AT3G15190 : -
Query Information
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AGICode AT3G15190
Description chloroplast 30S ribosomal protein S20, putative
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G15190 chloroplast 30S ribosomal protein S20, putative 1 0.32 -0.32
2 AT5G14910 Heavy metal transport/detoxification superfamily protein 0.96 0.31 -0.32
3 AT2G33450 Ribosomal L28 family 0.96 0.31 -0.32
4 AT3G25920 ribosomal protein L15 ribosomal protein L15 0.96 0.33 -0.36
5 AT5G14320 Ribosomal protein S13/S18 family EMBRYO DEFECTIVE 3137 0.96 0.3 -0.33
6 AT1G64510 Translation elongation factor EF1B/ribosomal protein S6
family protein		 0.96 0.31 -0.34
7 AT3G54210 Ribosomal protein L17 family protein 0.95 0.31 -0.31
8 AT5G65220 Ribosomal L29 family protein 0.95 0.32 -0.31
9 AT5G13510 Ribosomal protein L10 family protein EMBRYO DEFECTIVE 3136 0.95 0.32 -0.32
10 AT1G78630 Ribosomal protein L13 family protein embryo defective 1473 0.95 0.32 -0.32
11 AT1G48350 Ribosomal L18p/L5e family protein EMBRYO DEFECTIVE 3105 0.95 0.31 -0.33
12 AT3G13120 Ribosomal protein S10p/S20e family protein 0.95 0.31 -0.3
13 AT3G44890 ribosomal protein L9 ribosomal protein L9 0.95 0.3 -0.32
14 AT1G32990 plastid ribosomal protein l11 plastid ribosomal protein l11 0.94 0.31 -0.31
15 AT1G07320 ribosomal protein L4 EMBRYO DEFECTIVE 2784, ribosomal
protein L4		 0.94 0.3 -0.32
16 AT2G38140 plastid-specific ribosomal protein 4 plastid-specific ribosomal protein
4		 0.94 0.31 -0.32
17 AT1G14270 CAAX amino terminal protease family protein 0.94 0.33 -0.31
18 AT1G29070 Ribosomal protein L34 0.94 0.3 -0.31
19 AT2G33800 Ribosomal protein S5 family protein EMBRYO DEFECTIVE 3113 0.94 0.3 -0.32
20 AT1G79850 ribosomal protein S17 CS17, PIGMENT DEFECTIVE 347,
PLASTID RIBOSOMAL SMALL SUBUNIT
PROTEIN 17, ribosomal protein S17		 0.94 0.3 -0.32
21 AT3G52150 RNA-binding (RRM/RBD/RNP motifs) family protein 0.94 0.32 -0.3
22 AT4G01310 Ribosomal L5P family protein 0.93 0.31 -0.33
23 AT2G48070 resistance to phytophthora 1 RESISTANCE TO PHYTOPHTHORA 1 0.93 0.31 -0.31
24 AT5G47190 Ribosomal protein L19 family protein 0.93 0.3 -0.32
25 AT3G56910 plastid-specific 50S ribosomal protein 5 plastid-specific 50S ribosomal
protein 5		 0.93 0.33 -0.29
26 AT4G17560 Ribosomal protein L19 family protein 0.93 0.31 -0.32
27 AT1G75350 Ribosomal protein L31 embryo defective 2184 0.93 0.29 -0.32
28 AT2G43030 Ribosomal protein L3 family protein 0.93 0.31 -0.31
29 AT5G54600 Translation protein SH3-like family protein 0.93 0.31 -0.33
30 AT2G18710 SECY homolog 1 SECY homolog 1 0.93 0.31 -0.3
31 AT5G58250 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
thylakoid, chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 14 growth stages; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF2488
(InterPro:IPR019616); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
339 (source: NCBI BLink).		 EMBRYO DEFECTIVE 3143 0.92 0.29 -0.32
32 AT2G35500 shikimate kinase like 2 shikimate kinase-like 2 0.92 0.31 -0.32
33 AT1G17650 glyoxylate reductase 2 glyoxylate reductase 2, GLYOXYLATE
REDUCTASE 2		 0.92 0.31 -0.33
34 AT5G30510 ribosomal protein S1 ARRPS1, ribosomal protein S1 0.92 0.32 -0.31
35 AT2G20890 photosystem II reaction center PSB29 protein photosystem II reaction center
PSB29 protein, THYLAKOID
FORMATION1		 0.92 0.31 -0.31
36 AT5G35630 glutamine synthetase 2 GLUTAMINE SYNTHETASE LIKE 1,
GLUTAMINE SYNTHETASE 2, glutamine
synthetase 2		 0.92 0.32 -0.34
37 AT4G11175 Nucleic acid-binding, OB-fold-like protein 0.92 0.31 -0.31
38 AT1G53520 Chalcone-flavanone isomerase family protein 0.92 0.34 -0.3
39 AT5G55220 trigger factor type chaperone family protein 0.92 0.32 -0.31
40 AT3G51140 Protein of unknown function (DUF3353) 0.92 0.33 -0.32
41 AT3G28460 methyltransferases 0.91 0.32 -0.32
42 AT3G12930 Lojap-related protein 0.91 0.3 -0.32
43 AT4G30950 fatty acid desaturase 6 fatty acid desaturase 6, FATTY
ACID DESATURASE C, STEAROYL
DESATURASE DEFICIENCY 4		 0.91 0.33 -0.31
44 AT5G11450 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP
family protein		 PsbP domain protein 5 0.91 0.32 -0.31
45 AT3G48730 glutamate-1-semialdehyde 2,1-aminomutase 2 glutamate-1-semialdehyde
2,1-aminomutase 2		 0.91 0.31 -0.32
46 AT2G40490 Uroporphyrinogen decarboxylase HEME2 0.91 0.31 -0.32
47 AT1G01080 RNA-binding (RRM/RBD/RNP motifs) family protein 0.91 0.34 -0.32
48 AT1G62780 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 14 growth stages; Has 94
Blast hits to 94 proteins in 35 species: Archae - 6;
Bacteria - 10; Metazoa - 21; Fungi - 2; Plants - 48;
Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).		 0.91 0.33 -0.32
49 AT1G08520 ALBINA 1 ALB-1V, ALBINA 1, CHLD, PIGMENT
DEFECTIVE EMBRYO 166, V157		 0.91 0.3 -0.33
50 AT5G14660 peptide deformylase 1B ATDEF2, DEF2, peptide deformylase
1B		 0.91 0.33 -0.32
51 AT5G57930 Arabidopsis thaliana protein of unknown function (DUF794) ACCUMULATION OF PHOTOSYSTEM ONE 2,
embryo defective 1629		 0.91 0.31 -0.34
52 AT4G34620 small subunit ribosomal protein 16 small subunit ribosomal protein 16 0.91 0.33 -0.31
53 AT5G08280 hydroxymethylbilane synthase hydroxymethylbilane synthase 0.91 0.32 -0.32
54 AT3G20230 Ribosomal L18p/L5e family protein 0.91 0.31 -0.32
55 AT1G05190 Ribosomal protein L6 family embryo defective 2394 0.91 0.31 -0.33
56 AT2G26930 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase 4-(cytidine
5'-phospho)-2-C-methyl-D-erithrito
l kinase, 4-(cytidine
5'-phospho)-2-C-methyl-D-erithrito
l kinase, 4-(cytidine
5′-diphospho)-2-C-methyl-d-e
rythritol kinase, 4-(cytidine
5′-diphospho)-2-C-methyl-d-e
rythritol kinase, ISPE, PIGMENT
DEFECTIVE 277		 0.91 0.31 -0.32
57 AT3G25480 Rhodanese/Cell cycle control phosphatase superfamily
protein		 0.91 0.34 -0.3
58 AT5G52970 thylakoid lumen 15.0 kDa protein 0.91 0.33 -0.31
59 AT1G14030 Rubisco methyltransferase family protein 0.91 0.33 -0.31
60 AT2G40690 NAD-dependent glycerol-3-phosphate dehydrogenase family
protein		 GLY1, SUPPRESSOR OF FATTY ACID
DESATURASE DEFICIENCY 1		 0.9 0.34 -0.31
61 AT3G60750 Transketolase 0.9 0.31 -0.31
62 AT5G11480 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.9 0.31 -0.3
63 AT5G06290 2-cysteine peroxiredoxin B 2-cysteine peroxiredoxin B, 2-CYS
PEROXIREDOXIN B		 0.9 0.31 -0.31
64 AT5G01590 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 60
Blast hits to 59 proteins in 31 species: Archae - 0;
Bacteria - 20; Metazoa - 1; Fungi - 2; Plants - 33; Viruses
- 0; Other Eukaryotes - 4 (source: NCBI BLink).		 0.9 0.29 -0.29
65 AT1G44575 Chlorophyll A-B binding family protein CP22, NONPHOTOCHEMICAL QUENCHING
4, PHOTOSYSTEM II SUBUNIT S		 0.9 0.3 -0.29
66 AT5G22340 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 58 Blast hits to 58 proteins
in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 57; Viruses - 0; Other Eukaryotes - 1
(source: NCBI BLink).		 0.9 0.3 -0.33
67 AT1G68590 Ribosomal protein PSRP-3/Ycf65 0.9 0.31 -0.3
68 AT4G01050 thylakoid rhodanese-like thylakoid rhodanese-like 0.9 0.3 -0.33
69 AT4G24770 31-kDa RNA binding protein ARABIDOPSIS THALIANA RNA BINDING
PROTEIN, APPROXIMATELY 31 KD,
ATRBP33, CP31, 31-kDa RNA binding
protein		 0.9 0.3 -0.3
70 AT5G42070 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast; EXPRESSED IN:
21 plant structures; EXPRESSED DURING: 13 growth stages;
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
(source: NCBI BLink).		 0.9 0.31 -0.33
71 AT3G63490 Ribosomal protein L1p/L10e family EMBRYO DEFECTIVE 3126 0.9 0.29 -0.31
72 AT5G46420 16S rRNA processing protein RimM family 0.9 0.32 -0.34
73 AT5G52960 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3143 (InterPro:IPR021489);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants -
385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI
BLink).		 0.89 0.32 -0.31
74 AT5G18660 NAD(P)-binding Rossmann-fold superfamily protein PALE-GREEN AND CHLOROPHYLL B
REDUCED 2		 0.89 0.31 -0.31
75 AT5G16390 chloroplastic acetylcoenzyme A carboxylase 1 BIOTIN CARBOXYL CARRIER PROTEIN,
BIOTIN CARBOXYL-CARRIER PROTEIN 1,
BIOTIN CARBOXYL-CARRIER PROTEIN 1,
chloroplastic acetylcoenzyme A
carboxylase 1, CAC1-A, CAC1A		 0.89 0.32 -0.32
76 AT3G55330 PsbP-like protein 1 PsbP-like protein 1 0.89 0.31 -0.31
77 AT1G08540 RNApolymerase sigma subunit 2 ABC1, SIGMA FACTOR 1, SIGMA FACTOR
2, RNA POLYMERASE SIGMA SUBUNIT 1,
RNApolymerase sigma subunit 2,
SIGA, SIGMA FACTOR B		 0.89 0.31 -0.33
78 AT1G59840 cofactor assembly of complex C cofactor assembly of complex C 0.89 0.32 -0.33
79 AT3G04260 plastid transcriptionally active 3 PIGMENT DEFECTIVE 324, plastid
transcriptionally active 3		 0.89 0.32 -0.3
80 AT1G75690 DnaJ/Hsp40 cysteine-rich domain superfamily protein LOW QUANTUM YIELD OF PHOTOSYSTEM
II 1		 0.89 0.33 -0.33
81 AT4G20360 RAB GTPase homolog E1B ATRAB8D, RAB GTPase homolog E1B,
RAB GTPase homolog E1B		 0.89 0.3 -0.31
82 AT3G62030 rotamase CYP 4 cyclophilin 20-3, rotamase CYP 4 0.89 0.3 -0.33
83 AT1G35680 Ribosomal protein L21 chloroplast ribosomal protein L21 0.89 0.31 -0.33
84 AT3G14930 Uroporphyrinogen decarboxylase HEME1 0.89 0.33 -0.33
85 AT2G24090 Ribosomal protein L35 0.89 0.3 -0.32
86 AT3G27160 Ribosomal protein S21 family protein GLUCOSE HYPERSENSITIVE 1 0.89 0.3 -0.34
87 AT2G44920 Tetratricopeptide repeat (TPR)-like superfamily protein 0.89 0.33 -0.31
88 AT4G24930 thylakoid lumenal 17.9 kDa protein, chloroplast 0.89 0.31 -0.32
89 AT4G24750 Rhodanese/Cell cycle control phosphatase superfamily
protein		 0.89 0.32 -0.32
90 AT4G34290 SWIB/MDM2 domain superfamily protein 0.88 0.31 -0.32
91 AT2G44640 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: mitochondrion,
chloroplast, plasma membrane, plastid, chloroplast
envelope; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3769 (InterPro:IPR022244);
BEST Arabidopsis thaliana protein match is: pigment
defective 320 (TAIR:AT3G06960.1); Has 49 Blast hits to 48
proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes -
1 (source: NCBI BLink).		 0.88 0.33 -0.33
92 AT1G36390 Co-chaperone GrpE family protein 0.88 0.32 -0.32
93 AT3G18390 CRS1 / YhbY (CRM) domain-containing protein embryo defective 1865 0.88 0.3 -0.31
94 AT1G20810 FKBP-like peptidyl-prolyl cis-trans isomerase family
protein		 0.88 0.33 -0.32
95 AT1G50900 Ankyrin repeat family protein Grana Deficient Chloroplast 1,
LHCP translocation defect		 0.88 0.31 -0.3
96 AT3G55250 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, chloroplast, nucleus; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 46
Blast hits to 46 proteins in 17 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 PIGMENT DEFECTIVE 329 0.88 0.32 -0.3
97 AT3G23700 Nucleic acid-binding proteins superfamily 0.88 0.32 -0.34
98 AT3G05600 alpha/beta-Hydrolases superfamily protein 0.88 0.31 -0.31
99 AT3G47650 DnaJ/Hsp40 cysteine-rich domain superfamily protein 0.88 0.33 -0.31
100 AT4G20130 plastid transcriptionally active 14 plastid transcriptionally active
14		 0.88 0.33 -0.32
101 AT5G45930 magnesium chelatase i2 CHL I2, CHLI-2, magnesium
chelatase i2		 0.88 0.33 -0.32
102 AT2G35410 RNA-binding (RRM/RBD/RNP motifs) family protein 0.88 0.32 -0.32
103 AT2G43560 FKBP-like peptidyl-prolyl cis-trans isomerase family
protein		 0.88 0.33 -0.32
104 AT4G26370 antitermination NusB domain-containing protein 0.88 0.31 -0.33
105 AT4G39040 RNA-binding CRS1 / YhbY (CRM) domain protein 0.88 0.32 -0.31
106 AT3G26900 shikimate kinase like 1 Arabidopsis thaliana shikimate
kinase-like 1, shikimate
kinase-like 1		 0.88 0.32 -0.3
107 AT3G52960 Thioredoxin superfamily protein 0.88 0.3 -0.29
108 AT2G01590 chlororespiratory reduction 3 CHLORORESPIRATORY REDUCTION 3 0.88 0.31 -0.31
109 AT4G38160 Mitochondrial transcription termination factor family
protein		 pigment defective 191 0.88 0.32 -0.3
110 AT4G34190 stress enhanced protein 1 stress enhanced protein 1 0.88 0.33 -0.3
111 AT3G53900 uracil phosphoribosyltransferase PYRIMIDINE R, uracil
phosphoribosyltransferase		 0.88 0.34 -0.31
112 AT4G15510 Photosystem II reaction center PsbP family protein 0.88 0.31 -0.32
113 AT1G02150 Tetratricopeptide repeat (TPR)-like superfamily protein 0.88 0.32 -0.32
114 AT2G37220 RNA-binding (RRM/RBD/RNP motifs) family protein 0.88 0.32 -0.31
115 AT1G74970 ribosomal protein S9 ribosomal protein S9, TWN3 0.88 0.31 -0.32
116 AT3G25290 Auxin-responsive family protein -0.83 0.3 -0.33
117 AT2G28110 Exostosin family protein FRAGILE FIBER 8, IRREGULAR XYLEM 7 -0.78 0.32 -0.33
118 AT1G35260 MLP-like protein 165 MLP-like protein 165 -0.76 0.33 -0.32
119 AT1G76790 O-methyltransferase family protein indole glucosinolate
O-methyltransferase 5		 -0.76 0.32 -0.3
120 AT5G18780 F-box/RNI-like superfamily protein -0.76 0.31 -0.33
121 AT1G14240 GDA1/CD39 nucleoside phosphatase family protein -0.73 0.31 -0.32
122 AT5G49880 mitotic checkpoint family protein -0.7 0.33 -0.32
123 AT2G47130 NAD(P)-binding Rossmann-fold superfamily protein AtSDR3, short-chain
dehydrogenase/reductase 2		 -0.7 0.34 -0.31
124 AT1G69526 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.7 0.32 -0.34
125 AT3G54950 patatin-like protein 6 patatin-like protein 6,
PATATIN-LIKE PROTEIN 7,
patatin-related phospholipase
IIIbeta		 -0.69 0.32 -0.32
126 AT5G38030 MATE efflux family protein -0.67 0.3 -0.35
127 AT3G29035 NAC domain containing protein 3 Arabidopsis NAC domain containing
protein 59, NAC domain containing
protein 3, NAC domain containing
protein 3, ORE1 SISTER1		 -0.66 0.31 -0.32
128 AT4G23700 cation/H+ exchanger 17 cation/H+ exchanger 17, cation/H+
exchanger 17		 -0.66 0.32 -0.29
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
129 C0051 Aconitic acid cis-Aconitic acid cis-Aconitate glutamine biosynthesis III,
TCA cycle variation V (plant),
glyoxylate cycle,
TCA cycle variation III (eukaryotic) 		-0.77 0.48 -0.45 C0051