AT3G13160 : -
Query Information
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AGICode AT3G13160
Description Tetratricopeptide repeat (TPR)-like superfamily protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G13160 Tetratricopeptide repeat (TPR)-like superfamily protein 1 0.33 -0.34
2 AT3G27280 prohibitin 4 prohibitin 4, prohibitin 4 0.87 0.32 -0.31
3 AT2G39795 Mitochondrial glycoprotein family protein 0.87 0.3 -0.31
4 AT5G11630 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G17310.1); Has 90 Blast
hits to 90 proteins in 10 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.86 0.32 -0.36
5 AT4G30800 Nucleic acid-binding, OB-fold-like protein 0.84 0.31 -0.34
6 AT5G22650 histone deacetylase 2B ARABIDOPSIS HISTONE DEACETYLASE 2,
ATHD2B, HISTONE DEACETYLASE 2,
histone deacetylase 2B, HDA4,
HDT02, HDT2		 0.84 0.33 -0.3
7 AT5G08180 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.83 0.31 -0.3
8 AT3G60360 embryo sac development arrest 14 EMBRYO SAC DEVELOPMENT ARREST 14,
U3 SMALL NUCLEOLAR RNA-ASSOCIATED
PROTEIN 11		 0.83 0.3 -0.31
9 AT3G05060 NOP56-like pre RNA processing ribonucleoprotein 0.83 0.34 -0.32
10 AT5G23300 pyrimidine d pyrimidine d 0.83 0.31 -0.32
11 AT3G07590 Small nuclear ribonucleoprotein family protein 0.82 0.3 -0.32
12 AT2G20940 Protein of unknown function (DUF1279) 0.82 0.3 -0.32
13 AT2G19670 protein arginine methyltransferase 1A ARABIDOPSIS THALIANA PROTEIN
ARGININE METHYLTRANSFERASE 1A,
protein arginine methyltransferase
1A		 0.82 0.31 -0.32
14 AT5G16930 AAA-type ATPase family protein 0.82 0.32 -0.3
15 AT1G23100 GroES-like family protein 0.81 0.29 -0.32
16 AT3G55605 Mitochondrial glycoprotein family protein 0.81 0.28 -0.32
17 AT3G17465 ribosomal protein L3 plastid ribosomal protein L3 plastid 0.81 0.32 -0.32
18 AT4G25630 fibrillarin 2 ATFIB2, fibrillarin 2 0.81 0.3 -0.31
19 AT1G15480 Tetratricopeptide repeat (TPR)-like superfamily protein 0.8 0.3 -0.32
20 AT2G31410 unknown protein; Has 1719 Blast hits to 1091 proteins in
184 species: Archae - 5; Bacteria - 24; Metazoa - 559;
Fungi - 169; Plants - 192; Viruses - 1; Other Eukaryotes -
769 (source: NCBI BLink).		 0.8 0.31 -0.32
21 AT2G33210 heat shock protein 60-2 heat shock protein 60-2 0.8 0.31 -0.32
22 AT5G61030 glycine-rich RNA-binding protein 3 glycine-rich RNA-binding protein 3 0.8 0.33 -0.32
23 AT4G13850 glycine-rich RNA-binding protein 2 GLYCINE-RICH RNA-BINDING PROTEIN
2, glycine-rich RNA-binding
protein 2, glycine rich protein 2		 0.8 0.3 -0.31
24 AT4G15640 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G21465.1); Has 38 Blast hits
to 38 proteins in 14 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.8 0.3 -0.31
25 AT1G72730 DEA(D/H)-box RNA helicase family protein 0.8 0.29 -0.33
26 AT4G29890 choline monooxygenase, putative (CMO-like) -0.79 0.31 -0.33
27 AT4G39300 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 0.79 0.29 -0.34
28 AT2G30050 transducin family protein / WD-40 repeat family protein 0.79 0.32 -0.32
29 AT5G40770 prohibitin 3 prohibitin 3, prohibitin 3 0.79 0.3 -0.29
30 AT5G02050 Mitochondrial glycoprotein family protein 0.78 0.33 -0.31
31 AT4G23620 Ribosomal protein L25/Gln-tRNA synthetase,
anti-codon-binding domain		 0.78 0.31 -0.3
32 AT1G64220 translocase of outer membrane 7 kDa subunit 2 translocase of outer membrane 7
kDa subunit 2		 0.78 0.3 -0.31
33 AT3G22300 ribosomal protein S10 ribosomal protein S10 0.78 0.32 -0.34
34 AT5G27470 seryl-tRNA synthetase / serine--tRNA ligase 0.78 0.31 -0.32
35 AT4G15475 F-box/RNI-like superfamily protein -0.78 0.31 -0.31
36 AT5G07110 prenylated RAB acceptor 1.B6 prenylated RAB acceptor 1.B6 0.77 0.34 -0.31
37 AT4G35050 Transducin family protein / WD-40 repeat family protein MULTICOPY SUPPRESSOR OF IRA1 3,
NUCLEOSOME/CHROMATIN ASSEMBLY
FACTOR GROUP C 3		 0.77 0.33 -0.34
38 AT2G29540 RNApolymerase 14 kDa subunit ATRPAC14, RNApolymerase 14 kDa
subunit, RNApolymerase 14 kDa
subunit		 0.77 0.3 -0.32
39 AT1G72650 TRF-like 6 TRF-like 6 -0.77 0.31 -0.32
40 AT5G67630 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.77 0.3 -0.32
41 AT5G60730 Anion-transporting ATPase 0.77 0.3 -0.33
42 AT5G26360 TCP-1/cpn60 chaperonin family protein 0.77 0.32 -0.31
43 AT3G03060 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.77 0.33 -0.31
44 AT3G23830 glycine-rich RNA-binding protein 4 AtGRP4, GR-RBP4, glycine-rich
RNA-binding protein 4		 0.76 0.31 -0.34
45 AT3G02190 Ribosomal protein L39 family protein 0.76 0.31 -0.32
46 AT3G15000 cobalt ion binding 0.76 0.34 -0.32
47 AT5G04600 RNA-binding (RRM/RBD/RNP motifs) family protein 0.76 0.31 -0.32
48 AT4G20020 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G44780.1); Has 28928 Blast
hits to 16023 proteins in 1033 species: Archae - 4;
Bacteria - 4155; Metazoa - 15463; Fungi - 2938; Plants -
3091; Viruses - 205; Other Eukaryotes - 3072 (source: NCBI
BLink).		 0.76 0.32 -0.32
49 AT5G14250 Proteasome component (PCI) domain protein CONSTITUTIVE PHOTOMORPHOGENIC 13,
COP9 SIGNALOSOME SUBUNIT 3, FUSCA
11		 0.76 0.31 -0.31
50 AT3G51830 SAC domain-containing protein 8 ATG5, SAC domain-containing
protein 8		 -0.75 0.33 -0.3
51 AT1G27390 translocase outer membrane 20-2 translocase outer membrane 20-2 0.75 0.32 -0.27
52 AT4G04740 calcium-dependent protein kinase 23 ATCPK23, calcium-dependent protein
kinase 23		 -0.75 0.32 -0.31
53 AT5G11760 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF1764, eukaryotic (InterPro:IPR013885);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants -
385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI
BLink).		 0.75 0.32 -0.32
54 AT1G23320 tryptophan aminotransferase related 1 tryptophan aminotransferase
related 1		 0.75 0.31 -0.31
55 AT5G09900 26S proteasome regulatory subunit, putative (RPN5) EMBRYO DEFECTIVE 2107, MARIPOSA,
REGULATORY PARTICLE NON-ATPASE
SUBUNIT 5A		 0.75 0.31 -0.32
56 AT5G48070 xyloglucan endotransglucosylase/hydrolase 20 XYLOGLUCAN
ENDOTRANSGLUCOSYLASE/HYDROLASE 20,
xyloglucan
endotransglucosylase/hydrolase 20		 0.75 0.32 -0.32
57 AT5G62290 nucleotide-sensitive chloride conductance regulator (ICln)
family protein		 0.75 0.32 -0.33
58 AT1G04070 translocase of outer membrane 22-I ATTOM22-I, translocase of outer
membrane 22-I		 0.75 0.31 -0.35
59 AT5G56500 TCP-1/cpn60 chaperonin family protein chaperonin-60beta3 0.74 0.32 -0.32
60 AT2G40420 Transmembrane amino acid transporter family protein -0.74 0.31 -0.33
61 AT2G25590 Plant Tudor-like protein -0.74 0.31 -0.3
62 AT1G19650 Sec14p-like phosphatidylinositol transfer family protein -0.74 0.32 -0.33
63 AT4G01280 Homeodomain-like superfamily protein -0.74 0.32 -0.32
64 AT5G45090 phloem protein 2-A7 phloem protein 2-A7, phloem
protein 2-A7		 -0.74 0.32 -0.33
65 AT1G31010 organellar single-stranded DNA binding protein 4 organellar single-stranded DNA
binding protein 4		 0.74 0.29 -0.31
66 AT4G36680 Tetratricopeptide repeat (TPR)-like superfamily protein 0.74 0.31 -0.29
67 AT5G01670 NAD(P)-linked oxidoreductase superfamily protein -0.74 0.32 -0.31
68 AT1G49410 translocase of the outer mitochondrial membrane 6 translocase of the outer
mitochondrial membrane 6		 0.74 0.31 -0.31
69 AT1G57620 emp24/gp25L/p24 family/GOLD family protein 0.74 0.31 -0.32
70 AT2G18520 Tetratricopeptide repeat (TPR)-like superfamily protein 0.74 0.32 -0.31
71 AT5G12410 THUMP domain-containing protein 0.74 0.31 -0.32
72 AT4G31580 serine/arginine-rich 22 RS-containing zinc finger protein
22, RS-containing zinc finger
protein 22, RS-CONTAINING ZINC
FINGER PROTEIN 22,
serine/arginine-rich 22, SRZ22		 0.74 0.32 -0.3
73 AT4G30930 Ribosomal protein L21 NUCLEAR FUSION DEFECTIVE 1 0.74 0.29 -0.31
74 AT5G49460 ATP citrate lyase subunit B 2 ATP citrate lyase subunit B 2 0.74 0.31 -0.31
75 AT3G49320 Metal-dependent protein hydrolase 0.73 0.32 -0.31
76 AT3G02490 Pentatricopeptide repeat (PPR) superfamily protein 0.73 0.3 -0.31
77 AT5G02270 non-intrinsic ABC protein 9 ATP-binding cassette I20,
ARABIDOPSIS THALIANA NON-INTRINSIC
ABC PROTEIN 9, non-intrinsic ABC
protein 9		 0.73 0.32 -0.32
78 AT5G13780 Acyl-CoA N-acyltransferases (NAT) superfamily protein 0.73 0.33 -0.32
79 AT3G17910 Surfeit locus 1 cytochrome c oxidase biogenesis protein EMBRYO DEFECTIVE 3121, SURFEIT 1 0.73 0.32 -0.32
80 AT1G80720 Mitochondrial glycoprotein family protein 0.73 0.32 -0.32
81 AT4G38060 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G65480.1); Has 63 Blast hits
to 63 proteins in 13 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.72 0.35 -0.33
82 AT3G09600 Homeodomain-like superfamily protein LHY-CCA1-LIKE5, REVEILLE 8 -0.72 0.31 -0.3
83 AT3G56140 Protein of unknown function (DUF399 and DUF3411) -0.71 0.32 -0.33
84 AT5G05220 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.7 0.32 -0.33
85 AT3G59090 CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF1084 (InterPro:IPR009457); BEST Arabidopsis thaliana
protein match is: tobamovirus multiplication 1
(TAIR:AT4G21790.1); Has 196 Blast hits to 195 proteins in
29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
2; Plants - 188; Viruses - 0; Other Eukaryotes - 6 (source:
NCBI BLink).		 -0.7 0.32 -0.3
86 AT5G11350 DNAse I-like superfamily protein -0.68 0.31 -0.31
87 AT1G05200 glutamate receptor 3.4 glutamate receptor 3.4, glutamate
receptor 3.4, GLUR3		 -0.68 0.29 -0.32
88 AT1G73170 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.68 0.31 -0.3
89 AT5G66110 Heavy metal transport/detoxification superfamily protein heavy metal associated
isoprenylated plant protein 27		 -0.68 0.32 -0.33
90 AT1G16730 unknown protein 6 unknown protein 6 -0.68 0.33 -0.31
91 AT3G02300 Regulator of chromosome condensation (RCC1) family protein -0.67 0.31 -0.32
92 AT4G02120 CTP synthase family protein -0.67 0.32 -0.32
93 AT3G17980 Calcium-dependent lipid-binding (CaLB domain) family
protein		 Arabidopsis thaliana C2 domain, C2
domain		 -0.67 0.3 -0.32
94 AT1G02960 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G02965.1); Has 83 Blast hits
to 82 proteins in 37 species: Archae - 0; Bacteria - 2;
Metazoa - 20; Fungi - 7; Plants - 29; Viruses - 0; Other
Eukaryotes - 25 (source: NCBI BLink).		 -0.67 0.33 -0.3
95 AT3G19900 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3067 (InterPro:IPR021420);
Has 276 Blast hits to 276 proteins in 83 species: Archae -
0; Bacteria - 112; Metazoa - 0; Fungi - 2; Plants - 59;
Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).		 -0.67 0.31 -0.32
96 AT1G80800 pseudogene, 40S ribosomal protein S12 (RPS12B), similar to
ribosomal protein S12 GB:AAD39838 GI:5106775 from (Hordeum
vulgare); blastp match of 65% identity and 4.7e-12 P-value
to GP|23617253|dbj|BAC20920.1||AP005764 putative 40S
ribosomal protein S12 {Oryza sativa (japonica
cultivar-group)}		 -0.67 0.33 -0.31
97 AT2G14080 Disease resistance protein (TIR-NBS-LRR class) family -0.67 0.31 -0.33
98 AT3G06510 Glycosyl hydrolase superfamily protein SENSITIVE TO FREEZING 2, SENSITIVE
TO FREEZING 2		 -0.66 0.3 -0.31
99 AT5G58200 Calcineurin-like metallo-phosphoesterase superfamily
protein		 -0.66 0.32 -0.29
100 AT4G00750 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.66 0.34 -0.3
101 AT1G72190 D-isomer specific 2-hydroxyacid dehydrogenase family
protein		 -0.66 0.33 -0.34
102 AT4G19500 nucleoside-triphosphatases;transmembrane
receptors;nucleotide binding;ATP binding		 -0.66 0.3 -0.3
103 AT4G04150 transposable element gene -0.66 0.31 -0.33
104 AT3G45420 Concanavalin A-like lectin protein kinase family protein -0.66 0.32 -0.32
105 AT1G15060 Uncharacterised conserved protein UCP031088, alpha/beta
hydrolase		 -0.65 0.28 -0.3
106 AT4G21650 Subtilase family protein -0.65 0.3 -0.32
107 AT1G47280 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 9 plant structures;
EXPRESSED DURING: L mature pollen stage, M germinated
pollen stage, 4 anthesis, C globular stage, petal
differentiation and expansion stage; Has 6 Blast hits to 6
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 -0.65 0.31 -0.32
108 AT2G21820 unknown protein; Has 45 Blast hits to 45 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.65 0.32 -0.32
109 AT3G57470 Insulinase (Peptidase family M16) family protein -0.65 0.31 -0.3
110 AT4G13810 receptor like protein 47 receptor like protein 47, receptor
like protein 47		 -0.65 0.31 -0.32
111 AT1G73750 Uncharacterised conserved protein UCP031088, alpha/beta
hydrolase		 -0.64 0.3 -0.31
112 AT2G46180 golgin candidate 4 golgin candidate 4 -0.64 0.34 -0.3
113 AT3G43220 Phosphoinositide phosphatase family protein -0.64 0.29 -0.31
114 AT3G63520 carotenoid cleavage dioxygenase 1 CAROTENOID CLEAVAGE DIOXYGENASE 1,
ATNCED1, carotenoid cleavage
dioxygenase 1, NCED1		 -0.64 0.31 -0.32
115 AT3G08850 HEAT repeat ;WD domain, G-beta repeat protein protein ATRAPTOR1B, RAPTOR1, RAPTOR1B -0.64 0.31 -0.32
116 AT1G05030 Major facilitator superfamily protein -0.64 0.31 -0.33
117 AT1G11720 starch synthase 3 starch synthase 3, starch synthase
3		 -0.64 0.36 -0.34
118 AT3G03620 MATE efflux family protein -0.63 0.31 -0.33
119 AT4G16160 Mitochondrial import inner membrane translocase subunit
Tim17/Tim22/Tim23 family protein		 ATOEP16-2, ATOEP16-S -0.63 0.32 -0.33
120 AT3G59300 Pentatricopeptide repeat (PPR) superfamily protein -0.63 0.3 -0.33
121 AT2G46690 SAUR-like auxin-responsive protein family -0.63 0.33 -0.31
122 AT5G58160 actin binding -0.63 0.29 -0.33
123 ATCG00550 photosystem II reaction center protein J photosystem II reaction center
protein J		 -0.63 0.31 -0.3
124 AT5G64280 dicarboxylate transporter 2.2 dicarboxylate transporter 2.2 -0.63 0.31 -0.31
125 AT2G48110 reduced epidermal fluorescence 4 MED33B, REDUCED EPIDERMAL
FLUORESCENCE 4		 -0.63 0.31 -0.34
126 AT4G26980 RNI-like superfamily protein -0.63 0.3 -0.32
127 AT5G35180 Protein of unknown function (DUF1336) -0.63 0.35 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
128 C0030 3-Methylsulfinyl-n-propylglucosinolate - 3-Methylsulfinylpropyl-glucosinolate glucosinolate biosynthesis from homomethionine -0.7 0.48 -0.46 C0030
129 C0099 Glucose-1-phosphate α,β-D-Glucose-1-phosphate α-D-Glucose-1-phosphate; β-D-Glucose-1-phosphate galactose degradation I (Leloir pathway) -0.69 0.44 -0.45 C0099
130 C0097 Glucosamine-6-phosphate D-Glucosamine-6-phosphate D-Glucosamine-6-phosphate UDP-N-acetyl-D-glucosamine biosynthesis II -0.63 0.31 -0.32 C0097