AT3G28460 : -
Query Information
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AGICode AT3G28460
Description methyltransferases
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G28460 methyltransferases 1 0.31 -0.32
2 AT3G13120 Ribosomal protein S10p/S20e family protein 0.95 0.32 -0.32
3 AT3G54210 Ribosomal protein L17 family protein 0.94 0.3 -0.32
4 AT5G11480 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.94 0.3 -0.33
5 AT2G40490 Uroporphyrinogen decarboxylase HEME2 0.94 0.33 -0.32
6 AT3G52150 RNA-binding (RRM/RBD/RNP motifs) family protein 0.94 0.3 -0.32
7 AT5G58250 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
thylakoid, chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 14 growth stages; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF2488
(InterPro:IPR019616); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
339 (source: NCBI BLink).		 EMBRYO DEFECTIVE 3143 0.93 0.31 -0.33
8 AT2G33450 Ribosomal L28 family 0.93 0.29 -0.32
9 AT1G07320 ribosomal protein L4 EMBRYO DEFECTIVE 2784, ribosomal
protein L4		 0.93 0.32 -0.3
10 AT5G14660 peptide deformylase 1B ATDEF2, DEF2, peptide deformylase
1B		 0.93 0.33 -0.31
11 AT1G68590 Ribosomal protein PSRP-3/Ycf65 0.93 0.31 -0.3
12 AT5G08280 hydroxymethylbilane synthase hydroxymethylbilane synthase 0.93 0.31 -0.32
13 AT2G26930 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase 4-(cytidine
5'-phospho)-2-C-methyl-D-erithrito
l kinase, 4-(cytidine
5'-phospho)-2-C-methyl-D-erithrito
l kinase, 4-(cytidine
5′-diphospho)-2-C-methyl-d-e
rythritol kinase, 4-(cytidine
5′-diphospho)-2-C-methyl-d-e
rythritol kinase, ISPE, PIGMENT
DEFECTIVE 277		 0.93 0.33 -0.32
14 AT2G33800 Ribosomal protein S5 family protein EMBRYO DEFECTIVE 3113 0.93 0.32 -0.32
15 AT2G35500 shikimate kinase like 2 shikimate kinase-like 2 0.92 0.31 -0.33
16 AT1G32990 plastid ribosomal protein l11 plastid ribosomal protein l11 0.92 0.3 -0.32
17 AT5G45930 magnesium chelatase i2 CHL I2, CHLI-2, magnesium
chelatase i2		 0.92 0.31 -0.3
18 AT1G48350 Ribosomal L18p/L5e family protein EMBRYO DEFECTIVE 3105 0.92 0.31 -0.3
19 AT5G14320 Ribosomal protein S13/S18 family EMBRYO DEFECTIVE 3137 0.92 0.3 -0.32
20 AT5G53490 Tetratricopeptide repeat (TPR)-like superfamily protein 0.92 0.31 -0.31
21 AT5G14910 Heavy metal transport/detoxification superfamily protein 0.91 0.31 -0.3
22 AT2G30200 catalytics;transferases;[acyl-carrier-protein]
S-malonyltransferases;binding		 EMBRYO DEFECTIVE 3147 0.91 0.32 -0.32
23 AT5G65220 Ribosomal L29 family protein 0.91 0.32 -0.33
24 AT4G09650 ATP synthase delta-subunit gene ATP synthase delta-subunit gene,
PIGMENT DEFECTIVE 332		 0.91 0.32 -0.32
25 AT1G03475 Coproporphyrinogen III oxidase ATCPO-I, HEMF1, LESION INITIATION
2		 0.91 0.31 -0.31
26 AT4G02770 photosystem I subunit D-1 photosystem I subunit D-1 0.91 0.29 -0.31
27 AT3G25920 ribosomal protein L15 ribosomal protein L15 0.91 0.3 -0.3
28 AT3G48730 glutamate-1-semialdehyde 2,1-aminomutase 2 glutamate-1-semialdehyde
2,1-aminomutase 2		 0.91 0.29 -0.33
29 AT3G15190 chloroplast 30S ribosomal protein S20, putative 0.91 0.32 -0.32
30 AT1G01970 Tetratricopeptide repeat (TPR)-like superfamily protein 0.91 0.31 -0.32
31 AT1G35680 Ribosomal protein L21 chloroplast ribosomal protein L21 0.91 0.33 -0.33
32 AT3G14930 Uroporphyrinogen decarboxylase HEME1 0.91 0.3 -0.33
33 AT1G75350 Ribosomal protein L31 embryo defective 2184 0.91 0.32 -0.29
34 AT3G08920 Rhodanese/Cell cycle control phosphatase superfamily
protein		 0.91 0.31 -0.3
35 AT1G14270 CAAX amino terminal protease family protein 0.91 0.32 -0.32
36 AT1G05190 Ribosomal protein L6 family embryo defective 2394 0.91 0.31 -0.33
37 AT2G37660 NAD(P)-binding Rossmann-fold superfamily protein 0.91 0.33 -0.31
38 AT2G42220 Rhodanese/Cell cycle control phosphatase superfamily
protein		 0.91 0.31 -0.31
39 AT4G15510 Photosystem II reaction center PsbP family protein 0.91 0.33 -0.32
40 AT3G25480 Rhodanese/Cell cycle control phosphatase superfamily
protein		 0.91 0.34 -0.31
41 AT4G39620 Tetratricopeptide repeat (TPR)-like superfamily protein A. THALIANA PENTATRICOPEPTIDE
REPEAT 5, EMBRYO DEFECTIVE 2453		 0.91 0.32 -0.32
42 AT1G64510 Translation elongation factor EF1B/ribosomal protein S6
family protein		 0.91 0.32 -0.31
43 AT5G52960 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3143 (InterPro:IPR021489);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants -
385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI
BLink).		 0.9 0.29 -0.3
44 AT2G40690 NAD-dependent glycerol-3-phosphate dehydrogenase family
protein		 GLY1, SUPPRESSOR OF FATTY ACID
DESATURASE DEFICIENCY 1		 0.9 0.34 -0.3
45 AT3G12930 Lojap-related protein 0.9 0.32 -0.31
46 AT4G18480 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 CHLORINA 42, CHLORINA 42, CHL11,
CHLI-1, CHLI1		 0.9 0.32 -0.33
47 AT4G04640 ATPase, F1 complex, gamma subunit protein ATPC1 0.9 0.32 -0.29
48 AT4G21280 photosystem II subunit QA PHOTOSYSTEM II SUBUNIT Q,
PHOTOSYSTEM II SUBUNIT Q-1,
photosystem II subunit QA		 0.9 0.31 -0.31
49 AT4G20130 plastid transcriptionally active 14 plastid transcriptionally active
14		 0.9 0.31 -0.33
50 AT1G08520 ALBINA 1 ALB-1V, ALBINA 1, CHLD, PIGMENT
DEFECTIVE EMBRYO 166, V157		 0.9 0.33 -0.32
51 AT4G11175 Nucleic acid-binding, OB-fold-like protein 0.9 0.29 -0.31
52 AT1G78630 Ribosomal protein L13 family protein embryo defective 1473 0.9 0.3 -0.32
53 AT4G37510 Ribonuclease III family protein 0.9 0.31 -0.33
54 AT2G43030 Ribosomal protein L3 family protein 0.9 0.31 -0.3
55 AT5G16140 Peptidyl-tRNA hydrolase family protein 0.9 0.33 -0.31
56 AT3G53900 uracil phosphoribosyltransferase PYRIMIDINE R, uracil
phosphoribosyltransferase		 0.9 0.32 -0.31
57 AT1G02150 Tetratricopeptide repeat (TPR)-like superfamily protein 0.9 0.3 -0.33
58 AT1G03680 thioredoxin M-type 1 thioredoxin M-type 1, ARABIDOPSIS
THIOREDOXIN M-TYPE 1, thioredoxin
M-type 1, THIOREDOXIN M-TYPE 1		 0.9 0.33 -0.32
59 AT1G14030 Rubisco methyltransferase family protein 0.9 0.32 -0.32
60 AT5G19620 outer envelope protein of 80 kDa ARABIDOPSIS THALIANA OUTER
ENVELOPE PROTEIN OF 80 KDA, EMBRYO
DEFECTIVE 213, outer envelope
protein of 80 kDa, translocon at
the outer envelope membrane of
chloroplasts 75-V		 0.9 0.31 -0.33
61 AT3G04790 Ribose 5-phosphate isomerase, type A protein EMBRYO DEFECTIVE 3119 0.89 0.33 -0.33
62 AT4G34290 SWIB/MDM2 domain superfamily protein 0.89 0.32 -0.3
63 AT3G06730 Thioredoxin z thioredoxin putative plastidic,
Thioredoxin z		 0.89 0.35 -0.32
64 AT5G16390 chloroplastic acetylcoenzyme A carboxylase 1 BIOTIN CARBOXYL CARRIER PROTEIN,
BIOTIN CARBOXYL-CARRIER PROTEIN 1,
BIOTIN CARBOXYL-CARRIER PROTEIN 1,
chloroplastic acetylcoenzyme A
carboxylase 1, CAC1-A, CAC1A		 0.89 0.31 -0.3
65 AT5G13510 Ribosomal protein L10 family protein EMBRYO DEFECTIVE 3136 0.89 0.34 -0.3
66 AT5G01590 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 60
Blast hits to 59 proteins in 31 species: Archae - 0;
Bacteria - 20; Metazoa - 1; Fungi - 2; Plants - 33; Viruses
- 0; Other Eukaryotes - 4 (source: NCBI BLink).		 0.89 0.29 -0.32
67 AT1G50900 Ankyrin repeat family protein Grana Deficient Chloroplast 1,
LHCP translocation defect		 0.89 0.29 -0.33
68 AT5G30510 ribosomal protein S1 ARRPS1, ribosomal protein S1 0.89 0.28 -0.31
69 AT3G23700 Nucleic acid-binding proteins superfamily 0.89 0.32 -0.29
70 AT3G56910 plastid-specific 50S ribosomal protein 5 plastid-specific 50S ribosomal
protein 5		 0.89 0.31 -0.31
71 AT3G04260 plastid transcriptionally active 3 PIGMENT DEFECTIVE 324, plastid
transcriptionally active 3		 0.89 0.32 -0.32
72 AT3G05600 alpha/beta-Hydrolases superfamily protein 0.89 0.3 -0.31
73 AT5G45680 FK506-binding protein 13 FK506 BINDING PROTEIN 13,
FK506-binding protein 13		 0.89 0.32 -0.33
74 AT2G33430 differentiation and greening-like 1 DIFFERENTIATION AND GREENING-LIKE,
differentiation and greening-like
1		 0.89 0.32 -0.31
75 AT1G01080 RNA-binding (RRM/RBD/RNP motifs) family protein 0.89 0.32 -0.32
76 AT1G75690 DnaJ/Hsp40 cysteine-rich domain superfamily protein LOW QUANTUM YIELD OF PHOTOSYSTEM
II 1		 0.89 0.32 -0.34
77 AT2G42070 nudix hydrolase homolog 23 ARABIDOPSIS THALIANA NUDIX
HYDROLASE HOMOLOG 23, nudix
hydrolase homolog 23, nudix
hydrolase homolog 23		 0.89 0.33 -0.31
78 AT3G56940 dicarboxylate diiron protein, putative (Crd1) ACSF, CHL27, COPPER RESPONSE
DEFECT 1		 0.89 0.31 -0.31
79 AT3G20230 Ribosomal L18p/L5e family protein 0.89 0.31 -0.29
80 AT2G18710 SECY homolog 1 SECY homolog 1 0.89 0.33 -0.3
81 AT5G52970 thylakoid lumen 15.0 kDa protein 0.89 0.31 -0.33
82 AT1G79850 ribosomal protein S17 CS17, PIGMENT DEFECTIVE 347,
PLASTID RIBOSOMAL SMALL SUBUNIT
PROTEIN 17, ribosomal protein S17		 0.89 0.32 -0.3
83 AT5G06290 2-cysteine peroxiredoxin B 2-cysteine peroxiredoxin B, 2-CYS
PEROXIREDOXIN B		 0.88 0.33 -0.31
84 AT5G47190 Ribosomal protein L19 family protein 0.88 0.31 -0.33
85 AT1G78180 Mitochondrial substrate carrier family protein 0.88 0.32 -0.33
86 AT1G22700 Tetratricopeptide repeat (TPR)-like superfamily protein 0.88 0.3 -0.31
87 AT4G20130 plastid transcriptionally active 14 plastid transcriptionally active
14		 0.88 0.32 -0.31
88 AT3G63170 Chalcone-flavanone isomerase family protein 0.88 0.31 -0.33
89 AT4G20360 RAB GTPase homolog E1B ATRAB8D, RAB GTPase homolog E1B,
RAB GTPase homolog E1B		 0.88 0.31 -0.32
90 AT4G26370 antitermination NusB domain-containing protein 0.88 0.32 -0.28
91 AT4G39040 RNA-binding CRS1 / YhbY (CRM) domain protein 0.88 0.31 -0.31
92 AT1G02280 translocon at the outer envelope membrane of chloroplasts
33		 ATTOC33, PLASTID PROTEIN IMPORT 1,
translocon at the outer envelope
membrane of chloroplasts 33		 0.88 0.32 -0.32
93 AT1G32550 2Fe-2S ferredoxin-like superfamily protein ferredoxin C 1 0.88 0.29 -0.33
94 AT2G38140 plastid-specific ribosomal protein 4 plastid-specific ribosomal protein
4		 0.88 0.32 -0.33
95 AT5G22340 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 58 Blast hits to 58 proteins
in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 57; Viruses - 0; Other Eukaryotes - 1
(source: NCBI BLink).		 0.88 0.32 -0.31
96 AT4G01050 thylakoid rhodanese-like thylakoid rhodanese-like 0.88 0.32 -0.3
97 AT4G30620 Uncharacterised BCR, YbaB family COG0718 0.88 0.3 -0.3
98 AT5G54180 plastid transcriptionally active 15 plastid transcriptionally active
15		 0.88 0.33 -0.32
99 AT1G60990 Glycine cleavage T-protein family 0.88 0.3 -0.31
100 AT5G54270 light-harvesting chlorophyll B-binding protein 3 light-harvesting chlorophyll
B-binding protein 3, LHCB3*1		 0.88 0.32 -0.34
101 AT1G67740 photosystem II BY photosystem II BY, YCF32 0.88 0.3 -0.33
102 AT4G18360 Aldolase-type TIM barrel family protein -0.81 0.31 -0.3
103 AT3G25290 Auxin-responsive family protein -0.8 0.32 -0.31
104 AT1G02850 beta glucosidase 11 beta glucosidase 11 -0.79 0.32 -0.35
105 AT5G44790 copper-exporting ATPase / responsive-to-antagonist 1 /
copper-transporting ATPase (RAN1)		 HMA7, RESPONSIVE-TO-ANTAGONIST 1 -0.79 0.32 -0.31
106 AT5G47050 SBP (S-ribonuclease binding protein) family protein -0.78 0.31 -0.32
107 AT5G06750 Protein phosphatase 2C family protein -0.78 0.32 -0.28
108 AT3G25610 ATPase E1-E2 type family protein / haloacid
dehalogenase-like hydrolase family protein		 -0.78 0.31 -0.31
109 AT1G63460 glutathione peroxidase 8 ATGPX8, glutathione peroxidase 8 -0.76 0.31 -0.31
110 AT5G18310 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G48500.1); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.76 0.31 -0.31
111 AT5G50760 SAUR-like auxin-responsive protein family -0.76 0.31 -0.31
112 AT5G15730 Protein kinase superfamily protein AtCRLK2,
calcium/calmodulin-regulated
receptor-like kinase 2		 -0.75 0.29 -0.3
113 AT3G57380 Glycosyltransferase family 61 protein -0.75 0.33 -0.3
114 AT3G28850 Glutaredoxin family protein -0.75 0.3 -0.32
115 AT5G58730 pfkB-like carbohydrate kinase family protein -0.74 0.34 -0.34
116 AT5G24290 Vacuolar iron transporter (VIT) family protein -0.74 0.3 -0.32
117 AT2G34500 cytochrome P450, family 710, subfamily A, polypeptide 1 cytochrome P450, family 710,
subfamily A, polypeptide 1		 -0.74 0.29 -0.3
118 AT3G08720 serine/threonine protein kinase 2 Arabidopsis thaliana protein
kinase 19, ARABIDOPSIS THALIANA
PROTEIN KINASE 2, ARABIDOPSIS
THALIANA SERINE/THREONINE PROTEIN
KINASE 2, serine/threonine protein
kinase 2		 -0.72 0.31 -0.3
119 AT2G35980 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 ARABIDOPSIS NDR1/HIN1-LIKE 10,
NDR1/HIN1-LIKE,
YELLOW-LEAF-SPECIFIC GENE 9		 -0.72 0.31 -0.31
120 AT3G25250 AGC (cAMP-dependent, cGMP-dependent and protein kinase C)
kinase family protein		 AGC2, AGC2-1, AtOXI1, oxidative
signal-inducible1		 -0.72 0.31 -0.3
121 AT5G59490 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 -0.72 0.31 -0.36
122 AT1G69526 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.71 0.33 -0.31
123 AT3G49350 Ypt/Rab-GAP domain of gyp1p superfamily protein -0.7 0.33 -0.31