AT3G01210 : -
Query Information
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AGICode AT3G01210
Description RNA-binding (RRM/RBD/RNP motifs) family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G01210 RNA-binding (RRM/RBD/RNP motifs) family protein 1 0.34 -0.3
2 AT2G38460 iron regulated 1 ARABIDOPSIS THALIANA
IRON-REGULATED PROTEIN 1,
FERROPORTIN 1, iron regulated 1		 0.84 0.31 -0.32
3 AT2G30820 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G06660.1); Has 35333 Blast
hits to 34131 proteins in 2444 species: Archae - 798;
Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531;
Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).		 0.79 0.33 -0.3
4 AT5G56850 unknown protein; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to
34131 proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses -
0; Other Eukaryotes - 9610 (source: NCBI BLink).		 0.79 0.33 -0.32
5 AT1G20900 Predicted AT-hook DNA-binding family protein AT-hook motif nuclear-localized
protein 27, ESCAROLA, ORESARA 7		 -0.78 0.33 -0.31
6 AT3G13480 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G55475.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 0.78 0.32 -0.34
7 AT5G65685 UDP-Glycosyltransferase superfamily protein 0.78 0.31 -0.33
8 AT3G27925 DegP protease 1 DegP protease 1, DegP protease 1 0.77 0.32 -0.3
9 AT2G35790 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF1301 (InterPro:IPR009724); Has 116
Blast hits to 116 proteins in 49 species: Archae - 0;
Bacteria - 0; Metazoa - 53; Fungi - 6; Plants - 49; Viruses
- 0; Other Eukaryotes - 8 (source: NCBI BLink).		 -0.76 0.32 -0.29
10 AT2G34080 Cysteine proteinases superfamily protein -0.76 0.31 -0.3
11 AT4G27800 thylakoid-associated phosphatase 38 PROTEIN PHOSPHATASE 1,
thylakoid-associated phosphatase
38		 0.76 0.31 -0.31
12 AT2G37550 ARF-GAP domain 7 ARF-GAP domain 7, yeast pde1
suppressor 1		 -0.75 0.3 -0.3
13 AT4G13150 unknown protein; Has 83 Blast hits to 82 proteins in 37
species: Archae - 0; Bacteria - 51; Metazoa - 0; Fungi - 0;
Plants - 30; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 0.75 0.31 -0.31
14 AT1G67840 chloroplast sensor kinase chloroplast sensor kinase 0.75 0.31 -0.33
15 AT4G17360 Formyl transferase 0.75 0.3 -0.31
16 AT1G11480 eukaryotic translation initiation factor-related -0.74 0.34 -0.32
17 AT5G58140 phototropin 2 NON PHOTOTROPIC HYPOCOTYL 1-LIKE,
phototropin 2		 0.74 0.31 -0.32
18 AT1G62250 unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 23
plant structures; EXPRESSED DURING: 15 growth stages; Has
30 Blast hits to 30 proteins in 13 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.74 0.32 -0.29
19 AT2G31390 pfkB-like carbohydrate kinase family protein -0.74 0.3 -0.34
20 AT1G23310 glutamate:glyoxylate aminotransferase ALANINE-2-OXOGLUTARATE
AMINOTRANSFERASE 1,
GLUTAMATE:GLYOXYLATE
AMINOTRANSFERASE 1,
glutamate:glyoxylate
aminotransferase		 0.74 0.32 -0.31
21 AT1G19530 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation, anaerobic
respiration; LOCATED IN: cellular_component unknown;
EXPRESSED IN: leaf apex, inflorescence meristem, hypocotyl,
root, flower; EXPRESSED DURING: petal differentiation and
expansion stage; Has 47 Blast hits to 47 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.74 0.31 -0.29
22 AT3G01140 myb domain protein 106 myb domain protein 106, myb domain
protein 106, NOECK		 0.73 0.31 -0.31
23 AT2G23390 CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF482 (InterPro:IPR007434), Acyl-CoA N-acyltransferase
(InterPro:IPR016181); Has 2165 Blast hits to 2163 proteins
in 543 species: Archae - 0; Bacteria - 1044; Metazoa - 0;
Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes -
1088 (source: NCBI BLink).		 0.73 0.33 -0.31
24 AT5G48790 Domain of unknown function (DUF1995) 0.73 0.33 -0.32
25 AT2G30260 U2 small nuclear ribonucleoprotein B U2 small nuclear ribonucleoprotein
B		 -0.73 0.32 -0.29
26 AT4G24460 CRT (chloroquine-resistance transporter)-like transporter 2 CRT (chloroquine-resistance
transporter)-like transporter 2		 0.73 0.32 -0.32
27 AT4G33500 Protein phosphatase 2C family protein 0.73 0.33 -0.3
28 AT2G27990 BEL1-like homeodomain 8 BEL1-like homeodomain 8,
POUND-FOOLISH		 0.73 0.32 -0.32
29 AT1G26150 proline-rich extensin-like receptor kinase 10 proline-rich extensin-like
receptor kinase 10, proline-rich
extensin-like receptor kinase 10		 0.72 0.32 -0.32
30 AT2G03390 uvrB/uvrC motif-containing protein 0.72 0.32 -0.31
31 AT3G46440 UDP-XYL synthase 5 UDP-XYL synthase 5 -0.72 0.32 -0.33
32 AT4G39820 Tetratricopeptide repeat (TPR)-like superfamily protein -0.72 0.31 -0.31
33 AT1G08220 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
mitochondrial proton-transporting ATP synthase complex
assembly; LOCATED IN: mitochondrial inner membrane;
EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7
growth stages; CONTAINS InterPro DOMAIN/s: ATPase assembly
factor ATP10, mitochondria (InterPro:IPR007849); Has 168
Blast hits to 168 proteins in 86 species: Archae - 6;
Bacteria - 0; Metazoa - 2; Fungi - 107; Plants - 30;
Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).		 -0.72 0.31 -0.28
34 AT1G71810 Protein kinase superfamily protein 0.72 0.29 -0.3
35 AT3G53920 RNApolymerase sigma-subunit C SIGMA FACTOR 3, RNApolymerase
sigma-subunit C		 0.71 0.32 -0.34
36 AT5G27730 Protein of unknown function (DUF1624) 0.71 0.31 -0.34
37 AT3G02830 zinc finger protein 1 zinc finger protein 1 0.71 0.31 -0.33
38 AT5G43060 Granulin repeat cysteine protease family protein -0.71 0.34 -0.31
39 AT2G26990 proteasome family protein ATCSN2, CONSTITUTIVE
PHOTOMORPHOGENIC 12, CSN2, FUSCA
12		 -0.71 0.32 -0.3
40 AT5G66550 Maf-like protein 0.71 0.31 -0.34
41 AT4G33070 Thiamine pyrophosphate dependent pyruvate decarboxylase
family protein		 -0.71 0.33 -0.29
42 AT5G35170 adenylate kinase family protein 0.71 0.32 -0.32
43 AT1G71050 Heavy metal transport/detoxification superfamily protein heavy metal associated
isoprenylated plant protein 20		 0.71 0.33 -0.32
44 AT4G34560 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G66440.1); Has 67 Blast hits
to 66 proteins in 11 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.71 0.32 -0.33
45 AT3G54960 PDI-like 1-3 ARABIDOPSIS THALIANA PROTEIN
DISULFIDE ISOMERASE 1, PDI-like
1-3, PROTEIN DISULFIDE ISOMERASE
1, PDI-like 1-3		 -0.7 0.32 -0.32
46 AT3G25730 ethylene response DNA binding factor 3 ethylene response DNA binding
factor 3		 -0.7 0.3 -0.32
47 AT4G01320 Peptidase family M48 family protein ATSTE24, STE24 -0.7 0.3 -0.33
48 AT4G39220 Rer1 family protein ATRER1A -0.7 0.31 -0.31
49 AT2G15880 Leucine-rich repeat (LRR) family protein -0.7 0.34 -0.32
50 AT5G47820 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 FRAGILE FIBER 1 0.7 0.31 -0.32
51 AT3G46200 nudix hydrolase homolog 9 nudix hydrolase homolog 9, nudix
hydrolase homolog 9		 0.7 0.32 -0.32
52 AT5G58190 evolutionarily conserved C-terminal region 10 evolutionarily conserved
C-terminal region 10		 -0.7 0.3 -0.3
53 AT3G04780 Protein of unknown function (DUF1000) -0.69 0.32 -0.28
54 AT1G50440 RING/FYVE/PHD zinc finger superfamily protein 0.69 0.31 -0.32
55 AT1G09550 Pectinacetylesterase family protein 0.69 0.3 -0.28
56 AT2G01400 unknown protein; Has 19 Blast hits to 19 proteins in 6
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.69 0.32 -0.31
57 AT3G51790 transmembrane protein G1P-related 1 transmembrane protein G1P-related
1, transmembrane protein
G1P-related 1		 -0.69 0.31 -0.33
58 AT5G44660 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G20190.1); Has 944 Blast hits
to 462 proteins in 141 species: Archae - 2; Bacteria - 370;
Metazoa - 161; Fungi - 102; Plants - 64; Viruses - 6; Other
Eukaryotes - 239 (source: NCBI BLink).		 0.69 0.31 -0.32
59 AT5G16490 ROP-interactive CRIB motif-containing protein 4 ROP-interactive CRIB
motif-containing protein 4		 0.69 0.3 -0.31
60 AT3G17465 ribosomal protein L3 plastid ribosomal protein L3 plastid -0.69 0.32 -0.3
61 AT4G32220 transposable element gene -0.69 0.33 -0.32
62 AT1G01310 CAP (Cysteine-rich secretory proteins, Antigen 5, and
Pathogenesis-related 1 protein) superfamily protein		 0.69 0.3 -0.3
63 AT2G24280 alpha/beta-Hydrolases superfamily protein 0.69 0.32 -0.32
64 AT4G34480 O-Glycosyl hydrolases family 17 protein 0.68 0.32 -0.32
65 AT2G36320 A20/AN1-like zinc finger family protein -0.68 0.32 -0.31
66 AT3G01015 TPX2 (targeting protein for Xklp2) protein family 0.68 0.33 -0.33
67 AT3G20860 NIMA-related kinase 5 NIMA-related kinase 5,
NIMA-related kinase 5		 0.68 0.3 -0.31
68 AT1G30580 GTP binding -0.68 0.32 -0.33
69 AT1G62730 Terpenoid synthases superfamily protein -0.68 0.32 -0.31
70 AT1G19520 pentatricopeptide (PPR) repeat-containing protein NUCLEAR FUSION DEFECTIVE 5 -0.68 0.33 -0.32
71 AT5G61290 Flavin-binding monooxygenase family protein 0.68 0.31 -0.32
72 AT4G26210 Mitochondrial ATP synthase subunit G protein -0.68 0.31 -0.33
73 AT1G08830 copper/zinc superoxide dismutase 1 copper/zinc superoxide dismutase 1 -0.68 0.32 -0.33
74 AT5G43120 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein 0.68 0.3 -0.33
75 AT5G52460 FBD, F-box and Leucine Rich Repeat domains containing
protein		 embryo sac development arrest 41 0.68 0.33 -0.32
76 AT3G56490 HIS triad family protein 3 HISTIDINE TRIAD NUCLEOTIDE-BINDING
1, HIS triad family protein 3		 -0.68 0.31 -0.32
77 AT2G16060 hemoglobin 1 hemoglobin 1, ARATH GLB1, ATGLB1,
CLASS I HEMOGLOBIN, hemoglobin 1,
NSHB1		 -0.68 0.32 -0.31
78 AT5G61670 Encodes a close homolog of the Cauliflower OR (Orange)
protein. The function of OR is to induce the
differentiation of proplastids or other noncolored plastids
into chromoplasts for carotenoid accumulation. Both
proteins contain a Cysteine-rich zinc finger domain that is
highly specific to DnaJ-like molecular chaperons.		 0.68 0.34 -0.34
79 AT5G13770 Pentatricopeptide repeat (PPR-like) superfamily protein 0.68 0.31 -0.32
80 AT2G02220 phytosulfokin receptor 1 PHYTOSULFOKIN RECEPTOR 1,
phytosulfokin receptor 1		 -0.68 0.31 -0.31
81 AT1G69190 Dihydropterin pyrophosphokinase / Dihydropteroate synthase 0.68 0.3 -0.3
82 AT3G07000 Cysteine/Histidine-rich C1 domain family protein -0.68 0.33 -0.31
83 AT5G43800 transposable element gene 0.68 0.32 -0.32
84 AT4G25980 Peroxidase superfamily protein 0.68 0.3 -0.33
85 AT4G36280 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
family protein		 0.68 0.33 -0.32
86 AT5G61650 CYCLIN P4;2 CYCP4, CYCLIN P4;2 -0.68 0.32 -0.32
87 AT2G35310 Transcriptional factor B3 family protein 0.68 0.34 -0.32
88 AT1G54390 PHD finger protein-related INHIBITOR OF GROWTH 2 0.68 0.32 -0.31
89 AT4G34400 AP2/B3-like transcriptional factor family protein 0.68 0.32 -0.33
90 AT1G64930 cytochrome P450, family 87, subfamily A, polypeptide 7 cytochrome P450, family 87,
subfamily A, polypeptide 7		 -0.68 0.32 -0.33
91 AT1G16680 Chaperone DnaJ-domain superfamily protein 0.67 0.31 -0.31
92 AT2G38780 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED
DURING: 13 growth stages; Has 58 Blast hits to 58 proteins
in 23 species: Archae - 0; Bacteria - 4; Metazoa - 1; Fungi
- 0; Plants - 44; Viruses - 0; Other Eukaryotes - 9
(source: NCBI BLink).		 0.67 0.32 -0.32
93 AT2G34140 Dof-type zinc finger DNA-binding family protein -0.67 0.3 -0.31
94 AT3G22810 Plant protein of unknown function (DUF828) with plant
pleckstrin homology-like region		 0.67 0.31 -0.31
95 AT4G02170 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G38700.1); Has 53 Blast hits
to 53 proteins in 10 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.67 0.33 -0.33
96 AT4G20060 ARM repeat superfamily protein EMBRYO DEFECTIVE 1895 0.67 0.33 -0.31
97 AT5G35240 transposable element gene 0.67 0.3 -0.31
98 AT5G60760 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.67 0.3 -0.3
99 AT5G13780 Acyl-CoA N-acyltransferases (NAT) superfamily protein -0.67 0.32 -0.34
100 AT1G52870 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 0.67 0.32 -0.32
101 AT5G07890 myosin heavy chain-related 0.67 0.32 -0.32
102 AT1G66180 Eukaryotic aspartyl protease family protein -0.67 0.32 -0.29
103 AT2G01140 Aldolase superfamily protein PIGMENT DEFECTIVE 345 -0.67 0.3 -0.32
104 AT1G77120 alcohol dehydrogenase 1 ALCOHOL DEHYDROGENASE, alcohol
dehydrogenase 1, ARABIDOPSIS
THALIANA ALCOHOL DEHYDROGENASE,
ATADH1		 -0.67 0.31 -0.28
105 AT4G02930 GTP binding Elongation factor Tu family protein -0.67 0.33 -0.32
106 AT3G18500 DNAse I-like superfamily protein 0.67 0.31 -0.33
107 AT5G66985 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.66 0.33 -0.32
108 AT2G47550 Plant invertase/pectin methylesterase inhibitor superfamily -0.66 0.32 -0.32
109 AT1G07615 GTP-binding protein Obg/CgtA -0.66 0.33 -0.33
110 AT1G52730 Transducin/WD40 repeat-like superfamily protein -0.66 0.32 -0.31
111 AT2G36300 Integral membrane Yip1 family protein -0.66 0.32 -0.33
112 AT5G67220 FMN-linked oxidoreductases superfamily protein -0.66 0.34 -0.3
113 AT2G46140 Late embryogenesis abundant protein -0.66 0.29 -0.3
114 AT1G74080 myb domain protein 122 MYB DOMAIN PROTEIN 122, myb domain
protein 122		 -0.65 0.29 -0.3
115 AT4G34450 coatomer gamma-2 subunit, putative / gamma-2 coat protein,
putative / gamma-2 COP, putative		 -0.65 0.33 -0.32
116 AT4G03120 C2H2 and C2HC zinc fingers superfamily protein -0.65 0.31 -0.31
117 AT4G04180 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.65 0.31 -0.33
118 AT1G26270 Phosphatidylinositol 3- and 4-kinase family protein -0.65 0.31 -0.31
119 AT4G11610 C2 calcium/lipid-binding plant phosphoribosyltransferase
family protein		 -0.65 0.3 -0.34
120 AT3G52890 KCBP-interacting protein kinase KCBP-interacting protein kinase -0.65 0.31 -0.31
121 AT4G39390 nucleotide sugar transporter-KT 1 A. THALIANA NUCLEOTIDE SUGAR
TRANSPORTER-KT 1, nucleotide sugar
transporter-KT 1		 -0.65 0.32 -0.3
122 AT2G32070 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 -0.65 0.32 -0.31
123 AT5G04870 calcium dependent protein kinase 1 ATCPK1, calcium dependent protein
kinase 1		 -0.65 0.31 -0.31
124 AT4G37190 LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 20
plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: Beta tubulin, autoregulation
binding site (InterPro:IPR013838), Misato Segment II,
myosin-like (InterPro:IPR019605), Tubulin/FtsZ, N-terminal
(InterPro:IPR019746); Has 345 Blast hits to 341 proteins in
161 species: Archae - 0; Bacteria - 0; Metazoa - 131; Fungi
- 140; Plants - 55; Viruses - 0; Other Eukaryotes - 19
(source: NCBI BLink).		 -0.64 0.34 -0.33
125 AT3G30843 transposable element gene -0.64 0.33 -0.34
126 AT2G35910 RING/U-box superfamily protein -0.64 0.32 -0.34
127 AT5G14105 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.64 0.3 -0.33
128 AT5G02260 expansin A9 ATEXP9, expansin A9, ATHEXP ALPHA
1.10, EXP9, expansin A9		 -0.63 0.33 -0.34
129 AT5G15090 voltage dependent anion channel 3 ARABIDOPSIS THALIANA VOLTAGE
DEPENDENT ANION CHANNEL 3, voltage
dependent anion channel 3		 -0.63 0.31 -0.32
130 AT1G71210 Pentatricopeptide repeat (PPR) superfamily protein -0.63 0.32 -0.33
131 AT5G13850 nascent polypeptide-associated complex subunit alpha-like
protein 3		 nascent polypeptide-associated
complex subunit alpha-like protein
3		 -0.63 0.35 -0.31
132 AT1G21300 transposable element gene -0.63 0.3 -0.35
133 AT5G19680 Leucine-rich repeat (LRR) family protein -0.63 0.33 -0.32
134 AT3G43190 sucrose synthase 4 ARABIDOPSIS THALIANA SUCROSE
SYNTHASE 4, sucrose synthase 4		 -0.63 0.32 -0.34
135 AT1G08320 bZIP transcription factor family protein bZIP21, TGACG (TGA) motif-binding
protein 9		 -0.63 0.3 -0.29
136 AT5G14310 carboxyesterase 16 carboxyesterase 16,
carboxyesterase 16		 -0.63 0.31 -0.3
137 AT3G43430 RING/U-box superfamily protein -0.63 0.3 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
138 C0227 Ribose D-Ribose D-Ribose ribose degradation,
guanosine nucleotides degradation I,
pyrimidine salvage pathway,
pyridine nucleotide cycling (plants),
adenine and adenosine salvage II,
guanosine nucleotides degradation II,
guanine and guanosine salvage II,
cis-zeatin biosynthesis,
adenosine nucleotides degradation I,
pyrimidine ribonucleosides degradation II 		-0.79 0.45 -0.45 C0227