
87 AT5G61030 glycine-rich RNA-binding protein 3 glycine-rich RNA-binding protein 3 -0.62 0.31 -0.32
88 AT5G63660 Scorpion toxin-like knottin superfamily protein LOW-MOLECULAR-WEIGHT CYSTEINE-RICH
74, PDF2.5		 -0.62 0.31 -0.32
89 AT5G60950 COBRA-like protein 5 precursor COBRA-like protein 5 precursor -0.61 0.32 -0.29
90 AT5G27920 F-box family protein -0.61 0.29 -0.32
91 AT5G45510 Leucine-rich repeat (LRR) family protein -0.61 0.32 -0.31
92 AT2G34020 Calcium-binding EF-hand family protein -0.61 0.32 -0.32
93 AT5G20240 K-box region and MADS-box transcription factor family
protein 		PISTILLATA -0.6 0.32 -0.28
94 AT2G47460 myb domain protein 12 MYB DOMAIN PROTEIN 12, myb domain
protein 12, PRODUCTION OF FLAVONOL
GLYCOSIDES 1		 -0.6 0.34 -0.28
95 AT5G10130 Pollen Ole e 1 allergen and extensin family protein -0.6 0.33 -0.3
96 AT3G46690 UDP-Glycosyltransferase superfamily protein -0.6 0.29 -0.29
97 AT4G32890 GATA transcription factor 9 GATA transcription factor 9 -0.6 0.29 -0.29
98 AT5G40300 Uncharacterised protein family (UPF0497) -0.6 0.34 -0.33
99 AT1G12740 cytochrome P450, family 87, subfamily A, polypeptide 2 cytochrome P450, family 87,
subfamily A, polypeptide 2		 -0.6 0.32 -0.32
100 AT5G24270 Calcium-binding EF-hand family protein SALT OVERLY SENSITIVE 3,
CALCINEURIN B-LIKE PROTEIN 4, SALT
OVERLY SENSITIVE 3		 -0.59 0.33 -0.3
101 AT5G45280 Pectinacetylesterase family protein -0.59 0.33 -0.31
102 AT5G47750 D6 protein kinase like 2 D6 protein kinase like 2, PK5 -0.59 0.31 -0.31
103 AT3G15240 Serine/threonine-protein kinase WNK (With No
Lysine)-related		 -0.59 0.31 -0.31
104 AT5G60530 late embryogenesis abundant protein-related / LEA
protein-related		 -0.59 0.3 -0.3
105 AT1G67330 Protein of unknown function (DUF579) -0.59 0.32 -0.32
106 AT4G32870 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 -0.59 0.33 -0.32
107 AT3G06300 P4H isoform 2 P4H isoform 2, prolyl
4-hydroxylase 2		 -0.59 0.31 -0.32
108 AT4G22250 RING/U-box superfamily protein -0.58 0.31 -0.33
109 AT5G67430 Acyl-CoA N-acyltransferases (NAT) superfamily protein -0.58 0.31 -0.34
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
110 C0133 Kaempferol-3,7-O-α-dirhamnopyranoside Kaempferol-3,7-O-α-L-dirhamnopyranoside Kaempferol-3-rhamnoside-7-rhamnoside kaempferol glucoside biosynthesis (Arabidopsis) 0.86 0.42 -0.44 C0133