AT3G20840 : PLETHORA 1
Query Information
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AGICode AT3G20840
Description Integrase-type DNA-binding superfamily protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G20840 Integrase-type DNA-binding superfamily protein PLETHORA 1 1 0.31 -0.32
2 AT4G02090 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; EXPRESSED IN: root; Has 132
Blast hits to 132 proteins in 12 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 132; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.71 0.32 -0.32
3 AT5G18100 copper/zinc superoxide dismutase 3 copper/zinc superoxide dismutase 3 -0.69 0.31 -0.3
4 AT3G22620 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 0.68 0.32 -0.31
5 AT2G01220 Nucleotidylyl transferase superfamily protein -0.68 0.31 -0.32
6 AT3G50640 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G66800.1); Has 67 Blast hits
to 67 proteins in 10 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.68 0.31 -0.29
7 AT1G17060 cytochrome p450 72c1 CHIBI 2, cytochrome p450 72c1,
SHRINK 1, SUPPRESSOR OF PHYB-4 7		 0.68 0.3 -0.31
8 AT1G08490 chloroplastic NIFS-like cysteine desulfurase ATCPNIFS, ATNFS2, ATSUFS,
chloroplastic NIFS-like cysteine
desulfurase, SUFS		 -0.67 0.31 -0.34
9 AT1G53830 pectin methylesterase 2 pectin methylesterase 2, pectin
methylesterase 2		 0.67 0.31 -0.32
10 AT2G04700 ferredoxin thioredoxin reductase catalytic beta chain
family protein		 -0.67 0.33 -0.33
11 AT3G22600 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 0.67 0.32 -0.32
12 AT3G58140 phenylalanyl-tRNA synthetase class IIc family protein -0.66 0.34 -0.31
13 AT4G21860 methionine sulfoxide reductase B 2 methionine sulfoxide reductase B 2 -0.66 0.3 -0.33
14 AT1G32160 Protein of unknown function (DUF760) -0.65 0.31 -0.31
15 AT5G20550 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 0.65 0.31 -0.33
16 AT2G15290 translocon at inner membrane of chloroplasts 21 TRANSLOCON AT INNER MEMBRANE OF
CHLOROPLASTS 21, CHLOROPLAST
IMPORT APPARATUS 5, PERMEASE IN
CHLOROPLASTS 1, translocon at
inner membrane of chloroplasts 21		 -0.65 0.31 -0.34
17 AT5G05960 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 0.64 0.32 -0.29
18 AT5G19410 ABC-2 type transporter family protein ATP-binding cassette G23 0.64 0.31 -0.29
19 AT2G30150 UDP-Glycosyltransferase superfamily protein -0.64 0.3 -0.34
20 AT1G73990 signal peptide peptidase signal peptide peptidase, SPPA1 -0.64 0.33 -0.33
21 AT2G41660 Protein of unknown function, DUF617 mizu-kussei 1 0.64 0.3 -0.32
22 AT1G01320 Tetratricopeptide repeat (TPR)-like superfamily protein -0.63 0.33 -0.32
23 AT4G36610 alpha/beta-Hydrolases superfamily protein 0.63 0.32 -0.3
24 AT4G17350 Plant protein of unknown function (DUF828) with plant
pleckstrin homology-like region		 0.63 0.31 -0.32
25 AT3G25410 Sodium Bile acid symporter family -0.63 0.31 -0.33
26 AT2G04480 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G35870.1); Has 38 Blast hits
to 38 proteins in 9 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.63 0.33 -0.31
27 AT1G23360 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 MENG -0.62 0.3 -0.33
28 AT1G73160 UDP-Glycosyltransferase superfamily protein 0.62 0.31 -0.31
29 AT3G09150 phytochromobilin:ferredoxin oxidoreductase, chloroplast /
phytochromobilin synthase (HY2)		 ARABIDOPSIS ELONGATED HYPOCOTYL 2,
GENOMES UNCOUPLED 3, ELONGATED
HYPOCOTYL 2		 -0.62 0.32 -0.33
30 AT1G28100 unknown protein; Has 64 Blast hits to 64 proteins in 27
species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 6;
Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 -0.62 0.32 -0.31
31 AT2G46090 Diacylglycerol kinase family protein -0.62 0.32 -0.32
32 AT5G50860 Protein kinase superfamily protein -0.62 0.31 -0.35
33 AT4G38020 tRNA/rRNA methyltransferase (SpoU) family protein -0.62 0.31 -0.32
34 AT4G18290 potassium channel in Arabidopsis thaliana 2 potassium channel in Arabidopsis
thaliana 2		 -0.62 0.35 -0.29
35 AT5G45390 CLP protease P4 CLP protease P4, NUCLEAR-ENCODED
CLP PROTEASE P4		 -0.62 0.31 -0.31
36 AT3G28970 Domain of unknown function (DUF298) antiauxin-resistant 3 -0.62 0.31 -0.33
37 AT4G01630 expansin A17 EXPANSIN 17, expansin A17, ATHEXP
ALPHA 1.13, expansin A17		 0.62 0.32 -0.31
38 AT1G71870 MATE efflux family protein 0.62 0.31 -0.3
39 AT2G25830 YebC-related -0.62 0.31 -0.32
40 AT1G47480 alpha/beta-Hydrolases superfamily protein 0.61 0.3 -0.3
41 AT5G60600 4-hydroxy-3-methylbut-2-enyl diphosphate synthase CHLOROPLAST BIOGENESIS 4,
CONSTITUTIVE SUBTILISIN 3, GCPE,
4-hydroxy-3-methylbut-2-enyl
diphosphate synthase, ISPG		 -0.61 0.32 -0.31
42 AT3G50790 esterase/lipase/thioesterase family protein -0.61 0.33 -0.32
43 AT2G25520 Drug/metabolite transporter superfamily protein 0.61 0.29 -0.31
44 AT3G30350 Encodes a root meristem growth factor (RGF). Belongs to a
family of functionally redundant homologous peptides that
are secreted, tyrosine-sulfated, and expressed mainly in
the stem cell area and the innermost layer of central
columella cells. RGFs are required for maintenance of the
root stem cell niche and transit amplifying cell
proliferation. Members of this family include: At5g60810
(RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350
(RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240
(RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).		 root meristem growth factor 4 0.61 0.3 -0.34
45 AT3G47390 cytidine/deoxycytidylate deaminase family protein PHOTOSENSITIVE 1 -0.61 0.31 -0.32
46 AT5G03420 5'-AMP-activated protein kinase-related -0.6 0.33 -0.31
47 AT3G28920 homeobox protein 34 homeobox protein 34, homeobox
protein 34, ZINC FINGER
HOMEODOMAIN 9		 -0.6 0.3 -0.3
48 AT3G29230 Tetratricopeptide repeat (TPR)-like superfamily protein -0.6 0.32 -0.31
49 AT2G21100 Disease resistance-responsive (dirigent-like protein)
family protein		 0.6 0.3 -0.32
50 AT1G12410 CLP protease proteolytic subunit 2 CLP protease proteolytic subunit
2, CLPR2, EMBRYO DEFECTIVE 3146,
NUCLEAR-ENCODED CLP PROTEASE P2		 -0.6 0.31 -0.31
51 ATCG00540 photosynthetic electron transfer A photosynthetic electron transfer A -0.6 0.32 -0.31
52 AT4G17280 Auxin-responsive family protein 0.6 0.3 -0.33
53 AT1G53230 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor
3		 TEOSINTE BRANCHED 1, cycloidea and
PCF transcription factor 3		 -0.59 0.3 -0.34
54 AT3G05350 Metallopeptidase M24 family protein -0.59 0.31 -0.31
55 AT1G50840 polymerase gamma 2 polymerase gamma 2, polymerase I A -0.59 0.34 -0.32
56 AT5G03430 phosphoadenosine phosphosulfate (PAPS) reductase family
protein		 -0.59 0.31 -0.3
57 AT1G31410 putrescine-binding periplasmic protein-related -0.59 0.31 -0.34
58 AT4G37200 Thioredoxin superfamily protein HIGH CHLOROPHYLL FLUORESCENCE 164 -0.59 0.33 -0.3
59 AT1G31800 cytochrome P450, family 97, subfamily A, polypeptide 3 cytochrome P450, family 97,
subfamily A, polypeptide 3, LUTEIN
DEFICIENT 5		 -0.58 0.31 -0.31
60 AT5G52560 UDP-sugar pyrophosphorylase UDP-sugar pyrophosphorylase,
UDP-sugar pyrophosphorylase		 -0.58 0.3 -0.3
61 AT5G41040 HXXXD-type acyl-transferase family protein 0.58 0.31 -0.33
62 AT4G28025 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.58 0.3 -0.33
63 AT4G36910 Cystathionine beta-synthase (CBS) family protein CBS domain containing protein 1,
CYSTATHIONE [BETA]-SYNTHASE
DOMAIN-CONTAINING PROTEIN 2, LOSS
OF THE TIMING OF ET AND JA
BIOSYNTHESIS 2		 -0.58 0.3 -0.32
64 AT1G28130 Auxin-responsive GH3 family protein GH3.17 0.58 0.32 -0.32
65 AT5G57850 D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily protein		 -0.58 0.32 -0.33
66 AT3G15160 unknown protein; Has 266 Blast hits to 264 proteins in 44
species: Archae - 0; Bacteria - 0; Metazoa - 58; Fungi - 0;
Plants - 199; Viruses - 0; Other Eukaryotes - 9 (source:
NCBI BLink).		 -0.57 0.36 -0.34
67 AT3G23310 AGC (cAMP-dependent, cGMP-dependent and protein kinase C)
kinase family protein		 -0.57 0.3 -0.32
68 AT1G65070 DNA mismatch repair protein MutS, type 2 -0.57 0.32 -0.3
69 AT3G15900 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; Has 26 Blast hits to 26 proteins
in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 -0.57 0.3 -0.31
70 AT5G13050 5-formyltetrahydrofolate cycloligase 5-formyltetrahydrofolate
cycloligase		 -0.57 0.33 -0.3
71 AT5G59610 Chaperone DnaJ-domain superfamily protein -0.57 0.32 -0.32
72 AT3G09310 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF37 (InterPro:IPR002696); Has 5781 Blast
hits to 5781 proteins in 1903 species: Archae - 0; Bacteria
- 3956; Metazoa - 2; Fungi - 0; Plants - 42; Viruses - 3;
Other Eukaryotes - 1778 (source: NCBI BLink).		 -0.57 0.32 -0.32
73 AT3G20670 histone H2A 13 histone H2A 13 -0.57 0.31 -0.29
74 AT2G15380 transposable element gene -0.57 0.32 -0.31
75 AT1G21350 Thioredoxin superfamily protein -0.57 0.34 -0.34
76 AT1G02560 nuclear encoded CLP protease 5 nuclear encoded CLP protease 5,
NUCLEAR-ENCODED CLPP 1, NUCLEAR
CLPP 5		 -0.57 0.32 -0.29
77 AT4G14070 acyl-activating enzyme 15 acyl-activating enzyme 15 -0.57 0.33 -0.34
78 AT2G35360 ubiquitin family protein -0.57 0.33 -0.33
79 AT3G10230 lycopene cyclase AtLCY, lycopene cyclase -0.56 0.31 -0.32
80 AT1G05280 Protein of unknown function (DUF604) 0.56 0.31 -0.32
81 AT1G28090 Polynucleotide adenylyltransferase family protein -0.56 0.33 -0.3
82 AT3G10010 demeter-like 2 demeter-like 2 -0.56 0.31 -0.34
83 AT3G50300 HXXXD-type acyl-transferase family protein 0.56 0.34 -0.35
84 AT3G45530 Cysteine/Histidine-rich C1 domain family protein 0.56 0.3 -0.32
85 AT2G30950 FtsH extracellular protease family FTSH2, VARIEGATED 2 -0.56 0.32 -0.34
86 AT5G02670 BEST Arabidopsis thaliana protein match is: poly(A)
polymerase 3 (TAIR:AT3G06560.1); Has 14 Blast hits to 8
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.56 0.33 -0.31
87 AT1G22430 GroES-like zinc-binding dehydrogenase family protein -0.56 0.3 -0.31
88 AT3G25640 Protein of unknown function, DUF617 0.56 0.31 -0.33
89 AT1G32360 Zinc finger (CCCH-type) family protein -0.56 0.32 -0.31
90 AT5G66090 unknown protein; FUNCTIONS IN: molecular_function unknown;
LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN:
21 plant structures; EXPRESSED DURING: 13 growth stages;
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
(source: NCBI BLink).		 -0.56 0.31 -0.33
91 AT2G39080 NAD(P)-binding Rossmann-fold superfamily protein EMBRYO DEFECTIVE 2799 -0.56 0.3 -0.3
92 AT1G04950 TATA BOX ASSOCIATED FACTOR II 59 ATTAF6, EMBRYO DEFECTIVE 2781,
TBP-associated factor 6, TATA BOX
ASSOCIATED FACTOR II 59		 -0.56 0.3 -0.31
93 AT1G69050 unknown protein; Has 9 Blast hits to 9 proteins in 4
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.55 0.31 -0.31
94 AT4G36430 Peroxidase superfamily protein 0.55 0.31 -0.3
95 AT3G55090 ABC-2 type transporter family protein ATP-binding cassette G16 0.54 0.3 -0.35
96 AT1G17430 alpha/beta-Hydrolases superfamily protein 0.54 0.31 -0.3
97 AT1G55430 Cysteine/Histidine-rich C1 domain family protein 0.54 0.31 -0.34
98 AT4G14695 Uncharacterised protein family (UPF0041) 0.54 0.31 -0.31
99 AT5G35580 Protein kinase superfamily protein 0.54 0.3 -0.32