AT3G18940 : -
Query Information
Cytoscape Web will replace the contents of this div with your graph.
AGICode AT3G18940
Description clast3-related
Gene information
Help   
  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G18940 clast3-related 1 0.29 -0.31
2 AT5G62290 nucleotide-sensitive chloride conductance regulator (ICln)
family protein		 0.82 0.3 -0.32
3 AT5G13780 Acyl-CoA N-acyltransferases (NAT) superfamily protein 0.79 0.33 -0.31
4 AT1G20200 PAM domain (PCI/PINT associated module) protein EMBRYO DEFECTIVE 2719, HAPLESS 15 0.78 0.32 -0.31
5 AT2G30050 transducin family protein / WD-40 repeat family protein 0.78 0.3 -0.33
6 AT5G27470 seryl-tRNA synthetase / serine--tRNA ligase 0.78 0.3 -0.32
7 AT5G11630 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G17310.1); Has 90 Blast
hits to 90 proteins in 10 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.77 0.32 -0.28
8 AT1G70350 unknown protein; Has 98 Blast hits to 98 proteins in 11
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.76 0.32 -0.31
9 AT3G46060 RAB GTPase homolog 8A ARA-3, ARA3, RAB GTPase homolog
8A, ATRABE1C, RAB GTPase homolog
8A, RABE1c		 0.76 0.32 -0.29
10 AT1G22200 Endoplasmic reticulum vesicle transporter protein 0.76 0.33 -0.33
11 AT4G26650 RNA-binding (RRM/RBD/RNP motifs) family protein 0.76 0.32 -0.31
12 AT3G14290 20S proteasome alpha subunit E2 20S proteasome alpha subunit E2 0.76 0.31 -0.3
13 AT1G72730 DEA(D/H)-box RNA helicase family protein 0.76 0.31 -0.31
14 AT1G15480 Tetratricopeptide repeat (TPR)-like superfamily protein 0.75 0.32 -0.33
15 AT1G22450 cytochrome C oxidase 6B CYTOCHROME C OXIDASE 6B2,
cytochrome C oxidase 6B		 0.75 0.33 -0.31
16 AT1G63240 unknown protein; Has 460 Blast hits to 413 proteins in 106
species: Archae - 5; Bacteria - 12; Metazoa - 152; Fungi -
46; Plants - 43; Viruses - 2; Other Eukaryotes - 200
(source: NCBI BLink).		 -0.75 0.31 -0.31
17 AT1G14830 DYNAMIN-like 1C DYNAMIN-like 1C, ARABIDOPSIS
DYNAMIN-LIKE PROTEIN 5,
DYNAMIN-like 1C, DYNAMIN RELATED
PROTEIN 1C		 0.75 0.32 -0.33
18 AT1G26580 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: cellular_component
unknown; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; BEST Arabidopsis thaliana protein
match is: ELM2 domain-containing protein
(TAIR:AT2G03470.1); Has 161 Blast hits to 161 proteins in
17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi -
4; Plants - 156; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.75 0.28 -0.34
19 AT1G63000 nucleotide-rhamnose synthase/epimerase-reductase nucleotide-rhamnose
synthase/epimerase-reductase,
UDP-4-KETO-6-DEOXY-D-GLUCOSE-3,5-E
PIMERASE-4-REDUCTASE 1		 0.75 0.3 -0.33
20 AT2G23070 Protein kinase superfamily protein 0.75 0.29 -0.32
21 AT1G28510 Optic atrophy 3 protein (OPA3) 0.75 0.29 -0.31
22 AT5G44110 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 ATP-binding cassette A21,
ARABIDOPSIS THALIANA NON-INTRINSIC
ABC PROTEIN, ATPOP1, POP1		 0.75 0.32 -0.33
23 AT1G01910 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.75 0.31 -0.3
24 AT1G71940 SNARE associated Golgi protein family 0.75 0.31 -0.33
25 AT3G14600 Ribosomal protein L18ae/LX family protein 0.74 0.31 -0.32
26 AT1G65650 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 UCH2 0.74 0.32 -0.32
27 AT4G32400 Mitochondrial substrate carrier family protein ARABIDOPSIS THALIANA BRITTLE 1,
EMBRYO DEFECTIVE 104, EMBRYO
DEFECTIVE 42, SODIUM
HYPERSENSITIVE 1		 0.74 0.3 -0.31
28 AT5G55610 unknown protein; LOCATED IN: mitochondrion, chloroplast,
plastid, membrane; EXPRESSED IN: 25 plant structures;
EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to
1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 0.74 0.32 -0.32
29 AT2G22475 GRAM domain family protein GL2-EXPRESSION MODULATOR 0.74 0.32 -0.32
30 AT3G07590 Small nuclear ribonucleoprotein family protein 0.74 0.33 -0.31
31 AT3G22110 20S proteasome alpha subunit C1 20S proteasome alpha subunit C1 0.74 0.32 -0.31
32 AT5G02270 non-intrinsic ABC protein 9 ATP-binding cassette I20,
ARABIDOPSIS THALIANA NON-INTRINSIC
ABC PROTEIN 9, non-intrinsic ABC
protein 9		 0.74 0.33 -0.31
33 AT1G04750 vesicle-associated membrane protein 721 AT VAMP7B, ATVAMP721,
vesicle-associated membrane
protein 721, VESICLE-ASSOCIATED
MEMBRANE PROTEIN 7B		 0.74 0.32 -0.32
34 AT1G54160 nuclear factor Y, subunit A5 nuclear factor Y, subunit A5,
NUCLEAR FACTOR Y A5		 -0.74 0.31 -0.33
35 AT4G24820 26S proteasome, regulatory subunit Rpn7;Proteasome
component (PCI) domain		 0.74 0.32 -0.32
36 AT5G43720 Protein of unknown function (DUF2361) 0.74 0.3 -0.32
37 AT2G36310 uridine-ribohydrolase 1 nucleoside hydrolase 1,
uridine-ribohydrolase 1		 0.74 0.32 -0.29
38 AT5G09270 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.73 0.34 -0.31
39 AT3G02500 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G16030.1); Has 49 Blast hits
to 49 proteins in 10 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.73 0.31 -0.31
40 AT5G05780 RP non-ATPase subunit 8A ASYMMETRIC LEAVES ENHANCER 3,
ATHMOV34, RP non-ATPase subunit 8A		 0.73 0.32 -0.31
41 AT5G42420 Nucleotide-sugar transporter family protein 0.73 0.34 -0.29
42 AT1G52380 NUP50 (Nucleoporin 50 kDa) protein 0.73 0.3 -0.32
43 AT3G19630 Radical SAM superfamily protein 0.73 0.31 -0.32
44 AT1G17870 ethylene-dependent gravitropism-deficient and
yellow-green-like 3		 ETHYLENE-DEPENDENT
GRAVITROPISM-DEFICIENT AND
YELLOW-GREEN-LIKE 3,
ETHYLENE-DEPENDENT
GRAVITROPISM-DEFICIENT AND
YELLOW-GREEN-LIKE 3		 -0.73 0.33 -0.31
45 AT5G12410 THUMP domain-containing protein 0.73 0.3 -0.29
46 AT5G48070 xyloglucan endotransglucosylase/hydrolase 20 XYLOGLUCAN
ENDOTRANSGLUCOSYLASE/HYDROLASE 20,
xyloglucan
endotransglucosylase/hydrolase 20		 0.73 0.32 -0.31
47 AT1G71780 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endoplasmic reticulum; EXPRESSED IN: 25 plant structures;
EXPRESSED DURING: 15 growth stages; Has 34 Blast hits to 34
proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.73 0.32 -0.31
48 AT5G04600 RNA-binding (RRM/RBD/RNP motifs) family protein 0.73 0.31 -0.31
49 AT5G63400 adenylate kinase 1 adenylate kinase 1 0.73 0.32 -0.32
50 AT5G57370 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF1777 (InterPro:IPR013957); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.73 0.32 -0.32
51 AT5G49460 ATP citrate lyase subunit B 2 ATP citrate lyase subunit B 2 0.73 0.32 -0.31
52 AT1G31010 organellar single-stranded DNA binding protein 4 organellar single-stranded DNA
binding protein 4		 0.72 0.32 -0.31
53 AT1G08780 ABI3-interacting protein 3 ABI3-interacting protein 3,
PREFOLDIN 4		 0.72 0.32 -0.33
54 AT5G03650 starch branching enzyme 2.2 starch branching enzyme 2.2 -0.72 0.33 -0.3
55 AT2G44820 unknown protein; Has 70 Blast hits to 70 proteins in 25
species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 4;
Plants - 47; Viruses - 0; Other Eukaryotes - 10 (source:
NCBI BLink).		 0.72 0.31 -0.32
56 AT5G10930 CBL-interacting protein kinase 5 CBL-interacting protein kinase 5,
SNF1-RELATED PROTEIN KINASE 3.24		 -0.72 0.32 -0.29
57 AT3G57360 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G02370.2); Has 122 Blast hits
to 122 proteins in 54 species: Archae - 0; Bacteria - 0;
Metazoa - 74; Fungi - 4; Plants - 41; Viruses - 0; Other
Eukaryotes - 3 (source: NCBI BLink).		 0.72 0.3 -0.33
58 AT2G21160 Translocon-associated protein (TRAP), alpha subunit 0.72 0.32 -0.31
59 AT5G16930 AAA-type ATPase family protein 0.72 0.3 -0.32
60 AT2G15270 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF1168 (InterPro:IPR009548); Has 1930
Blast hits to 1364 proteins in 219 species: Archae - 0;
Bacteria - 44; Metazoa - 762; Fungi - 280; Plants - 96;
Viruses - 3; Other Eukaryotes - 745 (source: NCBI BLink).		 0.72 0.3 -0.3
61 AT1G07210 Ribosomal protein S18 0.72 0.31 -0.31
62 AT1G50370 Calcineurin-like metallo-phosphoesterase superfamily
protein		 AtFYPP1, flower- specific,
phytochrome-associated protein
phosphatase 1		 0.72 0.31 -0.32
63 AT5G14250 Proteasome component (PCI) domain protein CONSTITUTIVE PHOTOMORPHOGENIC 13,
COP9 SIGNALOSOME SUBUNIT 3, FUSCA
11		 0.72 0.33 -0.31
64 AT4G38060 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G65480.1); Has 63 Blast hits
to 63 proteins in 13 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.71 0.33 -0.31
65 AT1G49240 actin 8 actin 8, FRIZZY AND KINKED SHOOTS 0.71 0.32 -0.31
66 AT4G20890 tubulin beta-9 chain tubulin beta-9 chain 0.71 0.35 -0.33
67 AT2G34040 Apoptosis inhibitory protein 5 (API5) 0.71 0.31 -0.31
68 AT5G55940 Uncharacterised protein family (UPF0172) embryo defective 2731 0.71 0.3 -0.31
69 AT5G20570 RING-box 1 RING-BOX 1, HRT1, RING-box 1,
REGULATOR OF CULLINS-1		 0.71 0.33 -0.3
70 AT5G14450 GDSL-like Lipase/Acylhydrolase superfamily protein -0.7 0.31 -0.34
71 AT5G40200 DegP protease 9 DegP protease 9 0.7 0.32 -0.32
72 AT4G12590 Protein of unknown function DUF106, transmembrane 0.7 0.3 -0.29
73 AT3G55730 myb domain protein 109 myb domain protein 109, myb domain
protein 109		 0.7 0.32 -0.31
74 AT5G14240 Thioredoxin superfamily protein 0.7 0.32 -0.33
75 AT4G22200 potassium transport 2/3 AKT2, potassium transport 2/3,
AKT3, potassium transport 2/3		 -0.7 0.32 -0.32
76 AT5G25220 KNOTTED1-like homeobox gene 3 KNOTTED1-like homeobox gene 3 -0.7 0.32 -0.32
77 AT1G31020 thioredoxin O2 thioredoxin O2, thioredoxin O2 0.7 0.31 -0.29
78 AT1G72190 D-isomer specific 2-hydroxyacid dehydrogenase family
protein		 -0.7 0.3 -0.32
79 AT4G25280 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.7 0.31 -0.28
80 AT4G03200 catalytics -0.7 0.31 -0.3
81 AT1G09760 U2 small nuclear ribonucleoprotein A U2 small nuclear ribonucleoprotein
A		 0.7 0.33 -0.32
82 AT4G28540 casein kinase I-like 6 casein kinase I-like 6, PAPK1 0.7 0.31 -0.33
83 AT3G05530 regulatory particle triple-A ATPase 5A ATS6A.2, regulatory particle
triple-A ATPase 5A		 0.7 0.31 -0.32
84 AT2G34020 Calcium-binding EF-hand family protein 0.7 0.31 -0.33
85 AT1G53850 20S proteasome alpha subunit E1 ARABIDOPSIS 20S PROTEASOME ALPHA
SUBUNIT E1, 20S proteasome alpha
subunit E1		 0.69 0.33 -0.31
86 AT1G03070 Bax inhibitor-1 family protein -0.69 0.31 -0.35
87 AT1G73250 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase 1 ACTIVATING TRANSCRIPTION FACTOR 5,
GDP-4-keto-6-deoxymannose-3,5-epim
erase-4-reductase 1		 0.69 0.31 -0.3
88 AT4G30960 SOS3-interacting protein 3 CBL-INTERACTING PROTEIN KINASE 6,
CBL-INTERACTING PROTEIN KINASE 6,
SOS3-interacting protein 3,
SNF1-RELATED PROTEIN KINASE 3.14		 -0.69 0.32 -0.32
89 AT1G19520 pentatricopeptide (PPR) repeat-containing protein NUCLEAR FUSION DEFECTIVE 5 0.69 0.33 -0.32
90 AT3G13784 cell wall invertase 5 cell wall invertase 5, cell wall
invertase 5		 -0.69 0.32 -0.32
91 AT1G18580 galacturonosyltransferase 11 galacturonosyltransferase 11 0.69 0.32 -0.3
92 AT3G59990 methionine aminopeptidase 2B methionine aminopeptidase 2B 0.69 0.3 -0.32
93 AT3G60600 vesicle associated protein (AT)VAP, vesicle associated
protein, VAP27,
VAMP/SYNAPTOBREVIN-ASSOCIATED
PROTEIN 27-1		 0.69 0.34 -0.31
94 AT3G03420 Ku70-binding family protein 0.69 0.31 -0.32
95 AT1G19370 unknown protein; LOCATED IN: endoplasmic reticulum;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT1G75140.1); Has 45 Blast hits to 43
proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes -
1 (source: NCBI BLink).		 0.69 0.33 -0.31
96 AT3G12130 KH domain-containing protein / zinc finger (CCCH type)
family protein		 0.69 0.3 -0.33
97 AT5G25560 CHY-type/CTCHY-type/RING-type Zinc finger protein -0.68 0.3 -0.31
98 AT4G04740 calcium-dependent protein kinase 23 ATCPK23, calcium-dependent protein
kinase 23		 -0.68 0.33 -0.31
99 AT1G80310 sulfate transmembrane transporters molybdate transporter 2 -0.68 0.33 -0.31
100 AT4G34560 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G66440.1); Has 67 Blast hits
to 66 proteins in 11 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.68 0.31 -0.32
101 AT1G11720 starch synthase 3 starch synthase 3, starch synthase
3		 -0.68 0.31 -0.31
102 AT1G16780 Inorganic H pyrophosphatase family protein AtVHP2;2, VHP2;2 -0.68 0.32 -0.3
103 AT1G80800 pseudogene, 40S ribosomal protein S12 (RPS12B), similar to
ribosomal protein S12 GB:AAD39838 GI:5106775 from (Hordeum
vulgare); blastp match of 65% identity and 4.7e-12 P-value
to GP|23617253|dbj|BAC20920.1||AP005764 putative 40S
ribosomal protein S12 {Oryza sativa (japonica
cultivar-group)}		 -0.67 0.29 -0.33
104 AT5G06530 ABC-2 type transporter family protein ATP-binding cassette G22,
Arabidopsis thaliana ATP-binding
cassette G22		 -0.67 0.31 -0.31
105 AT5G33280 Voltage-gated chloride channel family protein -0.67 0.34 -0.32
106 AT4G04750 Major facilitator superfamily protein -0.66 0.3 -0.34
107 AT2G30790 photosystem II subunit P-2 photosystem II subunit P-2 -0.66 0.32 -0.32
108 AT1G50950 Thioredoxin protein with domain of unknown function
(DUF1692)		 -0.66 0.31 -0.31
109 AT5G46880 homeobox-7 homeobox-7, HOMEODOMAIN GLABROUS 5 -0.66 0.31 -0.3
110 AT2G17970 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.66 0.32 -0.3
111 AT3G55850 Amidohydrolase family LONG AFTER FAR-RED 3, LONG AFTER
FAR-RED 3 ISOFORM 1, LAF3 ISOFORM
2		 -0.66 0.32 -0.29
112 AT1G63740 Disease resistance protein (TIR-NBS-LRR class) family -0.65 0.3 -0.32
113 AT4G26090 NB-ARC domain-containing disease resistance protein RESISTANT TO P. SYRINGAE 2 -0.65 0.33 -0.3
114 AT1G74300 alpha/beta-Hydrolases superfamily protein -0.65 0.33 -0.31
115 AT2G14080 Disease resistance protein (TIR-NBS-LRR class) family -0.65 0.3 -0.32
116 AT5G13690 alpha-N-acetylglucosaminidase family / NAGLU family CYCLOPS 1,
N-ACETYL-GLUCOSAMINIDASE		 -0.65 0.32 -0.32
117 AT3G56080 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.65 0.32 -0.3
118 ATCG00550 photosystem II reaction center protein J photosystem II reaction center
protein J		 -0.65 0.32 -0.32
119 AT5G27950 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.64 0.32 -0.31
120 AT5G23800 DOMAIN OF UNKNOWN FUNCTION 724 10 DOMAIN OF UNKNOWN FUNCTION 724 10,
DOMAIN OF UNKNOWN FUNCTION 724 10		 -0.64 0.32 -0.32
121 AT2G28490 RmlC-like cupins superfamily protein -0.64 0.31 -0.33
122 AT3G09600 Homeodomain-like superfamily protein LHY-CCA1-LIKE5, REVEILLE 8 -0.64 0.31 -0.33
123 AT2G23200 Protein kinase superfamily protein -0.64 0.31 -0.32
124 AT1G29240 Protein of unknown function (DUF688) -0.63 0.34 -0.31
125 AT1G19835 Plant protein of unknown function (DUF869) -0.63 0.31 -0.31
126 AT2G05370 BEST Arabidopsis thaliana protein match is: RNA-dependent
RNA polymerase 6 (TAIR:AT3G49500.1); Has 65 Blast hits to
37 proteins in 13 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.63 0.3 -0.32
127 AT3G03620 MATE efflux family protein -0.62 0.32 -0.32
128 AT5G05220 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.62 0.32 -0.31
129 ATCG00560 photosystem II reaction center protein L photosystem II reaction center
protein L		 -0.62 0.32 -0.32
130 AT5G58160 actin binding -0.62 0.33 -0.31
131 AT3G13065 STRUBBELIG-receptor family 4 STRUBBELIG-receptor family 4 -0.61 0.31 -0.3
132 AT5G45090 phloem protein 2-A7 phloem protein 2-A7, phloem
protein 2-A7		 -0.61 0.3 -0.3
133 AT1G01830 ARM repeat superfamily protein -0.61 0.31 -0.31
134 AT2G10880 transposable element gene -0.6 0.31 -0.33
135 AT3G21210 zinc ion binding -0.6 0.3 -0.29
136 AT5G25470 AP2/B3-like transcriptional factor family protein -0.6 0.32 -0.34
137 AT3G22490 Seed maturation protein -0.6 0.33 -0.3
138 AT1G73680 alpha dioxygenase alpha dioxygenase -0.6 0.33 -0.32
Metabolite information
Help   
  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
139 C0184 MST_3110.4 - - - -0.69 0.49 -0.46