AT2G39240 : -
Query Information
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AGICode AT2G39240
Description RNA polymerase I specific transcription initiation factor RRN3 protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT2G39240 RNA polymerase I specific transcription initiation factor
RRN3 protein		 1 0.3 -0.3
2 AT4G03040 BEST Arabidopsis thaliana protein match is: Polynucleotidyl
transferase, ribonuclease H-like superfamily protein
(TAIR:AT5G33330.1); Has 18 Blast hits to 18 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.79 0.32 -0.3
3 AT4G20470 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.74 0.33 -0.32
4 AT5G04880 pseudogene of ABC transporter family protein -0.73 0.36 -0.33
5 AT1G56160 myb domain protein 72 ARABIDOPSIS THALIANA MYB DOMAIN
PROTEIN 72, myb domain protein 72		 0.73 0.3 -0.31
6 AT2G16040 hAT dimerisation domain-containing protein /
transposase-related		 0.72 0.31 -0.3
7 AT2G45200 golgi snare 12 ATGOS12, golgi snare 12 0.72 0.33 -0.32
8 AT4G08710 transposable element gene 0.72 0.29 -0.3
9 AT3G43880 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G07526.3); Has 32 Blast hits
to 32 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.71 0.31 -0.3
10 AT3G54270 sucrose-6F-phosphate phosphohydrolase family protein -0.71 0.3 -0.31
11 AT2G18340 late embryogenesis abundant domain-containing protein / LEA
domain-containing protein		 0.71 0.32 -0.33
12 AT4G10220 Protein of Unknown Function (DUF239) -0.71 0.3 -0.31
13 AT3G49510 F-box family protein 0.7 0.3 -0.32
14 AT4G07790 transposable element gene 0.7 0.32 -0.33
15 AT5G08190 nuclear factor Y, subunit B12 nuclear factor Y, subunit B12 0.7 0.29 -0.33
16 AT1G10010 amino acid permease 8 amino acid permease 8, ATAAP8 0.7 0.31 -0.33
17 AT4G17260 Lactate/malate dehydrogenase family protein 0.7 0.33 -0.31
18 AT3G08880 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G01570.1); Has 177 Blast hits
to 175 proteins in 60 species: Archae - 4; Bacteria - 33;
Metazoa - 18; Fungi - 11; Plants - 59; Viruses - 0; Other
Eukaryotes - 52 (source: NCBI BLink).		 0.69 0.34 -0.32
19 AT1G22290 14-3-3 family protein -0.69 0.32 -0.31
20 AT2G05000 transposable element gene -0.69 0.3 -0.31
21 AT4G10370 Cysteine/Histidine-rich C1 domain family protein 0.69 0.31 -0.32
22 AT3G56700 fatty acid reductase 6 AtFAR6, fatty acid reductase 6 0.68 0.3 -0.32
23 AT1G35995 transposable element gene 0.68 0.34 -0.32
24 AT4G05060 PapD-like superfamily protein 0.68 0.32 -0.32
25 AT1G68240 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 -0.68 0.34 -0.31
26 AT2G37140 Terpenoid synthases superfamily protein 0.68 0.32 -0.33
27 AT5G24940 Protein phosphatase 2C family protein 0.67 0.33 -0.34
28 AT2G11590 transposable element gene -0.67 0.3 -0.31
29 AT1G70180 Sterile alpha motif (SAM) domain-containing protein -0.67 0.31 -0.33
30 AT4G21500 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G05018.1); Has 20 Blast
hits to 20 proteins in 8 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other
Eukaryotes - 3 (source: NCBI BLink).		 0.67 0.3 -0.34
31 AT4G25350 EXS (ERD1/XPR1/SYG1) family protein SHORT HYPOCOTYL UNDER BLUE1 -0.67 0.31 -0.31
32 AT3G57970 Emsy N Terminus (ENT)/ plant Tudor-like domains-containing
protein		 0.67 0.31 -0.31
33 AT4G10850 Nodulin MtN3 family protein AtSWEET7, SWEET7 -0.67 0.34 -0.33
34 AT2G06820 transposable element gene -0.66 0.29 -0.34
35 AT2G13940 transposable element gene -0.66 0.32 -0.31
36 AT4G03760 transposable element gene 0.66 0.33 -0.31
37 AT1G43140 Cullin family protein -0.66 0.33 -0.33
38 AT3G10890 Glycosyl hydrolase superfamily protein 0.66 0.3 -0.31
39 AT1G33320 Pyridoxal phosphate (PLP)-dependent transferases
superfamily protein		 -0.66 0.32 -0.29
40 AT1G58300 heme oxygenase 4 heme oxygenase 4 -0.66 0.3 -0.29
41 AT4G18420 transposable element gene -0.66 0.33 -0.33
42 AT5G17480 pollen calcium-binding protein 1 pollen calcium-binding protein 1,
pollen calcium-binding protein 1		 0.65 0.31 -0.31
43 AT2G33240 myosin XI D MYOSIN XI D, myosin XI D 0.65 0.33 -0.32
44 AT2G23270 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: stem, sperm cell, root,
stamen; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT4G37290.1); Has 36 Blast hits to 35 proteins in 6
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.65 0.31 -0.32
45 AT4G04300 transposable element gene 0.65 0.29 -0.34
46 AT2G27940 RING/U-box superfamily protein -0.65 0.31 -0.33
47 AT3G10590 Duplicated homeodomain-like superfamily protein 0.65 0.32 -0.3
48 AT4G32780 phosphoinositide binding -0.65 0.32 -0.33
49 AT3G19510 Homeodomain-like protein with RING/FYVE/PHD-type zinc
finger domain		 HAT3.1 -0.65 0.32 -0.31
50 AT4G18920 Protein of unknown function (DUF1264) 0.65 0.32 -0.31
51 AT3G56610 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: embryo, sperm cell,
sepal, pedicel, synergid; EXPRESSED DURING: 4 anthesis, C
globular stage; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF784, Arabidopsis thaliana
(InterPro:IPR008502); Has 5 Blast hits to 5 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.65 0.31 -0.31
52 AT4G05280 transposable element gene -0.65 0.31 -0.32
53 AT4G15200 formin 3 formin 3, formin 3 -0.65 0.31 -0.3
54 AT1G61430 S-locus lectin protein kinase family protein 0.65 0.33 -0.31
55 AT3G49270 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING:
4 anthesis, C globular stage, petal differentiation and
expansion stage; BEST Arabidopsis thaliana protein match
is: proline-rich family protein (TAIR:AT3G49300.1); Has 63
Blast hits to 43 proteins in 11 species: Archae - 0;
Bacteria - 0; Metazoa - 28; Fungi - 0; Plants - 31; Viruses
- 0; Other Eukaryotes - 4 (source: NCBI BLink).		 0.65 0.33 -0.3
56 AT1G26760 SET domain protein 35 ATXR1, SET domain protein 35 -0.65 0.33 -0.31
57 AT3G43130 transposable element gene -0.65 0.32 -0.32
58 AT1G46696 Protein of unknown function, DUF601 0.65 0.29 -0.31
59 AT5G37620 Cysteine/Histidine-rich C1 domain family protein -0.64 0.31 -0.32
60 AT5G51260 HAD superfamily, subfamily IIIB acid phosphatase 0.64 0.32 -0.34
61 AT2G07560 H(+)-ATPase 6 H(+)-ATPase 6, H(+)-ATPase 6 0.64 0.29 -0.32
62 AT4G20060 ARM repeat superfamily protein EMBRYO DEFECTIVE 1895 -0.64 0.32 -0.32
63 AT5G12460 Protein of unknown function (DUF604) -0.64 0.32 -0.32
64 AT2G44810 alpha/beta-Hydrolases superfamily protein DEFECTIVE ANTHER DEHISCENCE 1 -0.64 0.3 -0.32
65 AT1G51300 alpha/beta-Hydrolases superfamily protein -0.64 0.31 -0.32
66 AT1G25240 ENTH/VHS/GAT family protein 0.64 0.3 -0.32
67 AT2G30925 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.64 0.31 -0.3
68 AT2G40210 AGAMOUS-like 48 AGAMOUS-like 48 -0.64 0.32 -0.32
69 AT1G05610 ADP-glucose pyrophosphorylase small subunit 2 ADP-glucose pyrophosphorylase
small subunit 2		 0.64 0.3 -0.31
70 AT1G09550 Pectinacetylesterase family protein -0.63 0.33 -0.32
71 AT3G52310 ABC-2 type transporter family protein ATP-binding cassette G27 -0.63 0.3 -0.31
72 AT5G58180 Synaptobrevin family protein ATYKT62, YKT62 0.63 0.33 -0.3
73 AT1G64450 Glycine-rich protein family -0.63 0.33 -0.33
74 AT2G15610 Protein of unknown function (DUF1685) -0.63 0.31 -0.3
75 AT3G48010 cyclic nucleotide-gated channel 16 CYCLIC NUCLEOTIDE-GATED CHANNEL
16, cyclic nucleotide-gated
channel 16		 -0.63 0.31 -0.33
76 AT1G38340 transposable element gene -0.63 0.31 -0.33
77 AT5G61650 CYCLIN P4;2 CYCP4, CYCLIN P4;2 0.63 0.28 -0.3
78 AT1G80870 Protein kinase superfamily protein -0.63 0.31 -0.33
79 AT1G33900 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.63 0.33 -0.31
80 AT5G35420 transposable element gene -0.62 0.3 -0.32
81 AT2G06220 transposable element gene 0.62 0.33 -0.33
82 AT1G04670 unknown protein; Has 40 Blast hits to 40 proteins in 14
species: Archae - 2; Bacteria - 5; Metazoa - 1; Fungi - 2;
Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.62 0.32 -0.31
83 AT4G35510 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G17540.3); Has 182 Blast hits
to 179 proteins in 73 species: Archae - 0; Bacteria - 87;
Metazoa - 17; Fungi - 9; Plants - 50; Viruses - 0; Other
Eukaryotes - 19 (source: NCBI BLink).		 0.62 0.31 -0.31
84 AT4G03940 unknown protein; Has 8 Blast hits to 8 proteins in 3
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 6; Viruses - 0; Other Eukaryotes - 2 (source: NCBI
BLink).		 -0.62 0.3 -0.33
85 AT4G35370 Transducin/WD40 repeat-like superfamily protein -0.62 0.32 -0.31
86 ATMG00320 hypothetical protein ORF127 0.62 0.32 -0.34
87 AT1G51290 F-box and associated interaction domains-containing protein -0.62 0.32 -0.3
88 AT4G19470 Leucine-rich repeat (LRR) family protein -0.62 0.33 -0.31
89 AT3G15930 Pentatricopeptide repeat (PPR) superfamily protein -0.62 0.33 -0.3
90 AT1G47655 Dof-type zinc finger DNA-binding family protein 0.62 0.31 -0.31
91 AT1G23570 Domain of unknown function (DUF220) 0.62 0.32 -0.31
92 ATMG00820 Reverse transcriptase (RNA-dependent DNA polymerase) ORF170 -0.62 0.32 -0.32
93 AT5G34830 unknown protein; Has 19 Blast hits to 19 proteins in 6
species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0;
Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.62 0.31 -0.3
94 AT1G45545 Plant protein of unknown function (DUF827) -0.62 0.3 -0.3
95 AT3G12440 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 -0.61 0.33 -0.32
96 AT2G32360 Ubiquitin-like superfamily protein -0.61 0.33 -0.31
97 AT5G58850 myb domain protein 119 MYB DOMAIN PROTEIN 119, myb domain
protein 119		 0.61 0.34 -0.32
98 AT5G26270 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.61 0.32 -0.31
99 AT1G20750 RAD3-like DNA-binding helicase protein 0.61 0.32 -0.32
100 AT4G20220 Reverse transcriptase (RNA-dependent DNA polymerase) -0.61 0.33 -0.31
101 AT2G24370 Protein kinase protein with adenine nucleotide alpha
hydrolases-like domain		 -0.61 0.29 -0.31
102 AT1G33870 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.61 0.3 -0.33
103 AT4G12530 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 0.61 0.31 -0.33
104 AT5G17150 Cystatin/monellin superfamily protein -0.61 0.31 -0.3
105 AT5G05260 cytochrome p450 79a2 cytochrome p450 79a2 -0.61 0.31 -0.3
106 AT1G50160 BEST Arabidopsis thaliana protein match is: Polynucleotidyl
transferase, ribonuclease H-like superfamily protein
(TAIR:AT2G04420.1); Has 34 Blast hits to 34 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.61 0.36 -0.31
107 AT5G25290 F-box family protein with a domain of unknown function
(DUF295)		 -0.61 0.34 -0.3
108 AT4G02960 transposable element gene retro element 2, retro element 2 0.61 0.31 -0.33
109 AT3G11240 arginine-tRNA protein transferase 2 ATATE2, arginine-tRNA protein
transferase 2		 -0.61 0.32 -0.31
110 AT3G01380 transferases;sulfuric ester
hydrolases;catalytics;transferases		 -0.61 0.33 -0.31
111 AT5G18220 O-Glycosyl hydrolases family 17 protein 0.61 0.3 -0.32
112 AT4G11590 F-box associated ubiquitination effector family protein -0.6 0.33 -0.31
113 AT2G40680 transposable element gene -0.6 0.31 -0.34
114 AT3G01580 Tetratricopeptide repeat (TPR)-like superfamily protein 0.6 0.31 -0.32
115 AT3G12203 serine carboxypeptidase-like 17 serine carboxypeptidase-like 17 0.6 0.31 -0.31
116 AT3G24330 O-Glycosyl hydrolases family 17 protein -0.6 0.31 -0.31
117 AT2G15325 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 0.6 0.31 -0.29
118 AT5G27020 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.6 0.31 -0.3
119 AT1G68370 Chaperone DnaJ-domain superfamily protein ALTERED RESPONSE TO GRAVITY 1 0.6 0.32 -0.3
120 AT1G08080 alpha carbonic anhydrase 7 alpha carbonic anhydrase 7, A.
THALIANA ALPHA CARBONIC ANHYDRASE
7		 -0.6 0.31 -0.31
121 AT4G03810 transposable element gene 0.6 0.33 -0.32
122 AT4G19620 unknown protein; Has 4 Blast hits to 4 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.6 0.32 -0.33
123 AT3G20580 COBRA-like protein 10 precursor COBRA-like protein 10 precursor 0.6 0.32 -0.32
124 AT5G28040 DNA-binding storekeeper protein-related transcriptional
regulator		 0.6 0.33 -0.32
125 AT3G24340 chromatin remodeling 40 chromatin remodeling 40 -0.59 0.32 -0.33
126 AT1G34480 Cysteine/Histidine-rich C1 domain family protein -0.59 0.31 -0.35
127 AT2G23400 Undecaprenyl pyrophosphate synthetase family protein -0.59 0.32 -0.31
128 AT3G10240 F-box and associated interaction domains-containing protein -0.59 0.33 -0.31
129 AT1G50080 BEST Arabidopsis thaliana protein match is: RNA-directed
DNA polymerase (reverse transcriptase)-related family
protein (TAIR:AT1G60720.1); Has 42 Blast hits to 42
proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.59 0.32 -0.32
130 AT5G39380 Plant calmodulin-binding protein-related -0.59 0.33 -0.32
131 AT5G25960 Protein of Unknown Function (DUF239) -0.59 0.32 -0.29
132 AT1G34140 poly(A) binding protein 1 poly(A) binding protein 1 -0.59 0.33 -0.32
133 AT1G59950 NAD(P)-linked oxidoreductase superfamily protein -0.59 0.31 -0.29
134 AT4G07640 transposable element gene -0.59 0.33 -0.31
135 AT2G01390 Tetratricopeptide repeat (TPR)-like superfamily protein EMBRYO DEFECTIVE 3111 -0.59 0.32 -0.32