AT3G23100 : homolog of human DNA ligase iv-binding protein XRCC4.....
Query Information
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AGICode AT3G23100
Description homolog of human DNA ligase iv-binding protein XRCC4
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G23100 homolog of human DNA ligase iv-binding protein XRCC4 homolog of human DNA ligase
iv-binding protein XRCC4		 1 0.3 -0.31
2 AT3G54500 BEST Arabidopsis thaliana protein match is: dentin
sialophosphoprotein-related (TAIR:AT5G64170.1); Has 183
Blast hits to 175 proteins in 44 species: Archae - 0;
Bacteria - 4; Metazoa - 38; Fungi - 11; Plants - 120;
Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).		 -0.66 0.31 -0.3
3 AT2G43500 Plant regulator RWP-RK family protein -0.66 0.33 -0.31
4 AT5G48780 disease resistance protein (TIR-NBS class) 0.65 0.32 -0.32
5 AT2G21850 Cysteine/Histidine-rich C1 domain family protein 0.64 0.32 -0.33
6 AT5G16270 sister chromatid cohesion 1 protein 4 ARABIDOPSIS HOMOLOG OF RAD21 3,
sister chromatid cohesion 1
protein 4		 -0.62 0.31 -0.32
7 AT1G49400 Nucleic acid-binding, OB-fold-like protein embryo defective 1129 0.62 0.32 -0.31
8 AT4G11610 C2 calcium/lipid-binding plant phosphoribosyltransferase
family protein		 0.62 0.31 -0.29
9 AT5G58870 FTSH protease 9 FTSH protease 9 -0.62 0.31 -0.31
10 AT3G20860 NIMA-related kinase 5 NIMA-related kinase 5,
NIMA-related kinase 5		 -0.61 0.3 -0.31
11 AT1G14040 EXS (ERD1/XPR1/SYG1) family protein 0.61 0.32 -0.31
12 AT5G26240 chloride channel D ATCLC-D, chloride channel D -0.61 0.34 -0.31
13 AT4G11330 MAP kinase 5 MAP kinase 5, MAP kinase 5 -0.61 0.3 -0.31
14 AT3G26560 ATP-dependent RNA helicase, putative -0.6 0.31 -0.31
15 AT1G15040 Class I glutamine amidotransferase-like superfamily protein 0.6 0.33 -0.31
16 AT5G38950 RmlC-like cupins superfamily protein -0.6 0.3 -0.3
17 AT5G44670 Domain of unknown function (DUF23) -0.6 0.31 -0.32
18 AT5G50130 NAD(P)-binding Rossmann-fold superfamily protein -0.59 0.3 -0.32
19 AT1G75490 Integrase-type DNA-binding superfamily protein 0.59 0.33 -0.32
20 AT5G58550 ETO1-like 2 ETO1-like 2 -0.59 0.31 -0.32
21 AT2G17270 phosphate transporter 3;3 phosphate transporter 3;3 -0.59 0.31 -0.33
22 AT1G17350 NADH:ubiquinone oxidoreductase intermediate-associated
protein 30		 0.59 0.32 -0.3
23 AT5G10520 ROP binding protein kinases 1 ROP binding protein kinases 1 0.58 0.33 -0.32
24 AT1G63060 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: petal, leaf whorl, male
gametophyte, flower; EXPRESSED DURING: L mature pollen
stage, M germinated pollen stage, 4 anthesis, petal
differentiation and expansion stage; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G07330.1); Has 42 Blast hits to 42 proteins in 12
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.58 0.31 -0.31
25 AT4G18820 AAA-type ATPase family protein -0.58 0.32 -0.31
26 AT1G18150 Protein kinase superfamily protein ATMPK8, MPK8 -0.58 0.29 -0.35
27 AT5G45770 receptor like protein 55 receptor like protein 55, receptor
like protein 55		 0.58 0.31 -0.33
28 AT2G37050 Leucine-rich repeat protein kinase family protein -0.58 0.32 -0.33
29 AT1G75160 Protein of unknown function (DUF620) 0.57 0.3 -0.32
30 AT3G11590 unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN:
22 plant structures; EXPRESSED DURING: 13 growth stages;
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G22310.1); Has 22320 Blast hits to 15179 proteins
in 1213 species: Archae - 372; Bacteria - 2307; Metazoa -
10906; Fungi - 1700; Plants - 1146; Viruses - 65; Other
Eukaryotes - 5824 (source: NCBI BLink).		 -0.57 0.31 -0.32
31 AT1G32810 RING/FYVE/PHD zinc finger superfamily protein -0.57 0.31 -0.31
32 AT4G30640 RNI-like superfamily protein 0.57 0.3 -0.33
33 AT5G42750 BRI1 kinase inhibitor 1 BRI1 kinase inhibitor 1 0.57 0.29 -0.32
34 AT3G56390 BEST Arabidopsis thaliana protein match is: WRKY
DNA-binding protein 55 (TAIR:AT2G40740.2); Has 12 Blast
hits to 12 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.57 0.32 -0.32
35 AT5G53240 Protein of unknown function (DUF295) 0.57 0.3 -0.31
36 AT5G37180 sucrose synthase 5 ARABIDOPSIS THALIANA SUCROSE
SYNTHASE 5, sucrose synthase 5		 -0.56 0.31 -0.33
37 AT1G48690 Auxin-responsive GH3 family protein 0.56 0.31 -0.31
38 AT4G27420 ABC-2 type transporter family protein ATP-binding cassette G9 -0.56 0.32 -0.32
39 AT4G24600 unknown protein; Has 10 Blast hits to 10 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.56 0.31 -0.32
40 AT5G61740 ABC2 homolog 14 ATP-binding cassette A10,
ARABIDOPSIS THALIANA ABC2 HOMOLOG
14, ABC2 homolog 14		 -0.56 0.31 -0.33
41 AT4G01210 glycosyl transferase family 1 protein -0.56 0.32 -0.31
42 AT3G12320 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G06980.4); Has 102 Blast hits
to 102 proteins in 16 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other
Eukaryotes - 4 (source: NCBI BLink).		 -0.56 0.32 -0.32
43 AT2G29650 phosphate transporter 4;1 anion transporter 1, phosphate
transporter 4;1		 -0.56 0.31 -0.32
44 AT2G18760 chromatin remodeling 8 chromatin remodeling 8 -0.56 0.34 -0.3
45 AT5G60460 Preprotein translocase Sec, Sec61-beta subunit protein 0.56 0.31 -0.31
46 AT3G04390 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin
binding protein		 -0.56 0.29 -0.31
47 AT1G07180 alternative NAD(P)H dehydrogenase 1 ARABIDOPSIS THALIANA INTERNAL
NON-PHOSPHORYLATING NAD ( P ) H
DEHYDROGENASE, alternative
NAD(P)H dehydrogenase 1		 -0.55 0.3 -0.31
48 AT2G10650 transposable element gene -0.55 0.32 -0.31
49 AT5G48690 CONTAINS InterPro DOMAIN/s:
Ubiquitin-associated/translation elongation factor EF1B,
N-terminal, eukaryote (InterPro:IPR015940), PUB domain
(InterPro:IPR018997), PUG domain (InterPro:IPR006567),
UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana
protein match is: ubiquitin-associated (UBA)/TS-N
domain-containing protein (TAIR:AT1G04850.1); Has 7001
Blast hits to 5165 proteins in 492 species: Archae - 9;
Bacteria - 505; Metazoa - 2653; Fungi - 905; Plants - 287;
Viruses - 19; Other Eukaryotes - 2623 (source: NCBI BLink).		 -0.55 0.29 -0.32
50 AT5G13990 exocyst subunit exo70 family protein C2 exocyst subunit exo70 family
protein C2, exocyst subunit exo70
family protein C2		 0.55 0.3 -0.29
51 AT3G03080 Zinc-binding dehydrogenase family protein -0.54 0.31 -0.32
52 AT1G08350 Endomembrane protein 70 protein family 0.54 0.32 -0.31
53 AT5G11030 aberrant lateral root formation 4 ABERRANT LATERAL ROOT FORMATION 4 0.54 0.33 -0.29
54 AT4G24250 Seven transmembrane MLO family protein MILDEW RESISTANCE LOCUS O 13,
MILDEW RESISTANCE LOCUS O 13		 -0.54 0.29 -0.3
55 AT2G14380 transposable element gene 0.54 0.33 -0.31
56 AT3G03440 ARM repeat superfamily protein -0.54 0.33 -0.32
57 AT5G50470 nuclear factor Y, subunit C7 nuclear factor Y, subunit C7 0.53 0.32 -0.31
58 AT1G50970 Membrane trafficking VPS53 family protein -0.53 0.3 -0.34
59 AT2G44110 Seven transmembrane MLO family protein MILDEW RESISTANCE LOCUS O 15,
MILDEW RESISTANCE LOCUS O 15		 0.52 0.32 -0.3
60 AT2G20400 myb-like HTH transcriptional regulator family protein -0.52 0.32 -0.34
61 AT1G72000 Plant neutral invertase family protein alkaline/neutral invertase F -0.52 0.32 -0.28
62 AT2G07280 unknown protein; Has 19 Blast hits to 19 proteins in 3
species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0;
Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.52 0.32 -0.3
63 AT1G77410 beta-galactosidase 16 beta-galactosidase 16 -0.52 0.32 -0.32
64 AT3G21290 dentin sialophosphoprotein-related -0.52 0.34 -0.33
65 AT1G08250 arogenate dehydratase 6 arogenate dehydratase 6,
Arabidopsis thaliana arogenate
dehydratase 6		 -0.52 0.31 -0.33
66 AT5G15920 structural maintenance of chromosomes 5 EMBRYO DEFECTIVE 2782, structural
maintenance of chromosomes 5		 -0.51 0.32 -0.31
67 AT1G28590 GDSL-like Lipase/Acylhydrolase superfamily protein -0.51 0.32 -0.33
68 AT5G14720 Protein kinase superfamily protein -0.51 0.3 -0.31
69 AT1G79620 Leucine-rich repeat protein kinase family protein -0.5 0.32 -0.3
70 AT3G01090 SNF1 kinase homolog 10 SNF1 kinase homolog 10, KIN10,
SNF1 kinase homolog 10,
SNF1-RELATED PROTEIN KINASE 1.1		 -0.5 0.32 -0.31
71 AT3G20090 cytochrome P450, family 705, subfamily A, polypeptide 18 cytochrome P450, family 705,
subfamily A, polypeptide 18		 0.5 0.31 -0.33
72 AT1G74900 Pentatricopeptide repeat (PPR) superfamily protein organelle transcript processing
defect 43		 -0.5 0.34 -0.31
73 AT5G35290 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.5 0.31 -0.33
74 AT3G23770 O-Glycosyl hydrolases family 17 protein 0.5 0.33 -0.32
75 AT4G01740 Cysteine/Histidine-rich C1 domain family protein 0.5 0.31 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
76 C0225 Raffinose D-(+)-Raffinose Raffinose ajugose biosynthesis II (galactinol-independent),
stachyose biosynthesis,
stachyose degradation 		-0.78 0.44 -0.44 C0225