AT3G22104 : -
Query Information
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AGICode AT3G22104
Description Phototropic-responsive NPH3 family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G22104 Phototropic-responsive NPH3 family protein 1 0.32 -0.33
2 AT3G26470 Powdery mildew resistance protein, RPW8 domain -0.9 0.32 -0.33
3 AT3G16520 UDP-glucosyl transferase 88A1 UDP-glucosyl transferase 88A1 0.84 0.33 -0.31
4 AT2G47000 ATP binding cassette subfamily B4 ATP-binding cassette B4,
ARABIDOPSIS P-GLYCOPROTEIN 4,
MULTIDRUG RESISTANCE 4,
P-GLYCOPROTEIN 4		 -0.83 0.3 -0.31
5 AT2G31390 pfkB-like carbohydrate kinase family protein -0.83 0.3 -0.3
6 AT2G45600 alpha/beta-Hydrolases superfamily protein 0.83 0.29 -0.31
7 AT5G12880 proline-rich family protein -0.82 0.29 -0.3
8 AT4G37560 Acetamidase/Formamidase family protein 0.82 0.32 -0.32
9 AT1G50280 Phototropic-responsive NPH3 family protein 0.81 0.33 -0.32
10 AT1G09460 Carbohydrate-binding X8 domain superfamily protein -0.81 0.32 -0.29
11 AT1G11300 protein serine/threonine kinases;protein kinases;ATP
binding;sugar binding;kinases;carbohydrate binding		 0.81 0.31 -0.31
12 AT5G50760 SAUR-like auxin-responsive protein family -0.81 0.31 -0.31
13 AT2G45350 Pentatricopeptide repeat (PPR) superfamily protein CHLORORESPIRATORY REDUCTION 4 0.8 0.3 -0.31
14 AT2G45590 Protein kinase superfamily protein 0.8 0.31 -0.33
15 AT1G54820 Protein kinase superfamily protein 0.8 0.32 -0.3
16 AT1G03160 FZO-like FZO-like 0.8 0.33 -0.33
17 AT3G58010 plastoglobulin 34kD plastoglobulin 34kD 0.8 0.31 -0.32
18 AT4G37550 Acetamidase/Formamidase family protein 0.79 0.32 -0.32
19 AT5G46690 beta HLH protein 71 beta HLH protein 71 0.79 0.31 -0.33
20 AT5G07240 IQ-domain 24 IQ-domain 24 0.79 0.32 -0.33
21 AT4G10000 Thioredoxin family protein 0.78 0.32 -0.31
22 AT1G11580 methylesterase PCR A ATPMEPCRA, methylesterase PCR A -0.78 0.31 -0.33
23 AT1G20650 Protein kinase superfamily protein ALTERED SEED GERMINATION 5 0.78 0.31 -0.3
24 AT1G02800 cellulase 2 cellulase 2, CEL2, cellulase 2 0.77 0.3 -0.32
25 AT5G11060 KNOTTED1-like homeobox gene 4 KNOTTED1-like homeobox gene 4 0.77 0.33 -0.31
26 AT2G42190 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G57930.2); Has 1381 Blast hits
to 1230 proteins in 175 species: Archae - 3; Bacteria - 25;
Metazoa - 672; Fungi - 135; Plants - 127; Viruses - 30;
Other Eukaryotes - 389 (source: NCBI BLink).		 0.77 0.3 -0.31
27 AT1G49430 long-chain acyl-CoA synthetase 2 long-chain acyl-CoA synthetase 2,
LATERAL ROOT DEVELOPMENT 2		 0.77 0.33 -0.31
28 AT4G27800 thylakoid-associated phosphatase 38 PROTEIN PHOSPHATASE 1,
thylakoid-associated phosphatase
38		 0.77 0.3 -0.32
29 AT5G07800 Flavin-binding monooxygenase family protein 0.77 0.31 -0.32
30 AT5G17330 glutamate decarboxylase glutamate decarboxylase, GLUTAMATE
DECARBOXYLASE 1		 -0.77 0.31 -0.31
31 AT2G29530 Tim10/DDP family zinc finger protein TIM10 -0.76 0.31 -0.31
32 AT1G60590 Pectin lyase-like superfamily protein 0.76 0.31 -0.32
33 AT5G62080 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 0.76 0.33 -0.3
34 AT4G23890 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast; EXPRESSED IN:
22 plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF3252 (InterPro:IPR021659); Has 287 Blast hits to 287
proteins in 81 species: Archae - 0; Bacteria - 118; Metazoa
- 12; Fungi - 6; Plants - 40; Viruses - 0; Other Eukaryotes
- 111 (source: NCBI BLink).		 CHLORORESPIRATORY REDUCTION 31,
NADH dehydrogenase-like complex S		 0.76 0.35 -0.33
35 AT3G20000 translocase of the outer mitochondrial membrane 40 translocase of the outer
mitochondrial membrane 40		 -0.76 0.31 -0.31
36 AT3G01280 voltage dependent anion channel 1 ARABIDOPSIS THALIANA VOLTAGE
DEPENDENT ANION CHANNEL 1, voltage
dependent anion channel 1		 -0.76 0.3 -0.33
37 AT1G09300 Metallopeptidase M24 family protein -0.76 0.31 -0.34
38 AT2G37300 unknown protein; Has 93 Blast hits to 62 proteins in 29
species: Archae - 0; Bacteria - 6; Metazoa - 13; Fungi -
19; Plants - 25; Viruses - 0; Other Eukaryotes - 30
(source: NCBI BLink).		 ATP-binding cassette I16 0.76 0.28 -0.3
39 AT5G14370 CCT motif family protein 0.76 0.3 -0.29
40 AT2G43535 Scorpion toxin-like knottin superfamily protein -0.76 0.31 -0.32
41 AT2G46740 D-arabinono-1,4-lactone oxidase family protein -0.75 0.32 -0.33
42 AT4G12080 AT-hook motif nuclear-localized protein 1 AT-hook motif nuclear-localized
protein 1, ATAHL1		 -0.75 0.34 -0.3
43 AT4G12550 Auxin-Induced in Root cultures 1 Auxin-Induced in Root cultures 1 -0.75 0.3 -0.33
44 AT5G67230 Nucleotide-diphospho-sugar transferases superfamily protein IRREGULAR XYLEM 14 Homolog,
IRREGULAR XYLEM 14-LIKE		 0.75 0.31 -0.34
45 AT3G17910 Surfeit locus 1 cytochrome c oxidase biogenesis protein EMBRYO DEFECTIVE 3121, SURFEIT 1 -0.75 0.31 -0.32
46 AT1G03310 debranching enzyme 1 ARABIDOPSIS THALIANA ISOAMYLASE 2,
BRANCHING ENZYME 2, debranching
enzyme 1, ISA2		 0.75 0.33 -0.31
47 AT2G43010 phytochrome interacting factor 4 AtPIF4, phytochrome interacting
factor 4, SRL2		 0.75 0.32 -0.32
48 AT1G65900 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 13 growth stages; Has 306 Blast hits to
306 proteins in 119 species: Archae - 19; Bacteria - 238;
Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other
Eukaryotes - 15 (source: NCBI BLink).		 0.75 0.32 -0.33
49 AT1G17180 glutathione S-transferase TAU 25 glutathione S-transferase TAU 25,
glutathione S-transferase TAU 25		 -0.74 0.31 -0.31
50 AT2G38540 lipid transfer protein 1 ARABIDOPSIS THALIANA LIPID
TRANSFER PROTEIN 1, lipid transfer
protein 1, LIPID TRANSFER PROTEIN
1		 0.74 0.31 -0.33
51 AT3G58710 WRKY DNA-binding protein 69 RABIDOPSIS THALIANA WRKY
DNA-BINDING PROTEIN 69, WRKY
DNA-binding protein 69		 -0.74 0.3 -0.31
52 AT2G46380 Protein of unknown function (DUF3133) 0.74 0.33 -0.31
53 AT5G04490 vitamin E pathway gene 5 vitamin E pathway gene 5 0.74 0.32 -0.3
54 AT5G58140 phototropin 2 NON PHOTOTROPIC HYPOCOTYL 1-LIKE,
phototropin 2		 0.74 0.32 -0.32
55 AT4G21960 Peroxidase superfamily protein PRXR1 0.74 0.3 -0.33
56 AT4G37910 mitochondrial heat shock protein 70-1 mitochondrial heat shock protein
70-1		 -0.74 0.3 -0.32
57 AT2G23170 Auxin-responsive GH3 family protein GH3.3 -0.74 0.32 -0.34
58 AT1G75820 Leucine-rich receptor-like protein kinase family protein ATCLV1, CLAVATA 1, FASCIATA 3,
FLOWER DEVELOPMENT 5		 0.74 0.33 -0.32
59 AT1G19330 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G75060.1); Has 145 Blast hits
to 145 proteins in 43 species: Archae - 0; Bacteria - 0;
Metazoa - 40; Fungi - 0; Plants - 104; Viruses - 0; Other
Eukaryotes - 1 (source: NCBI BLink).		 0.74 0.32 -0.32
60 AT3G46590 TRF-like 1 ATTRP2, TRF-like 1, TRP2 0.74 0.33 -0.34
61 AT3G18490 Eukaryotic aspartyl protease family protein 0.74 0.33 -0.33
62 AT4G09900 methyl esterase 12 ARABIDOPSIS THALIANA METHYL
ESTERASE 12, methyl esterase 12		 0.74 0.34 -0.32
63 AT4G08920 cryptochrome 1 ATCRY1, BLUE LIGHT UNINHIBITED 1,
cryptochrome 1, ELONGATED
HYPOCOTYL 4, OUT OF PHASE 2		 0.74 0.33 -0.31
64 AT4G00490 beta-amylase 2 beta-amylase 2, BETA-AMYLASE 9 0.73 0.29 -0.32
65 AT5G54630 zinc finger protein-related 0.73 0.3 -0.31
66 AT5G10830 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.73 0.33 -0.32
67 AT1G53450 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G14830.2); Has 71 Blast hits
to 71 proteins in 12 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.73 0.35 -0.32
68 AT2G04570 GDSL-like Lipase/Acylhydrolase superfamily protein 0.73 0.32 -0.3
69 AT4G31810 ATP-dependent caseinolytic (Clp) protease/crotonase family
protein		 -0.73 0.3 -0.32
70 AT5G55450 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 0.73 0.31 -0.31
71 AT2G29630 thiaminC PYRIMIDINE REQUIRING, thiaminC 0.73 0.33 -0.3
72 AT3G53480 pleiotropic drug resistance 9 ATP-binding cassette G37,
PLEIOTROPIC DRUG RESISTANCE 9,
pleiotropic drug resistance 9,
polar auxin transport inhibitor
sensitive 1		 -0.73 0.3 -0.32
73 AT1G17840 white-brown complex homolog protein 11 ATP-binding cassette G11,
AtABCG11, ARABIDOPSIS THALIANA
WHITE-BROWN COMPLEX HOMOLOG
PROTEIN 11, CUTICULAR DEFECT AND
ORGAN FUSION 1, DESPERADO,
white-brown complex homolog
protein 11		 0.72 0.3 -0.32
74 AT3G29320 Glycosyl transferase, family 35 alpha-glucan phosphorylase 1 0.72 0.32 -0.31
75 AT5G26860 lon protease 1 lon protease 1, LON_ARA_ARA -0.72 0.33 -0.34
76 AT3G19720 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 ACCUMULATION AND REPLICATION OF
CHLOROPLAST 5, Dynamin related
protein 5B		 0.72 0.31 -0.32
77 AT5G02240 NAD(P)-binding Rossmann-fold superfamily protein 0.72 0.31 -0.33
78 AT5G66550 Maf-like protein 0.72 0.34 -0.3
79 AT1G74520 HVA22 homologue A HVA22 homologue A, HVA22 homologue
A		 0.72 0.33 -0.32
80 AT1G79410 organic cation/carnitine transporter5 organic cation/carnitine
transporter5, organic
cation/carnitine transporter5		 -0.72 0.31 -0.33
81 AT1G64750 deletion of SUV3 suppressor 1(I) deletion of SUV3 suppressor 1(I),
deletion of SUV3 suppressor 1(I)		 -0.72 0.33 -0.33
82 AT4G02930 GTP binding Elongation factor Tu family protein -0.72 0.31 -0.31
83 AT1G12845 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 8 Blast hits to 8
proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.72 0.31 -0.33
84 AT1G14620 decoy DECOY -0.71 0.34 -0.32
85 AT1G29280 WRKY DNA-binding protein 65 WRKY DNA-BINDING PROTEIN 65, WRKY
DNA-binding protein 65		 -0.71 0.3 -0.31
86 AT1G47640 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF2053, membrane
(InterPro:IPR019164); Has 204 Blast hits to 204 proteins in
84 species: Archae - 0; Bacteria - 0; Metazoa - 127; Fungi
- 0; Plants - 50; Viruses - 0; Other Eukaryotes - 27
(source: NCBI BLink).		 -0.71 0.31 -0.31
87 AT4G01660 ABC transporter 1 ABC transporter 1, ABC transporter
1, ATATH10		 -0.71 0.32 -0.3
88 AT3G03050 cellulose synthase-like D3 CELLULOSE SYNTHASE LIKE D3,
cellulose synthase-like D3, KOJAK,
ROOT HAIR DEFECTIVE 7		 -0.71 0.29 -0.32
89 AT4G23690 Disease resistance-responsive (dirigent-like protein)
family protein		 -0.71 0.32 -0.33
90 AT1G65610 Six-hairpin glycosidases superfamily protein ARABIDOPSIS THALIANA GLYCOSYL
HYDROLASE 9A2, KORRIGAN 2		 -0.71 0.33 -0.32
91 AT5G59520 ZRT/IRT-like protein 2 ZRT/IRT-like protein 2 -0.7 0.29 -0.31
92 AT1G06890 nodulin MtN21 /EamA-like transporter family protein -0.7 0.33 -0.32
93 AT1G09090 respiratory burst oxidase homolog B respiratory burst oxidase homolog
B, ATRBOHB-BETA, respiratory burst
oxidase homolog B		 -0.7 0.32 -0.33
94 AT1G24095 Putative thiol-disulphide oxidoreductase DCC -0.7 0.32 -0.32
95 AT1G24180 Thiamin diphosphate-binding fold (THDP-binding) superfamily
protein		 IAA-CONJUGATE-RESISTANT 4 -0.7 0.32 -0.34
96 AT5G61880 Protein Transporter, Pam16 -0.7 0.33 -0.32
97 AT1G66580 senescence associated gene 24 ribosomal protein L10 C,
senescence associated gene 24		 -0.7 0.33 -0.34
98 AT3G18760 Translation elongation factor EF1B/ribosomal protein S6
family protein		 -0.7 0.31 -0.3
99 AT1G74240 Mitochondrial substrate carrier family protein -0.7 0.31 -0.3
100 AT3G16350 Homeodomain-like superfamily protein -0.7 0.32 -0.3
101 AT1G77330 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.7 0.32 -0.33
102 AT3G21710 unknown protein; Has 42 Blast hits to 42 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.7 0.31 -0.29
103 AT2G43610 Chitinase family protein -0.7 0.31 -0.3
104 AT4G19460 UDP-Glycosyltransferase superfamily protein -0.69 0.31 -0.28
105 AT5G03290 isocitrate dehydrogenase V isocitrate dehydrogenase V -0.69 0.29 -0.31
106 AT2G32920 PDI-like 2-3 ARABIDOPSIS THALIANA PROTEIN
DISULFIDE ISOMERASE 9, PDI-like
2-3, PROTEIN DISULFIDE ISOMERASE
9, PDI-like 2-3		 -0.69 0.31 -0.31
107 AT5G13780 Acyl-CoA N-acyltransferases (NAT) superfamily protein -0.69 0.32 -0.32
108 AT5G22890 C2H2 and C2HC zinc fingers superfamily protein -0.69 0.34 -0.33
109 AT2G27510 ferredoxin 3 ferredoxin 3, ferredoxin 3 -0.69 0.35 -0.31
110 AT1G08220 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
mitochondrial proton-transporting ATP synthase complex
assembly; LOCATED IN: mitochondrial inner membrane;
EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7
growth stages; CONTAINS InterPro DOMAIN/s: ATPase assembly
factor ATP10, mitochondria (InterPro:IPR007849); Has 168
Blast hits to 168 proteins in 86 species: Archae - 6;
Bacteria - 0; Metazoa - 2; Fungi - 107; Plants - 30;
Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).		 -0.69 0.31 -0.3
111 AT5G60640 PDI-like 1-4 ARABIDOPSIS THALIANA PROTEIN
DISULFIDE ISOMERASE 2, PDI-like
1-4, PROTEIN DISULFIDE ISOMERASE
2, PDI-like 1-4		 -0.69 0.31 -0.31
112 AT1G29310 SecY protein transport family protein -0.69 0.29 -0.32
113 AT5G27395 Mitochondrial inner membrane translocase complex, subunit
Tim44-related protein		 -0.69 0.3 -0.31
114 AT2G35790 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF1301 (InterPro:IPR009724); Has 116
Blast hits to 116 proteins in 49 species: Archae - 0;
Bacteria - 0; Metazoa - 53; Fungi - 6; Plants - 49; Viruses
- 0; Other Eukaryotes - 8 (source: NCBI BLink).		 -0.68 0.3 -0.34
115 AT1G49390 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.68 0.32 -0.33
116 AT4G35850 Pentatricopeptide repeat (PPR) superfamily protein -0.68 0.31 -0.31
117 AT1G67030 zinc finger protein 6 zinc finger protein 6 -0.68 0.31 -0.3
118 AT3G14610 cytochrome P450, family 72, subfamily A, polypeptide 7 cytochrome P450, family 72,
subfamily A, polypeptide 7		 -0.68 0.32 -0.3
119 AT1G15210 pleiotropic drug resistance 7 ATP-binding cassette G35,
PLEIOTROPIC DRUG RESISTANCE 7,
pleiotropic drug resistance 7		 -0.68 0.32 -0.32
120 AT5G37740 Calcium-dependent lipid-binding (CaLB domain) family
protein		 -0.68 0.31 -0.33
121 AT5G15090 voltage dependent anion channel 3 ARABIDOPSIS THALIANA VOLTAGE
DEPENDENT ANION CHANNEL 3, voltage
dependent anion channel 3		 -0.67 0.34 -0.34
122 AT3G25730 ethylene response DNA binding factor 3 ethylene response DNA binding
factor 3		 -0.67 0.33 -0.31
123 AT2G03120 signal peptide peptidase signal peptide peptidase, signal
peptide peptidase		 -0.67 0.31 -0.31
124 AT5G40650 succinate dehydrogenase 2-2 succinate dehydrogenase 2-2 -0.67 0.33 -0.33
125 AT1G05260 Peroxidase superfamily protein RARE COLD INDUCIBLE GENE 3, RCI3A -0.67 0.31 -0.3
126 AT2G35120 Single hybrid motif superfamily protein -0.67 0.32 -0.33
127 AT3G27190 uridine kinase-like 2 uridine kinase-like 2 -0.67 0.29 -0.34
128 AT5G40510 Sucrase/ferredoxin-like family protein -0.67 0.33 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
129 C0263 UMP - UMP pyrimidine salvage pathway,
dolichyl-diphosphooligosaccharide biosynthesis,
lipid IVA biosynthesis,
uridine-5'-phosphate biosynthesis,
pyrimidine ribonucleotides interconversion 		0.85 0.43 -0.42 C0263
130 C0133 Kaempferol-3,7-O-α-dirhamnopyranoside Kaempferol-3,7-O-α-L-dirhamnopyranoside Kaempferol-3-rhamnoside-7-rhamnoside kaempferol glucoside biosynthesis (Arabidopsis) 0.85 0.47 -0.44 C0133