AT3G12860 : -
Query Information
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AGICode AT3G12860
Description NOP56-like pre RNA processing ribonucleoprotein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G12860 NOP56-like pre RNA processing ribonucleoprotein 1 0.33 -0.3
2 AT5G08180 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.9 0.34 -0.32
3 AT3G05060 NOP56-like pre RNA processing ribonucleoprotein 0.86 0.31 -0.31
4 AT3G02300 Regulator of chromosome condensation (RCC1) family protein -0.84 0.34 -0.32
5 AT1G08580 unknown protein; Has 39 Blast hits to 39 proteins in 15
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 35; Viruses - 0; Other Eukaryotes - 4 (source:
NCBI BLink).		 0.84 0.31 -0.32
6 AT5G05210 Surfeit locus protein 6 0.83 0.31 -0.31
7 AT2G37990 ribosome biogenesis regulatory protein (RRS1) family
protein		 0.83 0.3 -0.32
8 AT1G17360 BEST Arabidopsis thaliana protein match is:
COP1-interacting protein-related (TAIR:AT1G72410.1); Has
9949 Blast hits to 7480 proteins in 576 species: Archae -
12; Bacteria - 1007; Metazoa - 3636; Fungi - 982; Plants -
444; Viruses - 50; Other Eukaryotes - 3818 (source: NCBI
BLink).		 -0.83 0.33 -0.32
9 AT1G53280 Class I glutamine amidotransferase-like superfamily protein DJ-1 homolog B, DJ-1 homolog B -0.83 0.31 -0.33
10 AT3G26410 methyltransferases;nucleic acid binding AtTRM11, tRNA modification 11 0.82 0.32 -0.3
11 AT4G25630 fibrillarin 2 ATFIB2, fibrillarin 2 0.82 0.31 -0.33
12 AT1G22270 Trm112p-like protein 0.82 0.32 -0.29
13 AT1G03530 nuclear assembly factor 1 ATNAF1, nuclear assembly factor 1 0.81 0.31 -0.31
14 AT4G02120 CTP synthase family protein -0.81 0.32 -0.32
15 AT4G38060 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G65480.1); Has 63 Blast hits
to 63 proteins in 13 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.81 0.32 -0.29
16 AT3G10530 Transducin/WD40 repeat-like superfamily protein 0.81 0.31 -0.33
17 AT2G26060 Transducin/WD40 repeat-like superfamily protein embryo defective 1345 0.81 0.31 -0.31
18 AT3G62010 unknown protein; LOCATED IN: cellular_component unknown;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15
growth stages; Has 553 Blast hits to 216 proteins in 93
species: Archae - 0; Bacteria - 124; Metazoa - 193; Fungi -
58; Plants - 108; Viruses - 0; Other Eukaryotes - 70
(source: NCBI BLink).		 -0.81 0.3 -0.32
19 AT3G49080 Ribosomal protein S5 domain 2-like superfamily protein 0.81 0.29 -0.31
20 AT3G15460 Ribosomal RNA processing Brix domain protein 0.81 0.31 -0.31
21 AT1G52930 Ribosomal RNA processing Brix domain protein 0.8 0.33 -0.32
22 AT2G31410 unknown protein; Has 1719 Blast hits to 1091 proteins in
184 species: Archae - 5; Bacteria - 24; Metazoa - 559;
Fungi - 169; Plants - 192; Viruses - 1; Other Eukaryotes -
769 (source: NCBI BLink).		 0.8 0.32 -0.31
23 AT5G04600 RNA-binding (RRM/RBD/RNP motifs) family protein 0.8 0.3 -0.32
24 AT1G18850 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 40 Blast hits to 40 proteins
in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.8 0.3 -0.32
25 AT2G34570 PIN domain-like family protein maternal effect embryo arrest 21 0.79 0.31 -0.34
26 AT5G22330 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 ATTIP49A, RESISTANCE TO
PSEUDOMONAS SYRINGAE PV MACULICOLA
INTERACTOR 1		 0.79 0.32 -0.32
27 AT4G30220 small nuclear ribonucleoprotein F small nuclear ribonucleoprotein F 0.79 0.3 -0.34
28 AT5G41190 CONTAINS InterPro DOMAIN/s: Nin one binding (NOB1)
Zn-ribbon like (InterPro:IPR014881), D-site 20S pre-rRNA
nuclease (InterPro:IPR017117); Has 1807 Blast hits to 1807
proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa
- 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink).		 0.79 0.32 -0.32
29 AT2G31725 Eukaryotic protein of unknown function (DUF842) 0.79 0.29 -0.31
30 AT1G26840 origin recognition complex protein 6 ARABIDOPSIS THALIANA ORIGIN
RECOGNITION COMPLEX PROTEIN 6,
origin recognition complex protein
6		 0.79 0.33 -0.32
31 AT4G22380 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.79 0.31 -0.31
32 AT5G18630 alpha/beta-Hydrolases superfamily protein -0.79 0.32 -0.33
33 AT1G32440 plastidial pyruvate kinase 3 plastidial pyruvate kinase 3 0.78 0.31 -0.31
34 AT3G53950 glyoxal oxidase-related protein -0.78 0.33 -0.32
35 AT1G15480 Tetratricopeptide repeat (TPR)-like superfamily protein 0.78 0.29 -0.33
36 AT1G75990 PAM domain (PCI/PINT associated module) protein 0.78 0.32 -0.33
37 AT5G02880 ubiquitin-protein ligase 4 ubiquitin-protein ligase 4 -0.78 0.31 -0.35
38 AT3G22300 ribosomal protein S10 ribosomal protein S10 0.78 0.33 -0.32
39 AT4G31120 SHK1 binding protein 1 ATPRMT5, PROTEIN ARGININE
METHYLTRANSFERASE 5, SHK1 binding
protein 1		 0.78 0.3 -0.32
40 AT2G44510 CDK inhibitor P21 binding protein 0.78 0.3 -0.31
41 AT1G72730 DEA(D/H)-box RNA helicase family protein 0.78 0.31 -0.33
42 AT1G80270 PENTATRICOPEPTIDE REPEAT 596 PENTATRICOPEPTIDE REPEAT 596 0.77 0.33 -0.31
43 AT4G20890 tubulin beta-9 chain tubulin beta-9 chain 0.77 0.33 -0.34
44 AT5G67630 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.77 0.31 -0.33
45 AT5G27350 Major facilitator superfamily protein SFP1 -0.77 0.3 -0.33
46 AT3G16230 Predicted eukaryotic LigT -0.77 0.32 -0.3
47 AT5G11630 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G17310.1); Has 90 Blast
hits to 90 proteins in 10 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.77 0.3 -0.34
48 AT3G49990 unknown protein; Has 1524 Blast hits to 1298 proteins in
225 species: Archae - 9; Bacteria - 84; Metazoa - 474;
Fungi - 184; Plants - 98; Viruses - 17; Other Eukaryotes -
658 (source: NCBI BLink).		 0.76 0.31 -0.3
49 AT2G29540 RNApolymerase 14 kDa subunit ATRPAC14, RNApolymerase 14 kDa
subunit, RNApolymerase 14 kDa
subunit		 0.76 0.3 -0.32
50 AT5G19570 unknown protein; CONTAINS InterPro DOMAIN/s:
Uncharacterised protein family UPF0546
(InterPro:IPR018908); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
339 (source: NCBI BLink).		 0.76 0.33 -0.3
51 AT1G01770 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF1446 (InterPro:IPR010839); Has 1597
Blast hits to 1509 proteins in 306 species: Archae - 4;
Bacteria - 843; Metazoa - 22; Fungi - 131; Plants - 31;
Viruses - 0; Other Eukaryotes - 566 (source: NCBI BLink).		 -0.76 0.34 -0.31
52 AT2G18520 Tetratricopeptide repeat (TPR)-like superfamily protein 0.76 0.3 -0.29
53 AT1G15420 CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp12
(InterPro:IPR007148); Has 764 Blast hits to 656 proteins in
193 species: Archae - 0; Bacteria - 42; Metazoa - 237;
Fungi - 154; Plants - 85; Viruses - 23; Other Eukaryotes -
223 (source: NCBI BLink).		 0.76 0.3 -0.33
54 AT3G12520 sulfate transporter 4;2 sulfate transporter 4;2 -0.75 0.32 -0.31
55 AT3G28050 nodulin MtN21 /EamA-like transporter family protein -0.75 0.29 -0.32
56 AT4G19160 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.75 0.31 -0.31
57 AT5G56740 histone acetyltransferase of the GNAT family 2 HAC07, HAC7, HAG02, histone
acetyltransferase of the GNAT
family 2		 0.75 0.3 -0.31
58 AT3G03060 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.75 0.32 -0.31
59 AT1G03110 Transducin/WD40 repeat-like superfamily protein AtTRM82, tRNA modification 82 0.75 0.29 -0.33
60 AT1G11720 starch synthase 3 starch synthase 3, starch synthase
3		 -0.75 0.32 -0.31
61 AT5G12220 las1-like family protein 0.74 0.32 -0.31
62 AT3G23830 glycine-rich RNA-binding protein 4 AtGRP4, GR-RBP4, glycine-rich
RNA-binding protein 4		 0.74 0.3 -0.32
63 AT3G26580 Tetratricopeptide repeat (TPR)-like superfamily protein -0.74 0.33 -0.32
64 AT3G07170 Sterile alpha motif (SAM) domain-containing protein 0.74 0.32 -0.32
65 AT4G26430 COP9 signalosome subunit 6B COP9 signalosome subunit 6B 0.74 0.32 -0.3
66 AT1G02960 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G02965.1); Has 83 Blast hits
to 82 proteins in 37 species: Archae - 0; Bacteria - 2;
Metazoa - 20; Fungi - 7; Plants - 29; Viruses - 0; Other
Eukaryotes - 25 (source: NCBI BLink).		 -0.74 0.31 -0.31
67 AT4G01990 Tetratricopeptide repeat (TPR)-like superfamily protein 0.74 0.34 -0.32
68 AT3G59300 Pentatricopeptide repeat (PPR) superfamily protein -0.74 0.32 -0.31
69 AT1G18330 Homeodomain-like superfamily protein EARLY-PHYTOCHROME-RESPONSIVE1,
REVEILLE 7		 0.74 0.32 -0.33
70 AT1G53560 Ribosomal protein L18ae family -0.74 0.29 -0.31
71 AT5G13690 alpha-N-acetylglucosaminidase family / NAGLU family CYCLOPS 1,
N-ACETYL-GLUCOSAMINIDASE		 -0.74 0.3 -0.33
72 AT5G44110 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 ATP-binding cassette A21,
ARABIDOPSIS THALIANA NON-INTRINSIC
ABC PROTEIN, ATPOP1, POP1		 0.74 0.33 -0.31
73 AT1G63160 replication factor C 2 EMBRYO DEFECTIVE 2811, replication
factor C 2		 0.74 0.32 -0.31
74 AT4G34360 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.74 0.28 -0.31
75 AT3G28270 Protein of unknown function (DUF677) -0.73 0.32 -0.32
76 AT1G19650 Sec14p-like phosphatidylinositol transfer family protein -0.73 0.34 -0.34
77 AT5G48850 Tetratricopeptide repeat (TPR)-like superfamily protein SULPHUR DEFICIENCY-INDUCED 1 -0.73 0.31 -0.3
78 AT2G14520 CBS domain-containing protein with a domain of unknown
function (DUF21)		 -0.73 0.32 -0.29
79 AT1G48430 Dihydroxyacetone kinase -0.73 0.33 -0.31
80 AT3G56140 Protein of unknown function (DUF399 and DUF3411) -0.73 0.32 -0.32
81 AT5G13760 Plasma-membrane choline transporter family protein -0.73 0.3 -0.3
82 AT1G26670 Vesicle transport v-SNARE family protein ATVTI12, VESICAL TRANSPORT V-SNARE
12, VTI1B		 -0.72 0.34 -0.32
83 AT5G11350 DNAse I-like superfamily protein -0.72 0.34 -0.31
84 AT2G04230 FBD, F-box and Leucine Rich Repeat domains containing
protein		 -0.72 0.31 -0.33
85 AT4G09340 SPla/RYanodine receptor (SPRY) domain-containing protein -0.72 0.32 -0.33
86 AT5G45370 nodulin MtN21 /EamA-like transporter family protein -0.72 0.3 -0.32
87 AT2G36950 Heavy metal transport/detoxification superfamily protein -0.72 0.3 -0.31
88 AT3G26000 Ribonuclease inhibitor -0.72 0.33 -0.31
89 AT5G37930 Protein with RING/U-box and TRAF-like domains -0.72 0.31 -0.34
90 AT1G04440 casein kinase like 13 casein kinase like 13 -0.71 0.29 -0.3
91 AT2G22910 N-acetyl-l-glutamate synthase 1 N-acetyl-l-glutamate synthase 1 -0.71 0.31 -0.33
92 AT3G09600 Homeodomain-like superfamily protein LHY-CCA1-LIKE5, REVEILLE 8 -0.71 0.31 -0.34
93 AT3G11880 Protein of unknown function DUF2359, transmembrane -0.7 0.3 -0.29
94 AT4G37270 heavy metal atpase 1 ARABIDOPSIS THALIANA HEAVY METAL
ATPASE 1, heavy metal atpase 1		 -0.7 0.32 -0.31
95 AT5G58200 Calcineurin-like metallo-phosphoesterase superfamily
protein		 -0.7 0.3 -0.33
96 AT1G28320 protease-related DEG15 -0.7 0.31 -0.31
97 AT2G41480 Peroxidase superfamily protein -0.7 0.3 -0.32
98 AT1G30220 inositol transporter 2 ARABIDOPSIS THALIANA INOSITOL
TRANSPORTER 2, inositol
transporter 2		 -0.7 0.32 -0.31
99 AT4G29220 phosphofructokinase 1 phosphofructokinase 1 -0.7 0.32 -0.3
100 AT1G09415 NIM1-interacting 3 NIM1-interacting 3 -0.69 0.3 -0.3
101 AT3G19420 PTEN 2 PTEN 2, PTEN 2, phosphatase and
TENsin homolog deleted on
chromosome ten 2A		 -0.69 0.31 -0.31
102 AT1G17980 poly(A) polymerase 1 poly(A) polymerase 1 -0.69 0.31 -0.33
103 AT3G11230 Yippee family putative zinc-binding protein -0.69 0.3 -0.33
104 AT1G30260 BEST Arabidopsis thaliana protein match is:
Galactosyltransferase family protein (TAIR:AT4G21060.1);
Has 30 Blast hits to 30 proteins in 8 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.69 0.31 -0.32
105 AT3G02700 NC domain-containing protein-related -0.68 0.32 -0.32
106 AT3G14920 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A
protein		 -0.68 0.32 -0.3
107 AT5G25520 SPOC domain / Transcription elongation factor S-II protein -0.68 0.3 -0.33
108 AT5G57815 Cytochrome c oxidase, subunit Vib family protein -0.68 0.33 -0.31
109 AT3G23200 Uncharacterised protein family (UPF0497) -0.68 0.36 -0.32
110 AT2G46580 Pyridoxamine 5'-phosphate oxidase family protein -0.68 0.3 -0.32
111 AT4G33960 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 20 plant structures;
EXPRESSED DURING: 10 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G15830.1); Has 32 Blast hits to 32 proteins in 4
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.67 0.3 -0.31
112 AT1G16730 unknown protein 6 unknown protein 6 -0.67 0.32 -0.32
113 AT1G17340 Phosphoinositide phosphatase family protein -0.67 0.32 -0.33
114 AT1G17680 tetratricopeptide repeat (TPR)-containing protein -0.67 0.31 -0.34
115 AT3G01200 PPDK regulatory protein 2 PPDK regulatory protein 2, PPDK
regulatory protein 2		 -0.67 0.32 -0.33
116 AT4G26980 RNI-like superfamily protein -0.67 0.32 -0.31
117 AT5G10940 transducin family protein / WD-40 repeat family protein ALTERED SEED GERMINATION 2 -0.67 0.28 -0.31
118 AT4G15475 F-box/RNI-like superfamily protein -0.67 0.33 -0.32
119 AT3G16910 acyl-activating enzyme 7 acyl-activating enzyme 7, ACETATE
NON-UTILIZING 1		 -0.66 0.32 -0.3
120 AT1G50950 Thioredoxin protein with domain of unknown function
(DUF1692)		 -0.66 0.29 -0.31
121 AT1G77420 alpha/beta-Hydrolases superfamily protein -0.66 0.31 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
122 C0129 Kaempferol-3-(2''-O-α-rhamnosyl)-O-β-glucosyl-7-O-α-rhamnoside Kaempferol-3-(2''-O-α-L-rhamnosyl)-O-β-D-glucosyl-7-O-α-L-rhamnoside - kaempferol glucoside biosynthesis (Arabidopsis) -0.73 0.48 -0.46
123 C0193 Pantothenic acid D,L-Pantothenic acid Pantothenate pantothenate biosynthesis -0.7 0.47 -0.43 C0193
124 C0184 MST_3110.4 - - - -0.67 0.46 -0.45