AT3G25480 : -
Query Information
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AGICode AT3G25480
Description Rhodanese/Cell cycle control phosphatase superfamily protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G25480 Rhodanese/Cell cycle control phosphatase superfamily
protein		 1 0.3 -0.32
2 AT2G33450 Ribosomal L28 family 0.94 0.33 -0.29
3 AT5G14320 Ribosomal protein S13/S18 family EMBRYO DEFECTIVE 3137 0.93 0.31 -0.32
4 AT3G54210 Ribosomal protein L17 family protein 0.92 0.34 -0.31
5 AT2G35500 shikimate kinase like 2 shikimate kinase-like 2 0.92 0.33 -0.31
6 AT5G14910 Heavy metal transport/detoxification superfamily protein 0.92 0.33 -0.32
7 AT3G12930 Lojap-related protein 0.92 0.32 -0.32
8 AT5G11450 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP
family protein		 PsbP domain protein 5 0.92 0.32 -0.33
9 AT4G11175 Nucleic acid-binding, OB-fold-like protein 0.92 0.3 -0.3
10 AT1G78630 Ribosomal protein L13 family protein embryo defective 1473 0.92 0.33 -0.32
11 AT3G28460 methyltransferases 0.91 0.34 -0.33
12 AT5G65220 Ribosomal L29 family protein 0.91 0.31 -0.32
13 AT3G25920 ribosomal protein L15 ribosomal protein L15 0.91 0.3 -0.32
14 AT3G48730 glutamate-1-semialdehyde 2,1-aminomutase 2 glutamate-1-semialdehyde
2,1-aminomutase 2		 0.91 0.31 -0.32
15 AT3G56910 plastid-specific 50S ribosomal protein 5 plastid-specific 50S ribosomal
protein 5		 0.91 0.31 -0.33
16 AT3G15190 chloroplast 30S ribosomal protein S20, putative 0.91 0.32 -0.31
17 AT2G38140 plastid-specific ribosomal protein 4 plastid-specific ribosomal protein
4		 0.91 0.33 -0.31
18 AT1G14270 CAAX amino terminal protease family protein 0.91 0.34 -0.3
19 AT3G52150 RNA-binding (RRM/RBD/RNP motifs) family protein 0.91 0.31 -0.32
20 AT5G52960 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3143 (InterPro:IPR021489);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants -
385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI
BLink).		 0.9 0.32 -0.3
21 AT5G58250 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
thylakoid, chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 14 growth stages; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF2488
(InterPro:IPR019616); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
339 (source: NCBI BLink).		 EMBRYO DEFECTIVE 3143 0.9 0.31 -0.32
22 AT1G32990 plastid ribosomal protein l11 plastid ribosomal protein l11 0.9 0.34 -0.32
23 AT4G39460 S-adenosylmethionine carrier 1 S-adenosylmethionine carrier 1,
SAM TRANSPORTER1		 0.9 0.3 -0.31
24 AT5G14660 peptide deformylase 1B ATDEF2, DEF2, peptide deformylase
1B		 0.9 0.31 -0.31
25 AT1G48350 Ribosomal L18p/L5e family protein EMBRYO DEFECTIVE 3105 0.9 0.32 -0.33
26 AT5G22340 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 58 Blast hits to 58 proteins
in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 57; Viruses - 0; Other Eukaryotes - 1
(source: NCBI BLink).		 0.9 0.31 -0.31
27 AT5G08280 hydroxymethylbilane synthase hydroxymethylbilane synthase 0.9 0.31 -0.31
28 AT4G37510 Ribonuclease III family protein 0.9 0.31 -0.32
29 AT1G02150 Tetratricopeptide repeat (TPR)-like superfamily protein 0.9 0.32 -0.32
30 AT1G64510 Translation elongation factor EF1B/ribosomal protein S6
family protein		 0.9 0.33 -0.29
31 AT2G45270 glycoprotease 1 glycoprotease 1 0.89 0.32 -0.29
32 AT5G11480 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.89 0.32 -0.3
33 AT3G27750 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12
growth stages; BEST Arabidopsis thaliana protein match is:
Vacuolar sorting protein 9 (VPS9) domain
(TAIR:AT5G09320.1); Has 106 Blast hits to 106 proteins in
16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
4; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 EMBRYO DEFECTIVE 3123 0.89 0.3 -0.31
34 AT5G13510 Ribosomal protein L10 family protein EMBRYO DEFECTIVE 3136 0.89 0.31 -0.33
35 AT5G30510 ribosomal protein S1 ARRPS1, ribosomal protein S1 0.89 0.3 -0.32
36 AT4G20130 plastid transcriptionally active 14 plastid transcriptionally active
14		 0.89 0.3 -0.31
37 AT4G17560 Ribosomal protein L19 family protein 0.89 0.31 -0.32
38 AT2G43030 Ribosomal protein L3 family protein 0.89 0.32 -0.3
39 AT3G20230 Ribosomal L18p/L5e family protein 0.89 0.3 -0.34
40 AT5G16140 Peptidyl-tRNA hydrolase family protein 0.89 0.31 -0.33
41 AT5G54600 Translation protein SH3-like family protein 0.89 0.32 -0.32
42 AT2G37220 RNA-binding (RRM/RBD/RNP motifs) family protein 0.89 0.31 -0.32
43 AT4G01310 Ribosomal L5P family protein 0.88 0.31 -0.29
44 AT2G47940 DEGP protease 2 DEGP protease 2, EMBRYO DEFECTIVE
3117		 0.88 0.3 -0.33
45 AT3G06730 Thioredoxin z thioredoxin putative plastidic,
Thioredoxin z		 0.88 0.34 -0.31
46 AT1G02910 tetratricopeptide repeat (TPR)-containing protein LOW PSII ACCUMULATION1 0.88 0.3 -0.3
47 AT1G36390 Co-chaperone GrpE family protein 0.88 0.32 -0.32
48 AT5G47190 Ribosomal protein L19 family protein 0.88 0.31 -0.3
49 AT5G01590 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 60
Blast hits to 59 proteins in 31 species: Archae - 0;
Bacteria - 20; Metazoa - 1; Fungi - 2; Plants - 33; Viruses
- 0; Other Eukaryotes - 4 (source: NCBI BLink).		 0.88 0.3 -0.33
50 AT3G47650 DnaJ/Hsp40 cysteine-rich domain superfamily protein 0.88 0.31 -0.34
51 AT2G33430 differentiation and greening-like 1 DIFFERENTIATION AND GREENING-LIKE,
differentiation and greening-like
1		 0.88 0.32 -0.29
52 AT3G62030 rotamase CYP 4 cyclophilin 20-3, rotamase CYP 4 0.88 0.33 -0.29
53 AT3G60370 FKBP-like peptidyl-prolyl cis-trans isomerase family
protein		 0.88 0.31 -0.3
54 AT3G14930 Uroporphyrinogen decarboxylase HEME1 0.88 0.3 -0.3
55 AT1G29070 Ribosomal protein L34 0.88 0.29 -0.32
56 AT1G79850 ribosomal protein S17 CS17, PIGMENT DEFECTIVE 347,
PLASTID RIBOSOMAL SMALL SUBUNIT
PROTEIN 17, ribosomal protein S17		 0.88 0.31 -0.32
57 AT1G06190 Rho termination factor 0.87 0.32 -0.32
58 AT4G34290 SWIB/MDM2 domain superfamily protein 0.87 0.31 -0.29
59 AT5G50250 chloroplast RNA-binding protein 31B chloroplast RNA-binding protein
31B		 0.87 0.31 -0.32
60 AT2G48070 resistance to phytophthora 1 RESISTANCE TO PHYTOPHTHORA 1 0.87 0.33 -0.31
61 AT5G52520 Class II aaRS and biotin synthetases superfamily protein OVULE ABORTION 6, PROLYL-TRNA
SYNTHETASE 1		 0.87 0.31 -0.28
62 AT1G63610 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G14910.1); Has 537 Blast
hits to 411 proteins in 100 species: Archae - 0; Bacteria -
231; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0;
Other Eukaryotes - 212 (source: NCBI BLink).		 0.87 0.31 -0.34
63 AT1G59840 cofactor assembly of complex C cofactor assembly of complex C 0.87 0.32 -0.31
64 AT1G13270 methionine aminopeptidase 1B METHIONINE AMINOPEPTIDASE 1B,
methionine aminopeptidase 1B		 0.87 0.3 -0.32
65 AT2G30695 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
protein folding, protein transport; LOCATED IN: chloroplast
stroma, chloroplast; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: Trigger factor, ribosome-binding, bacterial
(InterPro:IPR008881); Has 253 Blast hits to 253 proteins in
72 species: Archae - 0; Bacteria - 138; Metazoa - 0; Fungi
- 0; Plants - 40; Viruses - 0; Other Eukaryotes - 75
(source: NCBI BLink).		 0.87 0.33 -0.32
66 AT4G20360 RAB GTPase homolog E1B ATRAB8D, RAB GTPase homolog E1B,
RAB GTPase homolog E1B		 0.87 0.31 -0.32
67 AT4G34620 small subunit ribosomal protein 16 small subunit ribosomal protein 16 0.87 0.29 -0.32
68 AT1G75350 Ribosomal protein L31 embryo defective 2184 0.87 0.31 -0.31
69 AT4G24770 31-kDa RNA binding protein ARABIDOPSIS THALIANA RNA BINDING
PROTEIN, APPROXIMATELY 31 KD,
ATRBP33, CP31, 31-kDa RNA binding
protein		 0.87 0.31 -0.31
70 AT3G63410 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 ALBINO OR PALE GREEN MUTANT 1,
E37, INNER ENVELOPE PROTEIN 37,
VITAMIN E DEFECTIVE 3		 0.87 0.32 -0.33
71 AT5G46420 16S rRNA processing protein RimM family 0.87 0.33 -0.31
72 AT1G32200 phospholipid/glycerol acyltransferase family protein ACYLTRANSFERASE 1, ATS1 0.86 0.31 -0.34
73 AT1G04420 NAD(P)-linked oxidoreductase superfamily protein 0.86 0.34 -0.33
74 AT5G63310 nucleoside diphosphate kinase 2 ARABIDOPSIS NUCLEOSIDE DIPHOSPHATE
KINASE 2, NUCLEOSIDE DIPHOSPHATE
KINASE IA, NDPK IA IA, NDP KINASE
1A, nucleoside diphosphate kinase
2		 0.86 0.34 -0.28
75 AT1G62780 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 14 growth stages; Has 94
Blast hits to 94 proteins in 35 species: Archae - 6;
Bacteria - 10; Metazoa - 21; Fungi - 2; Plants - 48;
Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).		 0.86 0.31 -0.3
76 AT4G16390 pentatricopeptide (PPR) repeat-containing protein suppressor of variegation 7 0.86 0.32 -0.32
77 AT5G63050 embryo defective 2759 embryo defective 2759 0.86 0.34 -0.31
78 AT5G51100 Fe superoxide dismutase 2 Fe superoxide dismutase 2 0.86 0.3 -0.28
79 AT2G21280 NAD(P)-binding Rossmann-fold superfamily protein ATSULA, GIANT CHLOROPLAST 1, SULA 0.86 0.32 -0.31
80 AT3G08740 elongation factor P (EF-P) family protein 0.85 0.33 -0.32
81 AT3G24590 plastidic type i signal peptidase 1 plastidic type i signal peptidase
1		 0.85 0.31 -0.31
82 AT3G19810 Protein of unknown function (DUF177) 0.85 0.31 -0.3
83 AT1G22700 Tetratricopeptide repeat (TPR)-like superfamily protein 0.85 0.32 -0.3
84 AT5G23310 Fe superoxide dismutase 3 Fe superoxide dismutase 3 0.85 0.32 -0.32
85 AT2G35410 RNA-binding (RRM/RBD/RNP motifs) family protein 0.85 0.35 -0.32
86 AT3G56010 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 25
Blast hits to 25 proteins in 12 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.85 0.29 -0.32
87 AT3G52960 Thioredoxin superfamily protein 0.85 0.31 -0.29
88 AT2G26550 heme oxygenase 2 heme oxygenase 2 0.85 0.32 -0.31
89 AT3G63190 ribosome recycling factor, chloroplast precursor Arabidopsis thaliana chloroplast
ribosome recycling factor,
chloroplast ribosome recycling
factor, HIGH CHLOROPHYLL
FLUORESCENCE AND PALE GREEN MUTANT
108, ribosome recycling factor,
chloroplast precursor		 0.85 0.29 -0.33
90 AT5G54180 plastid transcriptionally active 15 plastid transcriptionally active
15		 0.85 0.31 -0.3
91 AT2G47130 NAD(P)-binding Rossmann-fold superfamily protein AtSDR3, short-chain
dehydrogenase/reductase 2		 -0.73 0.32 -0.33
92 AT3G61850 Dof-type zinc finger DNA-binding family protein dof affecting germination 1 -0.71 0.33 -0.29
93 AT5G49880 mitotic checkpoint family protein -0.7 0.33 -0.35
94 AT3G49350 Ypt/Rab-GAP domain of gyp1p superfamily protein -0.67 0.32 -0.31
95 AT4G13235 embryo sac development arrest 21 embryo sac development arrest 21 -0.67 0.32 -0.33
96 AT3G21710 unknown protein; Has 42 Blast hits to 42 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.66 0.3 -0.33
97 AT5G59530 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.64 0.33 -0.33
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
98 C0051 Aconitic acid cis-Aconitic acid cis-Aconitate glutamine biosynthesis III,
TCA cycle variation V (plant),
glyoxylate cycle,
TCA cycle variation III (eukaryotic) 		-0.79 0.47 -0.41 C0051