AT3G18390 : embryo defective 1865
Query Information
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AGICode AT3G18390
Description CRS1 / YhbY (CRM) domain-containing protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G18390 CRS1 / YhbY (CRM) domain-containing protein embryo defective 1865 1 0.31 -0.33
2 AT3G04260 plastid transcriptionally active 3 PIGMENT DEFECTIVE 324, plastid
transcriptionally active 3		 0.92 0.3 -0.32
3 AT1G08520 ALBINA 1 ALB-1V, ALBINA 1, CHLD, PIGMENT
DEFECTIVE EMBRYO 166, V157		 0.92 0.33 -0.31
4 AT2G20890 photosystem II reaction center PSB29 protein photosystem II reaction center
PSB29 protein, THYLAKOID
FORMATION1		 0.9 0.32 -0.32
5 AT4G31850 proton gradient regulation 3 proton gradient regulation 3 0.9 0.32 -0.31
6 AT3G55330 PsbP-like protein 1 PsbP-like protein 1 0.89 0.34 -0.3
7 AT3G52150 RNA-binding (RRM/RBD/RNP motifs) family protein 0.89 0.31 -0.32
8 AT2G34640 plastid transcriptionally active 12 HEMERA, plastid transcriptionally
active 12		 0.88 0.31 -0.33
9 AT5G13510 Ribosomal protein L10 family protein EMBRYO DEFECTIVE 3136 0.88 0.31 -0.34
10 AT5G35630 glutamine synthetase 2 GLUTAMINE SYNTHETASE LIKE 1,
GLUTAMINE SYNTHETASE 2, glutamine
synthetase 2		 0.88 0.32 -0.31
11 AT3G15190 chloroplast 30S ribosomal protein S20, putative 0.88 0.31 -0.3
12 AT4G01050 thylakoid rhodanese-like thylakoid rhodanese-like 0.88 0.3 -0.32
13 AT1G74850 plastid transcriptionally active 2 PIGMENT DEFECTIVE 343, plastid
transcriptionally active 2		 0.88 0.32 -0.31
14 AT5G10690 pentatricopeptide (PPR) repeat-containing protein / CBS
domain-containing protein		 0.87 0.33 -0.31
15 AT4G01310 Ribosomal L5P family protein 0.87 0.32 -0.33
16 AT5G55740 Tetratricopeptide repeat (TPR)-like superfamily protein chlororespiratory reduction 21 0.87 0.3 -0.32
17 AT4G30950 fatty acid desaturase 6 fatty acid desaturase 6, FATTY
ACID DESATURASE C, STEAROYL
DESATURASE DEFICIENCY 4		 0.87 0.31 -0.3
18 AT5G49030 tRNA synthetase class I (I, L, M and V) family protein ovule abortion 2 0.87 0.32 -0.31
19 AT1G29070 Ribosomal protein L34 0.87 0.31 -0.33
20 AT5G46420 16S rRNA processing protein RimM family 0.87 0.31 -0.32
21 AT1G08550 non-photochemical quenching 1 ARABIDOPSIS VIOLAXANTHIN
DE-EPOXIDASE 1, non-photochemical
quenching 1		 0.86 0.31 -0.32
22 AT3G03710 polyribonucleotide nucleotidyltransferase, putative PIGMENT DEFECTIVE 326,
POLYNUCLEOTIDE PHOSPHORYLASE,
resistant to inhibition with FSM
10		 0.86 0.3 -0.32
23 AT5G42765 INVOLVED IN: biological_process unknown; LOCATED IN:
thylakoid, chloroplast thylakoid membrane, chloroplast;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: Twin-arginine
translocation pathway, signal sequence
(InterPro:IPR006311); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 0.86 0.3 -0.32
24 AT5G16390 chloroplastic acetylcoenzyme A carboxylase 1 BIOTIN CARBOXYL CARRIER PROTEIN,
BIOTIN CARBOXYL-CARRIER PROTEIN 1,
BIOTIN CARBOXYL-CARRIER PROTEIN 1,
chloroplastic acetylcoenzyme A
carboxylase 1, CAC1-A, CAC1A		 0.86 0.32 -0.31
25 AT1G59840 cofactor assembly of complex C cofactor assembly of complex C 0.86 0.31 -0.33
26 AT3G09210 plastid transcriptionally active 13 plastid transcriptionally active
13		 0.86 0.31 -0.32
27 AT4G21750 Homeobox-leucine zipper family protein / lipid-binding
START domain-containing protein		 MERISTEM LAYER 1 0.86 0.3 -0.32
28 AT3G25290 Auxin-responsive family protein -0.86 0.31 -0.32
29 AT1G71720 Nucleic acid-binding proteins superfamily PIGMENT DEFECTIVE 338 0.86 0.29 -0.32
30 AT1G02910 tetratricopeptide repeat (TPR)-containing protein LOW PSII ACCUMULATION1 0.85 0.31 -0.31
31 AT1G69200 fructokinase-like 2 fructokinase-like 2 0.85 0.31 -0.32
32 AT3G63490 Ribosomal protein L1p/L10e family EMBRYO DEFECTIVE 3126 0.85 0.29 -0.31
33 AT3G18110 Pentatricopeptide repeat (PPR) superfamily protein embryo defective 1270 0.84 0.32 -0.34
34 AT3G16290 AAA-type ATPase family protein embryo defective 2083 0.84 0.32 -0.34
35 AT4G04350 tRNA synthetase class I (I, L, M and V) family protein EMBRYO DEFECTIVE 2369 0.84 0.3 -0.31
36 AT2G31840 Thioredoxin superfamily protein Mesophyll-cell RNAi Library line
7-like		 0.83 0.32 -0.34
37 AT2G47940 DEGP protease 2 DEGP protease 2, EMBRYO DEFECTIVE
3117		 0.83 0.3 -0.31
38 AT3G02660 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial EMBRYO DEFECTIVE 2768 0.83 0.32 -0.32
39 AT3G04340 FtsH extracellular protease family embryo defective 2458 0.83 0.32 -0.3
40 AT3G26744 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 A. THALIANA INDUCER OF CBP
EXPRESSION 1, INDUCER OF CBF
EXPRESSION 1, SCREAM		 0.83 0.32 -0.32
41 AT1G12860 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 INDUCER OF CBF EXPRESSION 2,
SCREAM 2		 0.83 0.32 -0.33
42 AT1G51570 Calcium-dependent lipid-binding (CaLB domain) plant
phosphoribosyltransferase family protein		 0.83 0.32 -0.33
43 AT3G09270 glutathione S-transferase TAU 8 glutathione S-transferase TAU 8,
glutathione S-transferase TAU 8		 -0.79 0.3 -0.33
44 AT5G06750 Protein phosphatase 2C family protein -0.79 0.34 -0.32
45 AT1G76790 O-methyltransferase family protein indole glucosinolate
O-methyltransferase 5		 -0.78 0.31 -0.3
46 AT5G25930 Protein kinase family protein with leucine-rich repeat
domain		 -0.76 0.29 -0.32
47 AT4G39950 cytochrome P450, family 79, subfamily B, polypeptide 2 cytochrome P450, family 79,
subfamily B, polypeptide 2		 -0.76 0.29 -0.31
48 AT3G54950 patatin-like protein 6 patatin-like protein 6,
PATATIN-LIKE PROTEIN 7,
patatin-related phospholipase
IIIbeta		 -0.75 0.3 -0.33
49 AT3G12760 CONTAINS InterPro DOMAIN/s: Defective-in-cullin neddylation
protein (InterPro:IPR014764), Protein of unknown function
DUF298 (InterPro:IPR005176), UBA-like (InterPro:IPR009060);
BEST Arabidopsis thaliana protein match is: Domain of
unknown function (DUF298) (TAIR:AT1G15860.2); Has 857 Blast
hits to 855 proteins in 202 species: Archae - 0; Bacteria -
0; Metazoa - 482; Fungi - 154; Plants - 139; Viruses - 0;
Other Eukaryotes - 82 (source: NCBI BLink).		 -0.74 0.29 -0.32
50 AT5G24290 Vacuolar iron transporter (VIT) family protein -0.74 0.32 -0.3
51 AT2G47130 NAD(P)-binding Rossmann-fold superfamily protein AtSDR3, short-chain
dehydrogenase/reductase 2		 -0.74 0.3 -0.32
52 AT4G25900 Galactose mutarotase-like superfamily protein -0.73 0.29 -0.31
53 AT1G22800 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.73 0.3 -0.31
54 AT3G53810 Concanavalin A-like lectin protein kinase family protein -0.73 0.31 -0.32
55 AT3G26590 MATE efflux family protein -0.72 0.33 -0.29
56 AT1G54990 alpha/beta-Hydrolases superfamily protein AUXIN RESISTANT 4, REDUCED ROOT
GRAVITROPISM, REDUCED ROOT
GRAVITROPISM 1		 -0.71 0.3 -0.31
57 AT5G10830 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.7 0.32 -0.33
58 AT2G46150 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 -0.7 0.32 -0.3
59 AT1G75270 dehydroascorbate reductase 2 dehydroascorbate reductase 2 -0.7 0.3 -0.29
60 AT2G01650 plant UBX domain-containing protein 2 plant UBX domain-containing
protein 2		 -0.69 0.33 -0.31
61 AT2G35930 plant U-box 23 plant U-box 23 -0.68 0.31 -0.3
62 AT5G37740 Calcium-dependent lipid-binding (CaLB domain) family
protein		 -0.68 0.31 -0.3
63 AT2G36220 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G52710.1); Has 74 Blast hits
to 74 proteins in 10 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.67 0.33 -0.3
64 AT2G27310 F-box family protein -0.67 0.34 -0.3
65 AT2G33630 NAD(P)-binding Rossmann-fold superfamily protein -0.67 0.31 -0.29
66 AT2G38860 Class I glutamine amidotransferase-like superfamily protein YLS5 -0.67 0.31 -0.33
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
67 C0135 Kaempferol-hexosyl-dirhamnoside - - - -0.75 0.46 -0.46