AT3G23590 : MED33A
Query Information
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AGICode AT3G23590
Description REF4-related 1
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G23590 REF4-related 1 MED33A, REF4-related 1 1 0.3 -0.32
2 AT1G09010 glycoside hydrolase family 2 protein 0.75 0.3 -0.32
3 AT3G43510 transposable element gene -0.71 0.29 -0.31
4 AT4G28020 unknown protein; CONTAINS InterPro DOMAIN/s:
Uncharacterised protein family UPF0066
(InterPro:IPR001378); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 -0.69 0.33 -0.3
5 AT2G40420 Transmembrane amino acid transporter family protein 0.68 0.33 -0.32
6 AT4G37090 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.67 0.31 -0.31
7 AT1G30550 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.66 0.31 -0.31
8 AT1G08580 unknown protein; Has 39 Blast hits to 39 proteins in 15
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 35; Viruses - 0; Other Eukaryotes - 4 (source:
NCBI BLink).		 -0.66 0.32 -0.28
9 AT3G07590 Small nuclear ribonucleoprotein family protein -0.66 0.3 -0.32
10 AT1G75670 DNA-directed RNA polymerases -0.66 0.32 -0.31
11 AT2G30000 PHF5-like protein -0.66 0.32 -0.33
12 AT3G60360 embryo sac development arrest 14 EMBRYO SAC DEVELOPMENT ARREST 14,
U3 SMALL NUCLEOLAR RNA-ASSOCIATED
PROTEIN 11		 -0.66 0.32 -0.34
13 AT3G55620 Translation initiation factor IF6 eukaryotic initiation facor 6A,
embryo defective 1624		 -0.65 0.32 -0.32
14 AT5G53400 HSP20-like chaperones superfamily protein BOBBER1 -0.65 0.33 -0.29
15 AT5G63990 Inositol monophosphatase family protein -0.65 0.31 -0.32
16 AT3G55120 Chalcone-flavanone isomerase family protein A11, CHALCONE FLAVANONE ISOMERASE,
TRANSPARENT TESTA 5		 -0.64 0.33 -0.3
17 AT4G13850 glycine-rich RNA-binding protein 2 GLYCINE-RICH RNA-BINDING PROTEIN
2, glycine-rich RNA-binding
protein 2, glycine rich protein 2		 -0.64 0.34 -0.32
18 AT5G24840 tRNA (guanine-N-7) methyltransferase -0.63 0.31 -0.33
19 AT3G52040 unknown protein; Has 37 Blast hits to 37 proteins in 15
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.63 0.31 -0.3
20 AT2G44820 unknown protein; Has 70 Blast hits to 70 proteins in 25
species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 4;
Plants - 47; Viruses - 0; Other Eukaryotes - 10 (source:
NCBI BLink).		 -0.63 0.31 -0.31
21 AT4G18465 RNA helicase family protein -0.63 0.29 -0.33
22 AT1G52930 Ribosomal RNA processing Brix domain protein -0.63 0.3 -0.3
23 AT3G53880 NAD(P)-linked oxidoreductase superfamily protein Aldo-keto reductase family 4
member C11		 -0.63 0.33 -0.31
24 AT5G12410 THUMP domain-containing protein -0.63 0.32 -0.3
25 AT3G47000 Glycosyl hydrolase family protein 0.63 0.31 -0.32
26 AT5G27950 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.62 0.31 -0.33
27 AT1G19835 Plant protein of unknown function (DUF869) 0.62 0.3 -0.34
28 AT5G55610 unknown protein; LOCATED IN: mitochondrion, chloroplast,
plastid, membrane; EXPRESSED IN: 25 plant structures;
EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to
1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 -0.62 0.29 -0.33
29 AT1G55350 calpain-type cysteine protease family ATDEK1, DEFECTIVE KERNEL 1, embryo
defective 1275, EMBRYO DEFECTIVE
80		 0.62 0.33 -0.32
30 AT1G30070 SGS domain-containing protein -0.62 0.3 -0.31
31 AT5G61030 glycine-rich RNA-binding protein 3 glycine-rich RNA-binding protein 3 -0.62 0.31 -0.33
32 AT3G14290 20S proteasome alpha subunit E2 20S proteasome alpha subunit E2 -0.62 0.32 -0.33
33 AT2G44510 CDK inhibitor P21 binding protein -0.62 0.31 -0.3
34 AT2G39250 Integrase-type DNA-binding superfamily protein SCHNARCHZAPFEN 0.62 0.29 -0.3
35 AT3G12130 KH domain-containing protein / zinc finger (CCCH type)
family protein		 -0.62 0.33 -0.32
36 AT1G18800 NAP1-related protein 2 NAP1-related protein 2 -0.62 0.33 -0.31
37 AT2G45520 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; EXPRESSED IN: 23
plant structures; EXPRESSED DURING: 13 growth stages; Has
260 Blast hits to 238 proteins in 75 species: Archae - 0;
Bacteria - 6; Metazoa - 94; Fungi - 40; Plants - 38;
Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).		 -0.61 0.33 -0.31
38 AT5G22330 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 ATTIP49A, RESISTANCE TO
PSEUDOMONAS SYRINGAE PV MACULICOLA
INTERACTOR 1		 -0.61 0.32 -0.31
39 AT3G07090 PPPDE putative thiol peptidase family protein -0.61 0.31 -0.31
40 AT3G19440 Pseudouridine synthase family protein -0.61 0.32 -0.33
41 AT1G31010 organellar single-stranded DNA binding protein 4 organellar single-stranded DNA
binding protein 4		 -0.61 0.31 -0.31
42 AT5G66110 Heavy metal transport/detoxification superfamily protein heavy metal associated
isoprenylated plant protein 27		 0.61 0.32 -0.33
43 AT2G18260 syntaxin of plants 112 ATSYP112, syntaxin of plants 112 0.61 0.32 -0.33
44 AT2G46690 SAUR-like auxin-responsive protein family 0.61 0.33 -0.29
45 AT1G26470 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
regulation of transcription; LOCATED IN: nucleus, H4/H2A
histone acetyltransferase complex; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 15 growth stages; CONTAINS
InterPro DOMAIN/s: CT20 (InterPro:IPR012423); Has 60 Blast
hits to 60 proteins in 27 species: Archae - 0; Bacteria -
0; Metazoa - 26; Fungi - 2; Plants - 30; Viruses - 0; Other
Eukaryotes - 2 (source: NCBI BLink).		 -0.61 0.34 -0.31
46 AT1G15420 CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp12
(InterPro:IPR007148); Has 764 Blast hits to 656 proteins in
193 species: Archae - 0; Bacteria - 42; Metazoa - 237;
Fungi - 154; Plants - 85; Viruses - 23; Other Eukaryotes -
223 (source: NCBI BLink).		 -0.61 0.29 -0.31
47 AT2G41630 transcription factor IIB transcription factor IIB -0.61 0.33 -0.3
48 AT4G30930 Ribosomal protein L21 NUCLEAR FUSION DEFECTIVE 1 -0.61 0.32 -0.33
49 AT2G02780 Leucine-rich repeat protein kinase family protein 0.6 0.31 -0.33
50 AT2G31360 16:0delta9 desaturase 2 16:0delta9 desaturase 2,
16:0delta9 desaturase 2		 -0.6 0.33 -0.32
51 AT3G02500 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G16030.1); Has 49 Blast hits
to 49 proteins in 10 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.6 0.3 -0.31
52 AT4G32400 Mitochondrial substrate carrier family protein ARABIDOPSIS THALIANA BRITTLE 1,
EMBRYO DEFECTIVE 104, EMBRYO
DEFECTIVE 42, SODIUM
HYPERSENSITIVE 1		 -0.6 0.31 -0.32
53 AT5G16150 plastidic GLC translocator GLUCOSE TRANSPORTER 1, plastidic
GLC translocator		 0.6 0.31 -0.3
54 AT5G38890 Nucleic acid-binding, OB-fold-like protein -0.6 0.33 -0.33
55 AT3G09600 Homeodomain-like superfamily protein LHY-CCA1-LIKE5, REVEILLE 8 0.6 0.31 -0.31
56 AT1G26840 origin recognition complex protein 6 ARABIDOPSIS THALIANA ORIGIN
RECOGNITION COMPLEX PROTEIN 6,
origin recognition complex protein
6		 -0.6 0.31 -0.3
57 AT4G35050 Transducin family protein / WD-40 repeat family protein MULTICOPY SUPPRESSOR OF IRA1 3,
NUCLEOSOME/CHROMATIN ASSEMBLY
FACTOR GROUP C 3		 -0.59 0.33 -0.33
58 AT4G23040 Ubiquitin-like superfamily protein -0.59 0.31 -0.32
59 AT5G51410 LUC7 N_terminus domain-containing protein -0.59 0.3 -0.32
60 AT4G01790 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein -0.59 0.33 -0.33
61 AT1G43650 nodulin MtN21 /EamA-like transporter family protein 0.59 0.32 -0.33
62 ATCG00550 photosystem II reaction center protein J photosystem II reaction center
protein J		 0.59 0.33 -0.31
63 AT1G27410 DNA repair metallo-beta-lactamase family protein 0.59 0.31 -0.33
64 AT3G26980 membrane-anchored ubiquitin-fold protein 4 precursor membrane-anchored ubiquitin-fold
protein 4 precursor		 -0.59 0.31 -0.32
65 AT1G03905 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 ATP-binding cassette I19 -0.58 0.32 -0.3
66 AT1G02020 nitroreductase family protein 0.57 0.32 -0.31
67 AT4G10020 hydroxysteroid dehydrogenase 5 hydroxysteroid dehydrogenase 5,
hydroxysteroid dehydrogenase 5		 0.57 0.32 -0.33
68 AT5G27360 Major facilitator superfamily protein SFP2 0.57 0.3 -0.31
69 AT2G44990 carotenoid cleavage dioxygenase 7 ATCCD7, carotenoid cleavage
dioxygenase 7, MAX3		 0.57 0.33 -0.32
70 AT5G53770 Nucleotidyltransferase family protein -0.57 0.33 -0.32
71 AT1G02090 Proteasome component (PCI) domain protein ARABIDOPSIS THALIANA COP9
SIGNALOSOME SUBUNIT 7,
CONSTITUTIVE PHOTOMORPHOGENIC 15,
COP9 SIGNALOSOME SUBUNIT 7, FUSCA
5		 -0.57 0.31 -0.33
72 AT5G04380 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.57 0.32 -0.31
73 AT5G49400 zinc knuckle (CCHC-type) family protein -0.57 0.29 -0.31
74 AT1G19240 unknown protein; Has 24 Blast hits to 24 proteins in 11
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.57 0.3 -0.32
75 AT2G23300 Leucine-rich repeat protein kinase family protein -0.57 0.31 -0.3
76 AT1G70510 KNOTTED-like from Arabidopsis thaliana 2 ARABIDOPSIS THALIANA KN 1,
KNOTTED-like from Arabidopsis
thaliana 2		 0.57 0.32 -0.3
77 AT3G52480 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 10 plant structures;
EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis,
petal differentiation and expansion stage; Has 28 Blast
hits to 28 proteins in 7 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.56 0.31 -0.3
78 AT1G75510 Transcription initiation factor IIF, beta subunit -0.56 0.29 -0.33
79 AT4G29540 bacterial transferase hexapeptide repeat-containing protein AtLpxA, LpxA -0.56 0.31 -0.31
80 AT5G64570 beta-D-xylosidase 4 ARABIDOPSIS THALIANA
BETA-D-XYLOSIDASE 4,
beta-D-xylosidase 4		 0.55 0.33 -0.33
81 AT5G57670 Protein kinase superfamily protein 0.55 0.33 -0.33
82 AT2G14080 Disease resistance protein (TIR-NBS-LRR class) family 0.55 0.3 -0.32
83 AT5G55360 MBOAT (membrane bound O-acyl transferase) family protein 0.55 0.31 -0.31
84 AT2G45550 cytochrome P450, family 76, subfamily C, polypeptide 4 cytochrome P450, family 76,
subfamily C, polypeptide 4		 0.54 0.31 -0.32