AT3G25900 : ATHMT-1
Query Information
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AGICode AT3G25900
Description Homocysteine S-methyltransferase family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G25900 Homocysteine S-methyltransferase family protein ATHMT-1, HMT-1 1 0.31 -0.33
2 AT3G22360 alternative oxidase 1B alternative oxidase 1B 0.78 0.33 -0.32
3 AT2G46140 Late embryogenesis abundant protein 0.75 0.33 -0.31
4 AT1G26820 ribonuclease 3 ribonuclease 3 0.72 0.33 -0.31
5 AT4G25980 Peroxidase superfamily protein -0.72 0.3 -0.34
6 AT4G15120 VQ motif-containing protein 0.72 0.3 -0.32
7 AT5G16510 Alpha-1,4-glucan-protein synthase family protein reversibly glycosylated
polypeptide 5, reversibly
glycosylated protein 5		 0.71 0.31 -0.32
8 AT1G12740 cytochrome P450, family 87, subfamily A, polypeptide 2 cytochrome P450, family 87,
subfamily A, polypeptide 2		 0.71 0.3 -0.31
9 AT3G43190 sucrose synthase 4 ARABIDOPSIS THALIANA SUCROSE
SYNTHASE 4, sucrose synthase 4		 0.71 0.31 -0.33
10 AT1G77120 alcohol dehydrogenase 1 ALCOHOL DEHYDROGENASE, alcohol
dehydrogenase 1, ARABIDOPSIS
THALIANA ALCOHOL DEHYDROGENASE,
ATADH1		 0.71 0.32 -0.31
11 ATCG00770 ribosomal protein S8 ribosomal protein S8 -0.7 0.32 -0.31
12 AT1G12330 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 12 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G12900.1); Has 249 Blast hits to 249 proteins in
27 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi -
14; Plants - 217; Viruses - 0; Other Eukaryotes - 11
(source: NCBI BLink).		 -0.7 0.3 -0.32
13 AT5G15890 TRICHOME BIREFRINGENCE-LIKE 21 TRICHOME BIREFRINGENCE-LIKE 21 0.7 0.32 -0.32
14 AT3G22760 Tesmin/TSO1-like CXC domain-containing protein SOL1 -0.69 0.31 -0.3
15 AT2G42660 Homeodomain-like superfamily protein 0.69 0.33 -0.31
16 AT5G57620 myb domain protein 36 myb domain protein 36, myb domain
protein 36		 0.69 0.33 -0.33
17 AT1G77400 CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF688 (InterPro:IPR007789); BEST Arabidopsis thaliana
protein match is: hydroxyproline-rich glycoprotein family
protein (TAIR:AT1G21695.1); Has 328 Blast hits to 314
proteins in 61 species: Archae - 0; Bacteria - 12; Metazoa
- 130; Fungi - 28; Plants - 92; Viruses - 10; Other
Eukaryotes - 56 (source: NCBI BLink).		 -0.68 0.31 -0.31
18 AT4G33070 Thiamine pyrophosphate dependent pyruvate decarboxylase
family protein		 0.68 0.3 -0.31
19 AT4G28760 Protein of unknown function (DUF3741) -0.67 0.32 -0.3
20 AT3G07400 lipase class 3 family protein -0.67 0.3 -0.33
21 AT1G23380 KNOTTED1-like homeobox gene 6 KNOTTED1-like homeobox gene 6,
KNAT6L, KNAT6S		 0.67 0.31 -0.31
22 AT2G43610 Chitinase family protein 0.67 0.32 -0.32
23 AT3G23030 indole-3-acetic acid inducible 2 indole-3-acetic acid inducible 2 0.66 0.29 -0.31
24 AT2G19580 tetraspanin2 tetraspanin2 0.66 0.29 -0.32
25 AT1G78010 tRNA modification GTPase, putative -0.66 0.33 -0.33
26 AT2G44900 ARABIDILLO-1 ARABIDILLO-1, F-box Armadillo
protein 1		 -0.65 0.32 -0.32
27 AT1G22990 Heavy metal transport/detoxification superfamily protein heavy metal associated
isoprenylated plant protein 22		 0.65 0.3 -0.31
28 AT1G09550 Pectinacetylesterase family protein -0.65 0.31 -0.33
29 AT5G66700 homeobox 53 ARABIDOPSIS THALIANA HOMEOBOX 53,
HOMEOBOX-8, homeobox 53		 0.65 0.32 -0.32
30 AT3G24480 Leucine-rich repeat (LRR) family protein -0.65 0.32 -0.31
31 AT1G05030 Major facilitator superfamily protein -0.65 0.29 -0.3
32 AT1G14080 fucosyltransferase 6 ATFUT6, fucosyltransferase 6 0.64 0.29 -0.33
33 AT5G14880 Potassium transporter family protein -0.64 0.33 -0.34
34 AT5G45280 Pectinacetylesterase family protein 0.64 0.3 -0.33
35 AT3G16380 poly(A) binding protein 6 poly(A) binding protein 6 -0.64 0.28 -0.31
36 AT4G02170 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G38700.1); Has 53 Blast hits
to 53 proteins in 10 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.64 0.3 -0.34
37 AT4G17350 Plant protein of unknown function (DUF828) with plant
pleckstrin homology-like region		 0.64 0.33 -0.31
38 AT2G30130 Lateral organ boundaries (LOB) domain family protein ASL5, LBD12, PEACOCK 1 0.64 0.31 -0.31
39 AT5G60200 TARGET OF MONOPTEROS 6 TARGET OF MONOPTEROS 6 0.64 0.33 -0.31
40 AT5G65140 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 trehalose-6-phosphate phosphatase
J		 0.64 0.34 -0.29
41 AT3G60260 ELMO/CED-12 family protein 0.64 0.32 -0.3
42 AT2G34020 Calcium-binding EF-hand family protein 0.64 0.32 -0.3
43 AT3G46440 UDP-XYL synthase 5 UDP-XYL synthase 5 0.63 0.32 -0.3
44 AT3G08630 Protein of unknown function (DUF3411) 0.63 0.32 -0.35
45 AT4G31280 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.63 0.32 -0.3
46 AT1G29200 O-fucosyltransferase family protein -0.63 0.3 -0.32
47 AT5G45920 SGNH hydrolase-type esterase superfamily protein 0.63 0.35 -0.32
48 AT5G28640 SSXT family protein ANGUSTIFOLIA 3, ARABIDOPSIS
GRF1-INTERACTING FACTOR 1,
GRF1-INTERACTING FACTOR,
GRF1-INTERACTING FACTOR 1		 0.63 0.33 -0.31
49 AT5G02260 expansin A9 ATEXP9, expansin A9, ATHEXP ALPHA
1.10, EXP9, expansin A9		 0.62 0.32 -0.31
50 AT4G11880 AGAMOUS-like 14 AGAMOUS-like 14 0.62 0.32 -0.32
51 AT4G32890 GATA transcription factor 9 GATA transcription factor 9 0.62 0.32 -0.33
52 AT1G17060 cytochrome p450 72c1 CHIBI 2, cytochrome p450 72c1,
SHRINK 1, SUPPRESSOR OF PHYB-4 7		 0.62 0.33 -0.33
53 AT4G19980 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: root, pedicel; EXPRESSED DURING:
4 anthesis; Has 30201 Blast hits to 17322 proteins in 780
species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.62 0.3 -0.32
54 AT3G05650 receptor like protein 32 receptor like protein 32, receptor
like protein 32		 -0.61 0.31 -0.31
55 AT2G34880 Transcription factor jumonji (jmj) family protein / zinc
finger (C5HC2 type) family protein		 maternal effect embryo arrest 27,
PKDM7C		 -0.61 0.32 -0.32
56 AT3G05020 acyl carrier protein 1 ACYL CARRIER PROTEIN, acyl carrier
protein 1		 0.61 0.3 -0.31
57 AT4G18465 RNA helicase family protein 0.61 0.32 -0.31
58 AT4G38130 histone deacetylase 1 ARABIDOPSIS HISTONE DEACETYLASE 1,
ARABIDOPSIS HISTONE DEACETYLASE
19, histone deacetylase 1, HDA1,
HISTONE DEACETYLASE 19, RPD3A		 0.61 0.31 -0.3
59 AT4G13195 CLAVATA3/ESR-RELATED 44 CLAVATA3/ESR-RELATED 44 0.61 0.33 -0.31
60 AT3G59410 protein kinase family protein ARABIDOPSIS THALIANA GENERAL
CONTROL NON-REPRESSIBLE 2, GENERAL
CONTROL NON-REPRESSIBLE 2		 -0.61 0.32 -0.31
61 AT5G18560 Integrase-type DNA-binding superfamily protein PUCHI 0.61 0.31 -0.31
62 AT4G00800 transducin family protein / WD-40 repeat family protein SETH5 -0.61 0.32 -0.32
63 AT1G15170 MATE efflux family protein 0.61 0.3 -0.32
64 AT3G24450 Heavy metal transport/detoxification superfamily protein 0.6 0.32 -0.3
65 AT1G30160 Protein of unknown function (DUF295) -0.6 0.32 -0.32
66 AT1G03320 unknown protein; Has 1038 Blast hits to 683 proteins in 112
species: Archae - 4; Bacteria - 14; Metazoa - 318; Fungi -
117; Plants - 86; Viruses - 8; Other Eukaryotes - 491
(source: NCBI BLink).		 -0.6 0.33 -0.33
67 AT3G51590 lipid transfer protein 12 lipid transfer protein 12 -0.6 0.31 -0.32
68 AT3G20470 glycine-rich protein 5 ATGRP-5, ATGRP5, GLYCINE-RICH
PROTEIN 5, glycine-rich protein 5		 0.6 0.33 -0.31
69 AT5G27630 acyl-CoA binding protein 5 acyl-CoA binding protein 5 -0.6 0.32 -0.3
70 AT1G05200 glutamate receptor 3.4 glutamate receptor 3.4, glutamate
receptor 3.4, GLUR3		 -0.6 0.31 -0.3
71 AT1G15960 NRAMP metal ion transporter 6 ATNRAMP6, NRAMP metal ion
transporter 6		 -0.6 0.33 -0.32
72 AT3G04800 translocase inner membrane subunit 23-3 translocase inner membrane subunit
23-3, translocase inner membrane
subunit 23-3		 0.6 0.32 -0.34
73 AT1G08080 alpha carbonic anhydrase 7 alpha carbonic anhydrase 7, A.
THALIANA ALPHA CARBONIC ANHYDRASE
7		 -0.6 0.34 -0.32
74 ATCG00750 ribosomal protein S11 ribosomal protein S11 -0.6 0.3 -0.3
75 ATCG00540 photosynthetic electron transfer A photosynthetic electron transfer A -0.6 0.3 -0.3
76 AT4G34970 actin depolymerizing factor 9 actin depolymerizing factor 9 0.6 0.31 -0.33
77 AT5G09410 ethylene induced calmodulin binding protein calmodulin-binding transcription
activator 1, ethylene induced
calmodulin binding protein		 -0.6 0.32 -0.33
78 AT5G56320 expansin A14 ATEXP14, expansin A14, ATHEXP
ALPHA 1.5, EXPANSIN 14, expansin
A14		 0.6 0.3 -0.3
79 AT1G01320 Tetratricopeptide repeat (TPR)-like superfamily protein -0.59 0.32 -0.33
80 AT1G73340 Cytochrome P450 superfamily protein 0.59 0.31 -0.33
81 AT3G10010 demeter-like 2 demeter-like 2 -0.59 0.31 -0.31
82 AT2G04230 FBD, F-box and Leucine Rich Repeat domains containing
protein		 -0.59 0.3 -0.29
83 AT5G25880 NADP-malic enzyme 3 Arabidopsis thaliana NADP-malic
enzyme 3, NADP-malic enzyme 3		 0.59 0.31 -0.34
84 AT2G21060 glycine-rich protein 2B COLD SHOCK DOMAIN PROTEIN 4,
glycine-rich protein 2B,
glycine-rich protein 2B		 0.59 0.31 -0.32
85 AT5G59800 methyl-CPG-binding domain 7 ARABIDOPSIS THALIANA
METHYL-CPG-BINDING DOMAIN 7,
methyl-CPG-binding domain 7		 -0.59 0.33 -0.32
86 AT5G53290 cytokinin response factor 3 cytokinin response factor 3 0.59 0.31 -0.31
87 AT1G01030 AP2/B3-like transcriptional factor family protein NGATHA3 -0.59 0.31 -0.32
88 AT5G20830 sucrose synthase 1 ASUS1, atsus1, sucrose synthase 1 0.59 0.3 -0.31
89 AT1G51190 Integrase-type DNA-binding superfamily protein PLETHORA 2 0.59 0.3 -0.31
90 AT1G40230 transposable element gene -0.59 0.32 -0.29
91 AT5G53660 growth-regulating factor 7 growth-regulating factor 7,
growth-regulating factor 7		 -0.58 0.31 -0.31
92 AT4G20200 Terpenoid cyclases/Protein prenyltransferases superfamily
protein		 -0.58 0.3 -0.32
93 AT1G52180 Aquaporin-like superfamily protein -0.58 0.29 -0.31
94 AT1G78100 F-box family protein auxin up-regulated f-box protein 1 0.58 0.28 -0.3
95 AT4G14560 indole-3-acetic acid inducible AUXIN RESISTANT 5, indole-3-acetic
acid inducible		 0.58 0.33 -0.3
96 AT1G50840 polymerase gamma 2 polymerase gamma 2, polymerase I A -0.58 0.32 -0.3
97 AT1G11400 partner of Y14-MAGO partner of Y14-MAGO 0.58 0.31 -0.33
98 AT2G26290 root-specific kinase 1 root-specific kinase 1 0.58 0.3 -0.3
99 AT1G23420 Plant-specific transcription factor YABBY family protein INNER NO OUTER -0.58 0.33 -0.31
100 AT1G27520 Glycosyl hydrolase family 47 protein -0.58 0.31 -0.32
101 ATCG00630 PSAJ PSAJ -0.57 0.31 -0.32
102 AT5G24270 Calcium-binding EF-hand family protein SALT OVERLY SENSITIVE 3,
CALCINEURIN B-LIKE PROTEIN 4, SALT
OVERLY SENSITIVE 3		 0.57 0.32 -0.32
103 AT1G63200 Cystatin/monellin superfamily protein -0.57 0.32 -0.31
104 AT3G03090 vacuolar glucose transporter 1 vacuolar glucose transporter 1,
vacuolar glucose transporter 1		 -0.57 0.31 -0.28
105 AT1G17260 autoinhibited H(+)-ATPase isoform 10 autoinhibited H(+)-ATPase isoform
10		 -0.57 0.32 -0.3
106 AT5G43690 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.57 0.31 -0.3
107 AT4G11950 Protein of unknown function (DUF1191) -0.57 0.3 -0.32
108 AT5G04200 metacaspase 9 metacaspase 9, metacaspase 2f,
metacaspase 9, metacaspase 2f		 0.57 0.32 -0.34
109 AT4G15750 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 -0.57 0.3 -0.31
110 AT2G17140 Pentatricopeptide repeat (PPR) superfamily protein -0.57 0.32 -0.32
111 AT1G15290 Tetratricopeptide repeat (TPR)-like superfamily protein -0.57 0.34 -0.32
112 AT1G50310 sugar transporter 9 SUGAR TRANSPORTER 9, sugar
transporter 9		 -0.57 0.33 -0.3
113 AT2G43150 Proline-rich extensin-like family protein -0.57 0.33 -0.33
114 AT1G36940 unknown protein; Has 21 Blast hits to 21 proteins in 8
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.56 0.31 -0.33
115 AT1G61620 phosphoinositide binding 0.56 0.32 -0.3
116 AT1G10990 unknown protein; Has 4 Blast hits to 4 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.56 0.31 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
117 C0133 Kaempferol-3,7-O-α-dirhamnopyranoside Kaempferol-3,7-O-α-L-dirhamnopyranoside Kaempferol-3-rhamnoside-7-rhamnoside kaempferol glucoside biosynthesis (Arabidopsis) -0.93 0.48 -0.47 C0133
118 C0072 Cyanidin 3-O-[2''-O-(xylosyl) glucoside] 5-O-glucoside - - - -0.76 0.45 -0.45
119 C0129 Kaempferol-3-(2''-O-α-rhamnosyl)-O-β-glucosyl-7-O-α-rhamnoside Kaempferol-3-(2''-O-α-L-rhamnosyl)-O-β-D-glucosyl-7-O-α-L-rhamnoside - kaempferol glucoside biosynthesis (Arabidopsis) -0.75 0.45 -0.42
120 C0070 Cyanidin 3-O-[2''-O-(2'''-O-(sinapoyl)xylosyl) 6''-O-(p-O-coumaroyl) glucoside] 5-O-[6''''-O-(malonyl) glucoside] - - - -0.72 0.45 -0.44
121 C0103 Glutaric acid - - - 0.7 0.45 -0.43