AT3G18790 : -
Query Information
Cytoscape Web will replace the contents of this div with your graph.
AGICode AT3G18790
Description FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Isy1-like splicing (InterPro:IPR009360); Has 1147 Blast hits to 965 proteins in 236 species: Archae - 12; Bacteria - 13; Metazoa - 351; Fungi - 230; Plants - 49; Viruses - 9; Other Eukaryotes - 483 (source: NCBI BLink).
Gene information
Help   
  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G18790 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: Isy1-like
splicing (InterPro:IPR009360); Has 1147 Blast hits to 965
proteins in 236 species: Archae - 12; Bacteria - 13;
Metazoa - 351; Fungi - 230; Plants - 49; Viruses - 9; Other
Eukaryotes - 483 (source: NCBI BLink).		 1 0.34 -0.31
2 AT5G51170 unknown protein; CONTAINS InterPro DOMAIN/s:
Uncharacterised protein family UPF0406
(InterPro:IPR019146); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 -0.71 0.31 -0.3
3 AT3G58580 DNAse I-like superfamily protein 0.69 0.33 -0.31
4 AT2G35510 similar to RCD one 1 similar to RCD one 1 0.68 0.3 -0.32
5 AT1G26190 Phosphoribulokinase / Uridine kinase family 0.67 0.31 -0.32
6 AT1G49480 related to vernalization1 1 related to vernalization1 1 -0.65 0.32 -0.29
7 AT1G51610 Cation efflux family protein 0.64 0.31 -0.32
8 AT4G14300 RNA-binding (RRM/RBD/RNP motifs) family protein 0.64 0.3 -0.34
9 AT3G10070 TBP-associated factor 12 TBP-associated factor 12,
TATA-ASSOCIATED FACTOR II 58		 0.64 0.31 -0.32
10 AT2G47250 RNA helicase family protein 0.63 0.31 -0.3
11 AT5G09880 Splicing factor, CC1-like 0.63 0.31 -0.34
12 AT5G10960 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 -0.62 0.29 -0.31
13 AT2G29210 splicing factor PWI domain-containing protein 0.62 0.31 -0.32
14 AT2G45160 GRAS family transcription factor ARABIDOPSIS THALIANA HAIRY
MERISTEM 1, HAIRY MERISTEM 1, LOST
MERISTEMS 1		 0.61 0.33 -0.33
15 AT5G04330 Cytochrome P450 superfamily protein -0.61 0.31 -0.3
16 AT5G03440 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G54880.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.6 0.31 -0.32
17 AT3G52360 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: response to karrikin; LOCATED IN: endomembrane
system; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 14 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G35850.1); Has 34 Blast
hits to 34 proteins in 10 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.59 0.3 -0.33
18 AT4G21170 Tetratricopeptide repeat (TPR)-like superfamily protein 0.59 0.33 -0.3
19 AT3G17030 Nucleic acid-binding proteins superfamily 0.59 0.32 -0.32
20 AT1G55310 SC35-like splicing factor 33 SC35-LIKE SPLICING FACTOR 33,
SC35-like splicing factor 33,
SC35-LIKE SPLICING FACTOR 33,
SC35-like splicing factor 33		 -0.59 0.32 -0.31
21 AT1G02160 Cox19 family protein (CHCH motif) -0.59 0.3 -0.31
22 AT3G20720 unknown protein; Has 184 Blast hits to 181 proteins in 66
species: Archae - 0; Bacteria - 2; Metazoa - 137; Fungi -
0; Plants - 40; Viruses - 0; Other Eukaryotes - 5 (source:
NCBI BLink).		 0.59 0.29 -0.34
23 AT1G04910 O-fucosyltransferase family protein 0.59 0.3 -0.32
24 AT5G10750 Protein of unknown function (DUF1336) -0.58 0.34 -0.32
25 AT4G19660 NPR1-like protein 4 ATNPR4, NPR1-like protein 4 -0.58 0.32 -0.32
26 AT3G54480 SKP1/ASK-interacting protein 5 SKP1/ASK-interacting protein 5,
SKP5		 -0.58 0.3 -0.33
27 AT5G46070 Guanylate-binding family protein 0.58 0.32 -0.32
28 AT1G46768 related to AP2 1 related to AP2 1 0.57 0.31 -0.33
29 AT3G13370 unknown protein; Has 84 Blast hits to 50 proteins in 21
species: Archae - 0; Bacteria - 2; Metazoa - 51; Fungi - 6;
Plants - 20; Viruses - 0; Other Eukaryotes - 5 (source:
NCBI BLink).		 0.57 0.32 -0.31
30 AT1G77020 DNAJ heat shock N-terminal domain-containing protein -0.57 0.32 -0.31
31 AT5G66500 Tetratricopeptide repeat (TPR)-like superfamily protein 0.57 0.32 -0.32
32 AT5G19400 Telomerase activating protein Est1 SMG7 0.56 0.33 -0.31
33 AT1G16610 arginine/serine-rich 45 RNPS1, arginine/serine-rich 45 0.56 0.3 -0.31
34 AT2G02100 low-molecular-weight cysteine-rich 69 low-molecular-weight cysteine-rich
69, PDF2.2		 0.56 0.33 -0.31
35 AT1G52720 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G15630.1); Has 61 Blast hits
to 61 proteins in 13 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.56 0.29 -0.31
36 AT1G03560 Pentatricopeptide repeat (PPR-like) superfamily protein 0.55 0.32 -0.34
37 AT3G26540 Tetratricopeptide repeat (TPR)-like superfamily protein 0.55 0.32 -0.3
38 AT5G60800 Heavy metal transport/detoxification superfamily protein -0.55 0.32 -0.32
39 AT2G29390 sterol 4-alpha-methyl-oxidase 2-2 STEROL 4-ALPHA-METHYL-OXIDASE 2,
Arabidopsis thaliana sterol
4-alpha-methyl-oxidase 2-2, sterol
4-alpha-methyl-oxidase 2-2		 -0.54 0.29 -0.31
40 AT3G52860 unknown protein; Has 86 Blast hits to 86 proteins in 36
species: Archae - 0; Bacteria - 2; Metazoa - 41; Fungi -
13; Plants - 26; Viruses - 0; Other Eukaryotes - 4 (source:
NCBI BLink).		 -0.54 0.3 -0.34
41 AT2G32560 F-box family protein -0.54 0.31 -0.32
42 AT1G73130 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G17780.2); Has 1447 Blast hits
to 774 proteins in 215 species: Archae - 0; Bacteria - 679;
Metazoa - 377; Fungi - 171; Plants - 42; Viruses - 6; Other
Eukaryotes - 172 (source: NCBI BLink).		 0.54 0.33 -0.33
43 AT1G53990 GDSL-motif lipase 3 GDSL-motif lipase 3 -0.54 0.29 -0.33
44 AT2G01510 Tetratricopeptide repeat (TPR)-like superfamily protein 0.54 0.33 -0.3
45 AT1G63730 Disease resistance protein (TIR-NBS-LRR class) family 0.53 0.31 -0.31
46 AT4G07430 transposable element gene -0.53 0.32 -0.33
47 AT5G64660 CYS, MET, PRO, and GLY protein 2 ATCMPG2, CYS, MET, PRO, and GLY
protein 2		 -0.52 0.28 -0.32
48 AT1G65170 Ubiquitin carboxyl-terminal hydrolase family protein -0.52 0.32 -0.32
49 AT1G19770 purine permease 14 purine permease 14, purine
permease 14		 -0.5 0.32 -0.31
50 AT3G54810 Plant-specific GATA-type zinc finger transcription factor
family protein		 BLUE MICROPYLAR END 3, BLUE
MICROPYLAR END 3-ZINC FINGER, GATA
TRANSCRIPTION FACTOR 8		 -0.49 0.31 -0.35
51 AT3G32260 Nucleic acid-binding proteins superfamily -0.48 0.31 -0.32
Metabolite information
Help   
  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
52 C0013 N2-Acetyl-Ornithine N2-Acetyl-L-ornithine N-acetyl-L-ornithine arginine biosynthesis II (acetyl cycle),
ornithine biosynthesis 		0.55 0.3 -0.3 C0013