AT3G24140 : FAMA
Query Information
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AGICode AT3G24140
Description basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G24140 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 FAMA 1 0.32 -0.3
2 AT1G33811 GDSL-like Lipase/Acylhydrolase superfamily protein 0.8 0.32 -0.33
3 AT1G04800 glycine-rich protein 0.8 0.32 -0.33
4 AT5G60880 breaking of asymmetry in the stomatal lineage BREAKING OF ASYMMETRY IN THE
STOMATAL LINEAGE		 0.79 0.32 -0.29
5 AT3G49900 Phototropic-responsive NPH3 family protein 0.77 0.32 -0.31
6 AT5G19250 Glycoprotein membrane precursor GPI-anchored 0.77 0.32 -0.32
7 AT3G49560 Mitochondrial import inner membrane translocase subunit
Tim17/Tim22/Tim23 family protein		 0.76 0.32 -0.32
8 AT1G04530 Tetratricopeptide repeat (TPR)-like superfamily protein tetratricopeptide repeat 4 0.76 0.31 -0.31
9 AT2G18360 alpha/beta-Hydrolases superfamily protein -0.75 0.33 -0.32
10 AT1G01540 Protein kinase superfamily protein 0.74 0.33 -0.32
11 AT1G78960 lupeol synthase 2 lupeol synthase 2, lupeol synthase
2		 -0.74 0.32 -0.32
12 AT3G03170 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G24890.1); Has 184 Blast hits
to 184 proteins in 18 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 184; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.73 0.31 -0.31
13 AT3G01860 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: response to cadmium ion; LOCATED IN:
chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT3G27210.1); Has 66 Blast
hits to 66 proteins in 13 species: Archae - 0; Bacteria -
0; Metazoa - 5; Fungi - 0; Plants - 61; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.73 0.32 -0.31
14 AT1G03440 Leucine-rich repeat (LRR) family protein 0.73 0.33 -0.31
15 AT5G18430 GDSL-like Lipase/Acylhydrolase superfamily protein 0.72 0.33 -0.34
16 AT4G34860 Plant neutral invertase family protein alkaline/neutral invertase B -0.72 0.32 -0.3
17 AT4G34600 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: pollen tube growth; LOCATED IN: endomembrane
system; EXPRESSED IN: 11 plant structures; EXPRESSED
DURING: M germinated pollen stage, LP.04 four leaves
visible, 4 anthesis, petal differentiation and expansion
stage; BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT2G16385.1); Has 17 Blast hits to 17
proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.72 0.32 -0.33
18 AT1G23120 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 -0.71 0.32 -0.3
19 AT5G25840 Protein of unknown function (DUF1677) 0.71 0.34 -0.33
20 AT1G59740 Major facilitator superfamily protein -0.71 0.32 -0.31
21 AT1G30270 CBL-interacting protein kinase 23 ATCIPK23, CBL-interacting protein
kinase 23, LOW-K+-SENSITIVE 1,
SOS2-like protein kinase 17,
SNF1-RELATED PROTEIN KINASE 3.23		 -0.71 0.32 -0.33
22 AT5G04820 ovate family protein 13 ARABIDOPSIS THALIANA OVATE FAMILY
PROTEIN 13, ovate family protein
13		 0.7 0.32 -0.3
23 AT4G37280 MRG family protein 0.7 0.3 -0.32
24 AT2G25940 alpha-vacuolar processing enzyme alpha-vacuolar processing enzyme,
ALPHAVPE		 -0.7 0.33 -0.31
25 AT5G08330 TCP family transcription factor AtTCP11, TCP domain protein 11 0.7 0.33 -0.32
26 AT1G59650 Protein of unknown function (DUF1336) CW14 -0.7 0.33 -0.33
27 AT2G14260 proline iminopeptidase proline iminopeptidase 0.69 0.31 -0.34
28 AT2G43860 Pectin lyase-like superfamily protein -0.69 0.31 -0.33
29 AT2G22680 Zinc finger (C3HC4-type RING finger) family protein WAV3 homolog 1 -0.69 0.35 -0.32
30 AT5G53940 Yippee family putative zinc-binding protein 0.69 0.32 -0.32
31 AT1G09795 ATP phosphoribosyl transferase 2 ATP phosphoribosyl transferase 2,
ATP phosphoribosyl transferase 2,
HISN1B		 0.69 0.32 -0.31
32 AT3G11945 homogentisate prenyltransferase homogentisate prenyltransferase,
homogentisate prenyltransferase,
PHYTOENE DESATURATION 2		 0.69 0.31 -0.32
33 AT2G25790 Leucine-rich receptor-like protein kinase family protein -0.69 0.32 -0.32
34 AT1G08810 myb domain protein 60 myb domain protein 60, myb domain
protein 60		 0.69 0.31 -0.32
35 AT2G18245 alpha/beta-Hydrolases superfamily protein 0.69 0.29 -0.34
36 AT2G41070 Basic-leucine zipper (bZIP) transcription factor family
protein		 ATBZIP12, DPBF4, ENHANCED EM LEVEL -0.69 0.3 -0.31
37 AT3G10970 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 0.69 0.3 -0.32
38 AT3G47380 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 0.68 0.35 -0.3
39 AT1G71750 Hypoxanthine-guanine phosphoribosyltransferase Hypoxanthine-guanine
phosphoribosyltransferase		 0.68 0.31 -0.33
40 AT4G27890 HSP20-like chaperones superfamily protein 0.68 0.3 -0.3
41 AT3G19100 Protein kinase superfamily protein -0.68 0.32 -0.29
42 AT2G42590 general regulatory factor 9 GF14 MU, general regulatory factor
9		 0.68 0.3 -0.31
43 AT2G24260 LJRHL1-like 1 LJRHL1-like 1 -0.68 0.32 -0.32
44 AT3G02570 Mannose-6-phosphate isomerase, type I MATERNAL EFFECT EMBRYO ARREST 31,
PHOSPHOMANNOSE ISOMERASE 1		 0.68 0.32 -0.34
45 AT3G12500 basic chitinase basic chitinase, B-CHI, CHI-B,
basic chitinase,
PATHOGENESIS-RELATED 3,
PATHOGENESIS-RELATED 3		 -0.67 0.31 -0.34
46 AT5G66800 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G50640.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 0.67 0.29 -0.29
47 AT3G09980 Family of unknown function (DUF662) 0.67 0.31 -0.32
48 AT3G57230 AGAMOUS-like 16 AGAMOUS-like 16 0.67 0.28 -0.31
49 AT2G46950 cytochrome P450, family 709, subfamily B, polypeptide 2 cytochrome P450, family 709,
subfamily B, polypeptide 2		 -0.67 0.33 -0.32
50 AT4G00200 AT hook motif DNA-binding family protein -0.67 0.32 -0.32
51 AT2G25220 Protein kinase superfamily protein 0.67 0.29 -0.33
52 AT1G30825 Arp2/3 complex, 34 kD subunit p34-Arc ACTIN-RELATED PROTEIN C2A,
DISTORTED TRICHOMES 2		 0.67 0.33 -0.32
53 AT4G13030 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.67 0.33 -0.3
54 AT1G21065 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: Uncharacterised protein family UPF0047
(InterPro:IPR001602); Has 3800 Blast hits to 3784 proteins
in 1137 species: Archae - 215; Bacteria - 2154; Metazoa -
42; Fungi - 99; Plants - 99; Viruses - 0; Other Eukaryotes
- 1191 (source: NCBI BLink).		 0.67 0.31 -0.3
55 AT2G02450 NAC domain containing protein 35 Arabidopsis NAC domain containing
protein 34, NAC domain containing
protein 35, LONG VEGETATIVE PHASE
1, NAC domain containing protein
35		 0.67 0.34 -0.32
56 AT1G74810 HCO3- transporter family BOR5 0.66 0.33 -0.3
57 AT2G45120 C2H2-like zinc finger protein 0.66 0.33 -0.34
58 AT1G61170 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 19 plant
structures; EXPRESSED DURING: 12 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G11125.1); Has 54 Blast hits to 54 proteins in 15
species: Archae - 0; Bacteria - 0; Metazoa - 17; Fungi - 0;
Plants - 34; Viruses - 1; Other Eukaryotes - 2 (source:
NCBI BLink).		 0.66 0.33 -0.31
59 AT1G33790 jacalin lectin family protein -0.66 0.3 -0.32
60 AT2G42430 lateral organ boundaries-domain 16 ASYMMETRIC LEAVES2-LIKE 18,
lateral organ boundaries-domain 16		 -0.66 0.32 -0.3
61 AT5G64813 Ras-related small GTP-binding family protein Light Insensitive Period1 0.66 0.31 -0.33
62 AT2G15280 Reticulon family protein 0.65 0.32 -0.35
63 AT4G08780 Peroxidase superfamily protein -0.65 0.32 -0.29
64 AT5G67560 ADP-ribosylation factor-like A1D ADP-ribosylation factor-like A1D,
ADP-ribosylation factor-like A1D		 0.65 0.31 -0.34
65 AT2G30500 Kinase interacting (KIP1-like) family protein -0.65 0.32 -0.31
66 AT1G08750 Peptidase C13 family 0.65 0.31 -0.32
67 AT1G60140 trehalose phosphate synthase trehalose phosphate synthase,
trehalose phosphate synthase,
TREHALOSE PHOSPHATE SYNTHASE 10		 -0.65 0.33 -0.31
68 AT4G37890 Zinc finger (C3HC4-type RING finger) family protein embryo sac development arrest 40 -0.65 0.32 -0.32
69 AT1G62400 Protein kinase superfamily protein high leaf temperature 1 0.64 0.31 -0.33
70 AT1G01380 Homeodomain-like superfamily protein ENHANCER OF TRY AND CPC 1 0.64 0.32 -0.33
71 AT2G15580 RING/U-box superfamily protein 0.64 0.32 -0.28
72 AT3G52550 BEST Arabidopsis thaliana protein match is: ovate family
protein 18 (TAIR:AT3G52540.1); Has 5496 Blast hits to 1338
proteins in 151 species: Archae - 0; Bacteria - 23; Metazoa
- 3754; Fungi - 379; Plants - 301; Viruses - 154; Other
Eukaryotes - 885 (source: NCBI BLink).		 0.64 0.29 -0.3
73 AT2G02800 protein kinase 2B protein kinase 2B, kinase 2 0.64 0.32 -0.33
74 AT3G46500 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.64 0.32 -0.32
75 AT5G07710 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 0.64 0.31 -0.33
76 AT2G21880 RAB GTPase homolog 7A RAB GTPase homolog 7A, ARABIDOPSIS
RAB GTPASE HOMOLOG G2, RAB GTPase
homolog 7A		 0.64 0.31 -0.35
77 AT2G21080 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
vacuole; EXPRESSED IN: 15 plant structures; EXPRESSED
DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3537 (InterPro:IPR021924);
BEST Arabidopsis thaliana protein match is: Protein of
unknown function (DUF3537) (TAIR:AT3G20300.1); Has 141
Blast hits to 141 proteins in 16 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 140; Viruses
- 0; Other Eukaryotes - 1 (source: NCBI BLink).		 0.64 0.33 -0.29
78 AT5G12330 Lateral root primordium (LRP) protein-related LATERAL ROOT PRIMORDIUM 1 -0.64 0.3 -0.3
79 AT4G27260 Auxin-responsive GH3 family protein GH3.5, WES1 -0.64 0.29 -0.32
80 AT5G47940 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.63 0.33 -0.3
81 AT5G03860 malate synthase malate synthase -0.63 0.32 -0.33
82 AT4G16240 unknown protein; Has 17010 Blast hits to 4557 proteins in
509 species: Archae - 32; Bacteria - 2889; Metazoa - 6537;
Fungi - 648; Plants - 4769; Viruses - 447; Other Eukaryotes
- 1688 (source: NCBI BLink).		 -0.63 0.33 -0.32
83 AT5G11090 serine-rich protein-related -0.63 0.31 -0.28
84 AT1G62810 Copper amine oxidase family protein -0.62 0.28 -0.31
85 AT2G43420 3-beta hydroxysteroid dehydrogenase/isomerase family
protein		 -0.62 0.31 -0.31
86 AT1G61820 beta glucosidase 46 beta glucosidase 46 -0.62 0.31 -0.29
87 AT2G38370 Plant protein of unknown function (DUF827) -0.62 0.32 -0.32
88 AT2G46750 D-arabinono-1,4-lactone oxidase family protein -0.62 0.31 -0.31
89 AT5G61060 histone deacetylase 5 ATHDA5, histone deacetylase 5,
HDA5		 -0.62 0.31 -0.32
90 AT3G24400 pseudogene, protein kinase family, contains Pfam PF00069:
Protein kinase domain; blastp match of 72% identity and
1.7e-148 P-value to GP|13397640|emb|CAC34703.1||AX088876
unnamed protein product {Brassica napus}		 proline-rich extensin-like
receptor kinase 2, proline-rich
extensin-like receptor kinase 2		 -0.61 0.31 -0.3
91 AT1G28360 ERF domain protein 12 ERF DOMAIN PROTEIN 12, ERF domain
protein 12		 -0.61 0.32 -0.33
92 AT5G48650 Nuclear transport factor 2 (NTF2) family protein with RNA
binding (RRM-RBD-RNP motifs) domain		 -0.61 0.32 -0.3
93 AT3G62100 indole-3-acetic acid inducible 30 indole-3-acetic acid inducible 30 -0.6 0.3 -0.32
94 AT5G60760 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.6 0.33 -0.3
95 AT3G21090 ABC-2 type transporter family protein ATP-binding cassette G15 -0.6 0.32 -0.32
96 AT1G20160 Subtilisin-like serine endopeptidase family protein ATSBT5.2 -0.6 0.32 -0.33
97 AT2G18490 C2H2-like zinc finger protein -0.59 0.33 -0.32
98 AT3G11050 ferritin 2 ferritin 2, ferritin 2 -0.59 0.31 -0.33
99 AT5G25900 GA requiring 3 ARABIDOPSIS THALIANA ENT-KAURENE
OXIDASE 1, CYTOCHROME P450 701 A3,
GA requiring 3		 -0.59 0.31 -0.31
100 AT1G19540 NmrA-like negative transcriptional regulator family protein -0.59 0.31 -0.33
101 AT2G02850 plantacyanin plantacyanin -0.58 0.29 -0.32
102 AT5G47750 D6 protein kinase like 2 D6 protein kinase like 2, PK5 -0.58 0.31 -0.32
103 AT1G32120 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: membrane; EXPRESSED
IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, C
globular stage, F mature embryo stage, petal
differentiation and expansion stage, E expanded cotyledon
stage; CONTAINS InterPro DOMAIN/s: Aminotransferase-like,
plant mobile domain (InterPro:IPR019557), Protein of
unknown function DUF716 (InterPro:IPR006904); BEST
Arabidopsis thaliana protein match is:
Aminotransferase-like, plant mobile domain family protein
(TAIR:AT1G51538.1); Has 16736 Blast hits to 9656 proteins
in 576 species: Archae - 4; Bacteria - 1182; Metazoa -
7098; Fungi - 2631; Plants - 1178; Viruses - 174; Other
Eukaryotes - 4469 (source: NCBI BLink).		 -0.58 0.3 -0.31