AT3G28280 : -
Query Information
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AGICode AT3G28280
Description BEST Arabidopsis thaliana protein match is: F-box family protein-related (TAIR:AT3G28330.1); Has 103 Blast hits to 100 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G28280 BEST Arabidopsis thaliana protein match is: F-box family
protein-related (TAIR:AT3G28330.1); Has 103 Blast hits to
100 proteins in 3 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 1 0.33 -0.31
2 AT4G13780 methionine--tRNA ligase, putative / methionyl-tRNA
synthetase, putative / MetRS, putative		 -0.78 0.3 -0.31
3 AT5G37980 Zinc-binding dehydrogenase family protein 0.73 0.3 -0.32
4 AT5G66800 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G50640.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 0.72 0.34 -0.31
5 AT2G24950 Protein of Unknown Function (DUF239) 0.71 0.31 -0.29
6 AT3G42340 transposable element gene 0.69 0.33 -0.3
7 AT5G15020 SIN3-like 2 SIN3-like 2 -0.69 0.32 -0.29
8 AT5G06839 bZIP transcription factor family protein bZIP65, TGACG (TGA) motif-binding
protein 10		 -0.69 0.33 -0.3
9 AT2G42100 Actin-like ATPase superfamily protein 0.68 0.3 -0.33
10 AT3G22070 proline-rich family protein 0.67 0.32 -0.31
11 AT3G19500 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 0.67 0.31 -0.33
12 AT4G03770 transposable element gene 0.67 0.32 -0.29
13 AT3G46900 copper transporter 2 copper transporter 2 0.67 0.31 -0.3
14 AT2G02560 cullin-associated and neddylation dissociated CULLIN-ASSOCIATED AND NEDDYLATION
DISSOCIATED 1, cullin-associated
and neddylation dissociated, ETA2,
HEMIVENATA, TIP120		 -0.66 0.36 -0.33
15 AT2G38150 alpha 1,4-glycosyltransferase family protein 0.66 0.32 -0.33
16 AT1G33920 phloem protein 2-A4 phloem protein 2-A4, phloem
protein 2-A4		 0.66 0.3 -0.27
17 AT3G42730 transposable element gene 0.65 0.31 -0.32
18 AT3G49162 pseudogene of glycoside hydrolase family 28 protein 0.65 0.34 -0.32
19 AT1G23560 Domain of unknown function (DUF220) -0.64 0.33 -0.31
20 AT2G45610 alpha/beta-Hydrolases superfamily protein -0.64 0.32 -0.3
21 AT2G24010 serine carboxypeptidase-like 23 serine carboxypeptidase-like 23 0.64 0.33 -0.31
22 AT5G58280 AP2/B3-like transcriptional factor family protein 0.64 0.29 -0.32
23 AT5G22870 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 0.64 0.31 -0.33
24 AT1G57850 Toll-Interleukin-Resistance (TIR) domain family protein 0.64 0.3 -0.31
25 AT5G59590 UDP-glucosyl transferase 76E2 UDP-glucosyl transferase 76E2 -0.64 0.32 -0.31
26 AT5G26700 RmlC-like cupins superfamily protein -0.64 0.3 -0.3
27 AT3G49820 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G65925.1); Has 23 Blast hits
to 23 proteins in 7 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.64 0.31 -0.32
28 AT3G25260 Major facilitator superfamily protein -0.63 0.32 -0.3
29 AT1G62940 acyl-CoA synthetase 5 acyl-CoA synthetase 5 -0.63 0.33 -0.3
30 AT1G42460 transposable element gene -0.63 0.31 -0.31
31 AT2G39060 Nodulin MtN3 family protein AtSWEET9, SWEET9 0.63 0.29 -0.32
32 AT2G16760 Calcium-dependent phosphotriesterase superfamily protein -0.63 0.31 -0.33
33 AT2G23480 transposable element gene 0.63 0.33 -0.3
34 AT1G54790 GDSL-like Lipase/Acylhydrolase superfamily protein 0.63 0.3 -0.31
35 AT5G01310 APRATAXIN-like APRATAXIN-like -0.63 0.31 -0.31
36 AT1G23350 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 0.62 0.33 -0.31
37 AT5G04210 CCCH-type zinc fingerfamily protein with RNA-binding domain 0.62 0.3 -0.33
38 AT1G05380 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc
finger protein		 -0.62 0.33 -0.3
39 AT1G05330 unknown protein; Has 6 Blast hits to 6 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.62 0.34 -0.32
40 AT4G33800 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.62 0.32 -0.31
41 AT2G01790 TRAF-like family protein -0.61 0.32 -0.29
42 AT5G26120 alpha-L-arabinofuranosidase 2 alpha-L-arabinofuranosidase 2,
ARABIDOPSIS THALIANA
ALPHA-L-ARABINOFURANOSIDASE 2		 0.61 0.33 -0.29
43 AT3G51680 NAD(P)-binding Rossmann-fold superfamily protein AtSDR2, short-chain
dehydrogenase/reductase 2		 -0.61 0.32 -0.35
44 AT5G52140 RING/U-box superfamily protein 0.61 0.3 -0.3
45 ATMG01410 open reading frame 204 open reading frame 204 0.61 0.33 -0.33
46 AT5G35920 cytochrome P450, family 79, subfamily A, polypeptide 4
pseudogene		 cytochrome P450, family 79,
subfamily A, polypeptide 4
pseudogene		 0.61 0.32 -0.33
47 AT3G12660 FASCICLIN-like arabinogalactan protein 14 precursor FASCICLIN-like arabinogalactan
protein 14 precursor		 -0.6 0.3 -0.32
48 AT4G13960 F-box/RNI-like superfamily protein 0.6 0.31 -0.3
49 AT3G05960 sugar transporter 6 SUGAR TRANSPORTER 6, sugar
transporter 6		 -0.6 0.32 -0.3
50 AT4G24860 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.6 0.3 -0.3
51 AT1G22960 Pentatricopeptide repeat (PPR) superfamily protein -0.6 0.31 -0.32
52 AT5G53060 RNA-binding KH domain-containing protein -0.6 0.3 -0.31
53 AT5G14890 NHL domain-containing protein 0.6 0.31 -0.33
54 AT3G45320 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G60330.1); Has 7 Blast hits to
7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.6 0.31 -0.31
55 AT1G28327 unknown protein; Has 52 Blast hits to 52 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.6 0.3 -0.32
56 AT2G47660 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.6 0.31 -0.33
57 AT4G23310 cysteine-rich RLK (RECEPTOR-like protein kinase) 23 cysteine-rich RLK (RECEPTOR-like
protein kinase) 23		 0.6 0.31 -0.32
58 AT5G10090 Tetratricopeptide repeat (TPR)-like superfamily protein tetratricopeptide repeat 13 0.6 0.31 -0.31
59 AT4G04370 Tetratricopeptide repeat (TPR)-like superfamily protein 0.59 0.33 -0.33
60 AT2G23900 Pectin lyase-like superfamily protein 0.59 0.3 -0.3
61 AT2G22180 hydroxyproline-rich glycoprotein family protein 0.59 0.33 -0.34
62 AT5G45070 phloem protein 2-A8 phloem protein 2-A8, phloem
protein 2-A8		 -0.59 0.31 -0.31
63 AT2G41060 RNA-binding (RRM/RBD/RNP motifs) family protein -0.59 0.32 -0.32
64 AT3G60330 H(+)-ATPase 7 H(+)-ATPase 7, H(+)-ATPase 7 -0.59 0.31 -0.32
65 AT5G51160 Ankyrin repeat family protein -0.59 0.32 -0.29
66 AT2G01280 Cyclin/Brf1-like TBP-binding protein maternal effect embryo arrest 65 -0.59 0.33 -0.33
67 AT3G46220 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF2042 (InterPro:IPR018611); Has 559
Blast hits to 533 proteins in 154 species: Archae - 3;
Bacteria - 32; Metazoa - 305; Fungi - 42; Plants - 50;
Viruses - 3; Other Eukaryotes - 124 (source: NCBI BLink).		 -0.59 0.32 -0.31
68 AT3G50420 Pentatricopeptide repeat (PPR) superfamily protein -0.59 0.33 -0.3
69 AT1G23640 unknown protein; LOCATED IN: chloroplast; EXPRESSED IN:
petal, leaf whorl, sepal, flower; EXPRESSED DURING: 4
anthesis, petal differentiation and expansion stage;
CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana
protein match is: Domain of unknown function DUF220
(TAIR:AT1G23660.1); Has 270 Blast hits to 130 proteins in
12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 270; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.59 0.29 -0.34
70 AT4G29340 profilin 4 profilin 4 0.58 0.34 -0.31
71 AT1G63590 Receptor-like protein kinase-related family protein 0.58 0.31 -0.32
72 AT2G25340 vesicle-associated membrane protein 712 vesicle-associated membrane
protein 712, VAMP712,
vesicle-associated membrane
protein 712		 0.58 0.33 -0.32
73 AT3G27410 unknown protein; Has 10 Blast hits to 10 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.58 0.3 -0.3
74 AT1G53930 Ubiquitin-like superfamily protein 0.58 0.32 -0.33
75 AT2G30470 high-level expression of sugar-inducible gene 2 high-level expression of
sugar-inducible gene 2,
VP1/ABI3-LIKE 1		 -0.58 0.32 -0.32
76 AT1G54470 RNI-like superfamily protein resistance to Peronospora
parasitica 27		 0.58 0.3 -0.31
77 AT1G51700 DOF zinc finger protein 1 DOF zinc finger protein 1, DOF
zinc finger protein 1		 0.58 0.3 -0.34
78 AT2G18880 vernalization5/VIN3-like vernalization5/VIN3-like 2,
VIN3-like 3		 0.57 0.3 -0.31
79 AT4G39160 Homeodomain-like superfamily protein -0.57 0.32 -0.31
80 AT3G04740 RNA polymerase II transcription mediators ARABIDOPSIS MEDIATOR COMPONENTS
14, MEDIATOR COMPONENTS 14,
STRUWWELPETER		 -0.57 0.31 -0.32
81 AT1G06970 cation/hydrogen exchanger 14 ATCHX14, cation/hydrogen exchanger
14		 0.57 0.33 -0.32
82 AT5G42440 Protein kinase superfamily protein 0.57 0.3 -0.3
83 AT5G53840 F-box/RNI-like/FBD-like domains-containing protein 0.57 0.28 -0.3
84 AT1G34080 transposable element gene -0.57 0.33 -0.33
85 AT2G02640 Cysteine/Histidine-rich C1 domain family protein 0.57 0.33 -0.33
86 AT3G62640 Protein of unknown function (DUF3511) -0.57 0.32 -0.31
87 AT5G12280 SWAP (Suppressor-of-White-APricot)/surp RNA-binding
domain-containing protein		 0.57 0.32 -0.33
88 AT5G22980 serine carboxypeptidase-like 47 serine carboxypeptidase-like 47 -0.57 0.33 -0.28
89 AT5G47400 unknown protein; FUNCTIONS IN: molecular_function unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 -0.57 0.31 -0.29
90 AT2G07455 transposable element gene 0.57 0.31 -0.34
91 AT5G58010 LJRHL1-like 3 LJRHL1-like 3 -0.57 0.31 -0.32
92 AT1G62260 mitochondrial editing factor 9 mitochondrial editing factor 9 -0.56 0.3 -0.34
93 AT5G11050 myb domain protein 64 myb domain protein 64, myb domain
protein 64		 -0.56 0.33 -0.31
94 AT1G51640 exocyst subunit exo70 family protein G2 exocyst subunit exo70 family
protein G2, exocyst subunit exo70
family protein G2		 -0.56 0.31 -0.32
95 AT5G54950 Aconitase family protein -0.56 0.29 -0.3
96 AT5G65590 Dof-type zinc finger DNA-binding family protein 0.56 0.31 -0.29
97 AT3G21660 UBX domain-containing protein 0.56 0.29 -0.33
98 AT3G13220 ABC-2 type transporter family protein ATP-binding cassette G26,
AtABCG26, MSR02, WBC27		 -0.56 0.33 -0.3
99 AT3G49850 telomere repeat binding factor 3 ATTRB3, TELOMERE-BINDING PROTEIN
2, telomere repeat binding factor
3		 0.56 0.3 -0.33
100 AT5G51900 Cytochrome P450 family protein 0.56 0.31 -0.32
101 AT1G07160 Protein phosphatase 2C family protein -0.56 0.32 -0.3
102 AT1G64290 F-box protein-related 0.55 0.32 -0.3
103 AT1G60380 NAC (No Apical Meristem) domain transcriptional regulator
superfamily protein		 0.55 0.29 -0.31
104 AT3G32300 transposable element gene 0.55 0.31 -0.31
105 AT3G32080 transposable element gene -0.55 0.31 -0.32
106 AT4G28370 RING/U-box superfamily protein -0.55 0.32 -0.32
107 AT1G68940 Armadillo/beta-catenin-like repeat family protein -0.55 0.32 -0.33
108 AT5G64220 Calmodulin-binding transcription activator protein with
CG-1 and Ankyrin domains		 -0.55 0.31 -0.35
109 AT2G05010 transposable element gene 0.55 0.34 -0.32
110 AT3G45820 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.55 0.31 -0.33
111 AT4G27400 Late embryogenesis abundant (LEA) protein-related -0.55 0.32 -0.31
112 AT5G13790 AGAMOUS-like 15 AGAMOUS-like 15 0.55 0.31 -0.3
113 AT1G35647 transposable element gene 0.55 0.35 -0.32
114 AT4G32630 ArfGap/RecO-like zinc finger domain-containing protein 0.55 0.33 -0.33
115 AT1G80740 chromomethylase 1 chromomethylase 1, DNA
METHYLTRANSFERASE 4		 0.55 0.32 -0.31
116 AT1G14090 pseudogene, pentatricopeptide (PPR) repeat-containing
protein, contains Pfam profile PF01535: PPR repeat; blastp
match of 33% identity and 1.5e-16 P-value to
GP|20219038|gb|AAM15782.1|AC104428_3|AC104428 Putative
indole-3-acetate beta-glucosyltransferase {Oryza sativa
(japonica cultivar-group)}		 -0.55 0.33 -0.31
117 AT1G02680 TBP-associated factor 13 TBP-associated factor 13 0.54 0.32 -0.32
118 AT3G42400 transposable element gene 0.54 0.33 -0.3
119 AT5G28780 PIF1 helicase 0.54 0.34 -0.32
120 AT5G24540 beta glucosidase 31 beta glucosidase 31 0.54 0.31 -0.31
121 AT3G30260 AGAMOUS-like 79 AGAMOUS-like 79 0.54 0.32 -0.32