AT3G12640 : -
Query Information
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AGICode AT3G12640
Description RNA binding (RRM/RBD/RNP motifs) family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G12640 RNA binding (RRM/RBD/RNP motifs) family protein 1 0.3 -0.32
2 AT1G72320 pumilio 23 pumilio 23, pumilio 23 0.8 0.31 -0.32
3 AT3G06480 DEAD box RNA helicase family protein 0.72 0.3 -0.31
4 AT5G61960 MEI2-like protein 1 MEI2-like protein 1, MEI2-like
protein 1		 0.7 0.32 -0.31
5 AT5G46210 cullin4 ATCUL4, cullin4 0.69 0.33 -0.31
6 AT5G42920 THO complex, subunit 5 AtTHO5, THO5 0.68 0.31 -0.32
7 AT1G32810 RING/FYVE/PHD zinc finger superfamily protein 0.68 0.31 -0.33
8 AT2G13540 ARM repeat superfamily protein ABA HYPERSENSITIVE 1, ATCBP80,
CAP-BINDING PROTEIN 80, ENSALADA		 0.68 0.31 -0.29
9 AT3G12670 CTP synthase family protein embryo defective 2742 0.68 0.31 -0.29
10 AT5G06280 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G52520.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 -0.68 0.34 -0.3
11 AT2G27760 tRNAisopentenyltransferase 2 tRNAisopentenyltransferase 2,
IPPT, tRNAisopentenyltransferase 2		 0.67 0.32 -0.3
12 AT1G71090 Auxin efflux carrier family protein -0.67 0.29 -0.33
13 AT2G30470 high-level expression of sugar-inducible gene 2 high-level expression of
sugar-inducible gene 2,
VP1/ABI3-LIKE 1		 0.67 0.3 -0.33
14 AT5G01290 mRNA capping enzyme family protein 0.67 0.32 -0.32
15 AT3G25890 Integrase-type DNA-binding superfamily protein cytokinin response factor 11 0.66 0.32 -0.3
16 AT2G37520 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc
finger domain		 0.66 0.34 -0.31
17 AT2G42390 protein kinase C substrate, heavy chain-related -0.66 0.31 -0.32
18 AT4G24880 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.66 0.32 -0.31
19 AT3G02990 heat shock transcription factor A1E heat shock transcription factor
A1E, heat shock transcription
factor A1E		 0.66 0.32 -0.31
20 AT1G53590 Calcium-dependent lipid-binding (CaLB domain) family
protein		 NTMC2T6.1, NTMC2TYPE6.1 0.65 0.31 -0.3
21 AT1G64550 general control non-repressible 3 ATP-binding cassette F3, AtABCF3,
AtGCN20, general control
non-repressible 3, general control
non-repressible 20, general
control non-repressible 3,
susceptible to
coronatine-deficient Pst DC3000 5		 0.64 0.32 -0.31
22 AT1G17665 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 15 plant structures;
EXPRESSED DURING: 11 growth stages; Has 149 Blast hits to
146 proteins in 39 species: Archae - 0; Bacteria - 4;
Metazoa - 21; Fungi - 5; Plants - 30; Viruses - 0; Other
Eukaryotes - 89 (source: NCBI BLink).		 0.64 0.33 -0.31
23 AT3G13460 evolutionarily conserved C-terminal region 2 evolutionarily conserved
C-terminal region 2		 0.64 0.31 -0.3
24 AT4G38740 rotamase CYP 1 rotamase CYP 1 -0.64 0.29 -0.31
25 AT5G62190 DEAD box RNA helicase (PRH75) PRH75 0.64 0.3 -0.3
26 AT3G01540 DEAD box RNA helicase 1 ARABIDOPSIS THALIANA DEAD BOX RNA
HELICASE 1, DEAD box RNA helicase
1		 0.64 0.3 -0.32
27 AT2G41530 S-formylglutathione hydrolase ARABIDOPSIS THALIANA
S-FORMYLGLUTATHIONE HYDROLASE,
S-formylglutathione hydrolase		 -0.64 0.32 -0.32
28 AT4G00520 Acyl-CoA thioesterase family protein -0.63 0.34 -0.3
29 AT1G48360 zinc ion binding;nucleic acid binding;hydrolases, acting on
acid anhydrides, in phosphorus-containing anhydrides		 0.63 0.29 -0.33
30 AT5G01350 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink).		 0.63 0.3 -0.32
31 AT1G04860 ubiquitin-specific protease 2 ATUBP2, ubiquitin-specific
protease 2		 0.63 0.31 -0.32
32 AT4G14600 Target SNARE coiled-coil domain protein -0.62 0.32 -0.28
33 AT5G53570 Ypt/Rab-GAP domain of gyp1p superfamily protein 0.62 0.31 -0.32
34 AT2G26170 cytochrome P450, family 711, subfamily A, polypeptide 1 cytochrome P450, family 711,
subfamily A, polypeptide 1, MORE
AXILLARY BRANCHES 1		 -0.62 0.32 -0.3
35 AT1G06760 winged-helix DNA-binding transcription factor family
protein		 -0.62 0.32 -0.3
36 AT5G02560 histone H2A 12 histone H2A 12 -0.62 0.32 -0.32
37 AT1G71350 eukaryotic translation initiation factor SUI1 family
protein		 0.62 0.32 -0.32
38 AT3G60680 Plant protein of unknown function (DUF641) 0.61 0.32 -0.3
39 AT1G72560 ARM repeat superfamily protein PAUSED 0.61 0.33 -0.32
40 AT4G17410 DWNN domain, a CCHC-type zinc finger 0.61 0.33 -0.33
41 AT1G48410 Stabilizer of iron transporter SufD / Polynucleotidyl
transferase		 ARGONAUTE 1 0.61 0.31 -0.31
42 AT1G76960 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 9 plant structures;
EXPRESSED DURING: 8 growth stages; Has 8 Blast hits to 8
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 -0.61 0.31 -0.32
43 AT1G27900 RNA helicase family protein 0.61 0.31 -0.3
44 AT3G44680 histone deacetylase 9 HDA09, histone deacetylase 9 0.6 0.29 -0.31
45 AT5G48120 ARM repeat superfamily protein 0.6 0.32 -0.32
46 AT3G07880 Immunoglobulin E-set superfamily protein SUPERCENTIPEDE1 -0.6 0.32 -0.31
47 AT5G42940 RING/U-box superfamily protein 0.6 0.32 -0.32
48 AT4G27910 SET domain protein 16 ATX4, SET domain protein 16 0.6 0.34 -0.34
49 AT3G19670 pre-mRNA-processing protein 40B pre-mRNA-processing protein 40B,
pre-mRNA-processing protein 40B		 0.59 0.32 -0.32
50 AT1G35515 high response to osmotic stress 10 high response to osmotic stress
10, MYB8		 -0.59 0.31 -0.33
51 AT3G43800 glutathione S-transferase tau 27 glutathione S-transferase tau 27,
glutathione S-transferase tau 27		 -0.59 0.32 -0.32
52 AT5G03170 FASCICLIN-like arabinogalactan-protein 11 ARABIDOPSIS FASCICLIN-LIKE
ARABINOGALACTAN-PROTEIN 11,
FASCICLIN-like
arabinogalactan-protein 11		 -0.59 0.34 -0.32
53 AT4G08960 phosphotyrosyl phosphatase activator (PTPA) family protein 0.58 0.31 -0.3
54 AT4G28370 RING/U-box superfamily protein 0.58 0.3 -0.31
55 AT1G75860 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G20100.1); Has 258 Blast hits
to 235 proteins in 58 species: Archae - 0; Bacteria - 4;
Metazoa - 59; Fungi - 16; Plants - 90; Viruses - 0; Other
Eukaryotes - 89 (source: NCBI BLink).		 0.58 0.32 -0.32
56 AT5G51300 splicing factor-related 0.58 0.31 -0.3
57 AT5G61380 CCT motif -containing response regulator protein APRR1, TIMING OF CAB EXPRESSION 1,
PSEUDO-RESPONSE REGULATOR 1,
TIMING OF CAB EXPRESSION 1		 0.57 0.29 -0.31
58 AT4G31330 Protein of unknown function, DUF599 -0.57 0.33 -0.3
59 AT1G20100 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G75860.1); Has 471 Blast hits
to 438 proteins in 92 species: Archae - 0; Bacteria - 14;
Metazoa - 217; Fungi - 43; Plants - 91; Viruses - 1; Other
Eukaryotes - 105 (source: NCBI BLink).		 0.57 0.29 -0.31
60 AT2G14560 Protein of unknown function (DUF567) LATE UPREGULATED IN RESPONSE TO
HYALOPERONOSPORA PARASITICA		 -0.57 0.32 -0.32
61 AT2G07720 transposable element gene -0.56 0.32 -0.29
62 AT5G42910 Basic-leucine zipper (bZIP) transcription factor family
protein		 -0.56 0.31 -0.31
63 AT5G28020 cysteine synthase D2 CYSTEINE SYNTHASE D2, cysteine
synthase D2		 -0.56 0.32 -0.3
64 AT3G22240 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G22235.2); Has 177 Blast hits
to 177 proteins in 14 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 177; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.56 0.33 -0.32
65 AT3G22231 pathogen and circadian controlled 1 PATHOGEN AND CIRCADIAN CONTROLLED
1		 -0.55 0.32 -0.31
66 AT4G13960 F-box/RNI-like superfamily protein -0.54 0.33 -0.29
67 AT1G08450 calreticulin 3 A. thaliana calreticulin 3,
calreticulin 3, EMS-MUTAGENIZED
BRI1 SUPPRESSOR 2, PRIORITY IN
SWEET LIFE 1		 -0.54 0.34 -0.3
68 AT5G64800 CLAVATA3/ESR-RELATED 21 CLAVATA3/ESR-RELATED 21 -0.54 0.32 -0.31
69 AT1G65630 DegP protease 3 DegP protease 3 -0.53 0.32 -0.3
70 AT1G67940 non-intrinsic ABC protein 3 ATP-binding cassette I17,
non-intrinsic ABC protein 3,
AtSTAR1, ARABIDOPSIS THALIANA
NON-INTRINSIC ABC PROTEIN 3,
non-intrinsic ABC protein 3		 -0.53 0.31 -0.32
71 AT5G17260 NAC domain containing protein 86 NAC domain containing protein 86,
NAC domain containing protein 86		 -0.52 0.31 -0.31
72 AT3G43790 zinc induced facilitator-like 2 zinc induced facilitator-like 2 -0.52 0.31 -0.3
73 AT3G56060 Glucose-methanol-choline (GMC) oxidoreductase family
protein		 -0.51 0.32 -0.33
74 AT5G11300 mitotic-like cyclin 3B from Arabidopsis CYC2BAT, mitotic-like cyclin 3B
from Arabidopsis, CYCLIN A2;2		 -0.51 0.31 -0.33
75 AT3G06360 arabinogalactan protein 27 arabinogalactan protein 27,
ARABINOGALACTAN PROTEIN 27		 -0.51 0.32 -0.31