AT3G13920 : eukaryotic translation initiation factor 4A1
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AGICode AT3G13920
Description eukaryotic translation initiation factor 4A1
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G13920 eukaryotic translation initiation factor 4A1 eukaryotic translation initiation
factor 4A1, RH4, TIF4A1
1 0.3 -0.31
2 AT5G56670 Ribosomal protein S30 family protein 0.91 0.31 -0.31
3 AT5G44340 tubulin beta chain 4 tubulin beta chain 4 0.91 0.33 -0.32
4 AT4G00100 ribosomal protein S13A ribosomal protein S13A, POINTED
FIRST LEAF 2, RPS13, ribosomal
protein S13A
0.91 0.32 -0.31
5 AT2G34480 Ribosomal protein L18ae/LX family protein 0.9 0.34 -0.31
6 AT3G04840 Ribosomal protein S3Ae 0.89 0.32 -0.32
7 AT3G25520 ribosomal protein L5 ribosomal protein L5, OLIGOCELLULA
5, PIGGYBACK3, RIBOSOMAL PROTEIN
L5 A
0.89 0.32 -0.3
8 AT3G56150 eukaryotic translation initiation factor 3C ATEIF3C-1, ATTIF3C1, eukaryotic
translation initiation factor 3C,
EIF3C-1, TIF3C1
0.89 0.32 -0.31
9 AT5G57020 myristoyl-CoA:protein N-myristoyltransferase ARABIDOPSIS THALIANA
MYRISTOYL-COA:PROTEIN
N-MYRISTOYLTRANSFERASE,
myristoyl-CoA:protein
N-myristoyltransferase
0.88 0.31 -0.32
10 AT3G05560 Ribosomal L22e protein family 0.88 0.32 -0.3
11 AT4G31700 ribosomal protein S6 ribosomal protein S6, RPS6A 0.88 0.32 -0.32
12 AT2G21580 Ribosomal protein S25 family protein 0.88 0.29 -0.31
13 AT4G15000 Ribosomal L27e protein family 0.88 0.32 -0.3
14 AT1G18540 Ribosomal protein L6 family protein 0.88 0.3 -0.32
15 AT5G61020 evolutionarily conserved C-terminal region 3 evolutionarily conserved
C-terminal region 3
0.88 0.33 -0.31
16 AT5G27850 Ribosomal protein L18e/L15 superfamily protein 0.87 0.31 -0.3
17 AT3G49010 breast basic conserved 1 breast basic conserved 1, breast
basic conserved 1, 40S RIBOSOMAL
PROTEIN
0.87 0.32 -0.33
18 AT3G57290 eukaryotic translation initiation factor 3E ATEIF3E-1, ATINT6, eukaryotic
translation initiation factor 3E,
INT-6, INT6, TIF3E1
0.87 0.31 -0.32
19 AT3G47370 Ribosomal protein S10p/S20e family protein 0.87 0.28 -0.33
20 AT1G18080 Transducin/WD40 repeat-like superfamily protein ATARCA, RACK1A, RECEPTOR FOR
ACTIVATED C KINASE 1 A
0.87 0.27 -0.31
21 AT2G27530 Ribosomal protein L1p/L10e family PIGGYBACK1 0.87 0.31 -0.28
22 AT5G47210 Hyaluronan / mRNA binding family 0.87 0.3 -0.32
23 AT5G64140 ribosomal protein S28 ribosomal protein S28 0.87 0.32 -0.31
24 AT3G58700 Ribosomal L5P family protein 0.87 0.31 -0.33
25 AT1G14320 Ribosomal protein L16p/L10e family protein ribosomal protein L10, ribosomal
protein L10 A, SUPPRESSOR OF
ACAULIS 52
0.86 0.31 -0.3
26 AT1G17880 basic transcription factor 3 ATBTF3, basic transcription factor
3
0.86 0.31 -0.32
27 AT2G25210 Ribosomal protein L39 family protein 0.86 0.32 -0.34
28 AT3G61110 ribosomal protein S27 ribosomal protein S27, ribosomal
protein S27
0.86 0.32 -0.32
29 AT3G20050 T-complex protein 1 alpha subunit T-complex protein 1 alpha subunit,
T-complex protein 1 alpha subunit
0.86 0.31 -0.31
30 AT3G49080 Ribosomal protein S5 domain 2-like superfamily protein 0.86 0.31 -0.31
31 AT5G09510 Ribosomal protein S19 family protein 0.86 0.33 -0.32
32 AT1G49760 poly(A) binding protein 8 poly(A) binding protein 8, POLY(A)
BINDING PROTEIN 8
0.86 0.31 -0.34
33 AT4G38710 glycine-rich protein 0.86 0.33 -0.32
34 AT3G62870 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.86 0.32 -0.3
35 AT5G03850 Nucleic acid-binding, OB-fold-like protein 0.86 0.32 -0.3
36 AT5G19510 Translation elongation factor EF1B/ribosomal protein S6
family protein
0.86 0.28 -0.32
37 AT5G07090 Ribosomal protein S4 (RPS4A) family protein 0.86 0.31 -0.31
38 AT1G04170 eukaryotic translation initiation factor 2 gamma subunit eukaryotic translation initiation
factor 2 gamma subunit
0.86 0.33 -0.3
39 AT4G01560 Ribosomal RNA processing Brix domain protein maternal effect embryo arrest 49 0.85 0.31 -0.32
40 AT1G67430 Ribosomal protein L22p/L17e family protein 0.85 0.32 -0.33
41 AT2G01250 Ribosomal protein L30/L7 family protein 0.85 0.32 -0.29
42 AT5G27770 Ribosomal L22e protein family 0.85 0.31 -0.33
43 AT3G60770 Ribosomal protein S13/S15 0.85 0.33 -0.28
44 AT5G61770 PETER PAN-like protein PETER PAN-like protein 0.85 0.3 -0.35
45 AT4G10480 Nascent polypeptide-associated complex (NAC), alpha subunit
family protein
0.85 0.3 -0.29
46 AT3G09500 Ribosomal L29 family protein 0.85 0.33 -0.31
47 AT5G26710 Glutamyl/glutaminyl-tRNA synthetase, class Ic 0.85 0.31 -0.31
48 AT1G64370 unknown protein; Has 773 Blast hits to 375 proteins in 118
species: Archae - 0; Bacteria - 97; Metazoa - 421; Fungi -
108; Plants - 31; Viruses - 0; Other Eukaryotes - 116
(source: NCBI BLink).
-0.85 0.32 -0.32
49 AT3G12390 Nascent polypeptide-associated complex (NAC), alpha subunit
family protein
0.85 0.29 -0.31
50 AT3G09630 Ribosomal protein L4/L1 family 0.85 0.34 -0.31
51 AT4G12600 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.85 0.31 -0.31
52 AT3G11710 lysyl-tRNA synthetase 1 lysyl-tRNA synthetase 1 0.84 0.32 -0.31
53 AT5G58420 Ribosomal protein S4 (RPS4A) family protein 0.84 0.32 -0.33
54 AT4G17520 Hyaluronan / mRNA binding family 0.84 0.34 -0.29
55 AT1G73230 Nascent polypeptide-associated complex NAC 0.84 0.31 -0.34
56 AT2G41840 Ribosomal protein S5 family protein 0.84 0.33 -0.32
57 AT5G41520 RNA binding Plectin/S10 domain-containing protein 0.84 0.3 -0.35
58 AT1G72370 40s ribosomal protein SA AP40, 40s ribosomal protein SA,
RP40, RPSAA
0.84 0.3 -0.34
59 AT4G33250 eukaryotic translation initiation factor 3K ATTIF3K1, eukaryotic translation
initiation factor 3K, TIF3K1
0.84 0.31 -0.31
60 AT5G35530 Ribosomal protein S3 family protein 0.83 0.31 -0.3
61 AT1G23290 Ribosomal protein L18e/L15 superfamily protein RIBOSOMAL PROTEIN L27A, RPL27AB 0.83 0.31 -0.31
62 AT2G25670 BEST Arabidopsis thaliana protein match is: copper ion
binding (TAIR:AT4G32610.1); Has 43784 Blast hits to 26928
proteins in 1799 species: Archae - 86; Bacteria - 6347;
Metazoa - 15971; Fungi - 5398; Plants - 1931; Viruses -
259; Other Eukaryotes - 13792 (source: NCBI BLink).
0.83 0.32 -0.32
63 AT1G24510 TCP-1/cpn60 chaperonin family protein 0.83 0.34 -0.32
64 AT5G44320 Eukaryotic translation initiation factor 3 subunit 7
(eIF-3)
0.83 0.3 -0.3
65 AT2G45180 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein
0.83 0.32 -0.32
66 AT4G20440 small nuclear ribonucleoprotein associated protein B small nuclear ribonucleoprotein
associated protein B
0.83 0.31 -0.34
67 AT3G60245 Zinc-binding ribosomal protein family protein 0.83 0.3 -0.32
68 AT1G12270 stress-inducible protein, putative Hop1 0.83 0.34 -0.31
69 AT2G40290 Eukaryotic translation initiation factor 2 subunit 1 0.83 0.31 -0.32
70 AT5G41970 Metal-dependent protein hydrolase 0.82 0.33 -0.32
71 AT2G27710 60S acidic ribosomal protein family 0.82 0.31 -0.31
72 AT2G34570 PIN domain-like family protein maternal effect embryo arrest 21 0.82 0.3 -0.3
73 AT4G34740 GLN phosphoribosyl pyrophosphate amidotransferase 2 GLN phosphoribosyl pyrophosphate
amidotransferase 2, GLN
phosphoribosyl pyrophosphate
amidotransferase 2, ATPURF2,
CHLOROPLAST IMPORT APPARATUS 1
0.82 0.32 -0.31
74 AT3G48930 Nucleic acid-binding, OB-fold-like protein embryo defective 1080 0.82 0.31 -0.31
75 AT5G66410 phosducin-like protein 3 homolog phosducin-like protein 3 homolog 0.82 0.32 -0.3
76 AT5G46290 3-ketoacyl-acyl carrier protein synthase I KETOACYL-ACP SYNTHASE 1,
3-ketoacyl-acyl carrier protein
synthase I
0.82 0.3 -0.32
77 AT1G08360 Ribosomal protein L1p/L10e family 0.82 0.31 -0.34
78 AT4G33865 Ribosomal protein S14p/S29e family protein 0.82 0.3 -0.29
79 AT1G34130 staurosporin and temperature sensitive 3-like b staurosporin and temperature
sensitive 3-like b
0.82 0.32 -0.31
80 AT2G23350 poly(A) binding protein 4 poly(A) binding protein 4, POLY(A)
BINDING PROTEIN 4
0.82 0.3 -0.33
81 AT1G50920 Nucleolar GTP-binding protein 0.82 0.31 -0.32
82 AT1G11320 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, plastid; EXPRESSED IN: 7 plant structures;
EXPRESSED DURING: C globular stage, F mature embryo stage,
petal differentiation and expansion stage, E expanded
cotyledon stage, D bilateral stage; Has 46 Blast hits to 46
proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa -
0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).
0.82 0.29 -0.32
83 AT4G17840 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast,
membrane; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Abortive infection protein (InterPro:IPR003675); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT2G35260.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).
-0.81 0.32 -0.31
84 AT1G66070 Translation initiation factor eIF3 subunit 0.81 0.32 -0.3
85 AT4G11420 eukaryotic translation initiation factor 3A ATEIF3A-1, ATTIF3A1, eukaryotic
translation initiation factor 3A,
EIF3A-1, TIF3A1
0.81 0.34 -0.34
86 AT1G76160 SKU5 similar 5 SKU5 similar 5 0.81 0.31 -0.31
87 AT5G52650 RNA binding Plectin/S10 domain-containing protein 0.81 0.29 -0.32
88 AT1G44835 YbaK/aminoacyl-tRNA synthetase-associated domain 0.81 0.31 -0.3
89 AT3G16180 Major facilitator superfamily protein 0.81 0.34 -0.33
90 AT3G18740 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein receptor-like kinase 902 0.81 0.28 -0.3
91 AT2G44860 Ribosomal protein L24e family protein 0.81 0.32 -0.33
92 AT4G00740 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein
QUASIMODO 3 0.81 0.29 -0.31
93 AT1G49600 RNA-binding protein 47A RNA-binding protein 47A,
RNA-binding protein 47A
0.81 0.31 -0.3
94 AT3G46830 RAB GTPase homolog A2C ARABIDOPSIS RAB GTPASE HOMOLOG
A2C, ATRAB11A, RAB GTPase homolog
A2C, RAB GTPASE HOMOLOG A2C, RAB
GTPase homolog A2C
0.81 0.32 -0.31
95 AT1G31660 CONTAINS InterPro DOMAIN/s: Bystin (InterPro:IPR007955);
Has 475 Blast hits to 467 proteins in 210 species: Archae -
0; Bacteria - 9; Metazoa - 155; Fungi - 139; Plants - 55;
Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).
0.81 0.33 -0.31
96 AT1G78130 Major facilitator superfamily protein unfertilized embryo sac 2 -0.81 0.32 -0.31
97 AT1G43710 Pyridoxal phosphate (PLP)-dependent transferases
superfamily protein
embryo defective 1075 0.81 0.3 -0.31
98 AT3G02560 Ribosomal protein S7e family protein 0.81 0.3 -0.31
99 AT1G13090 cytochrome P450, family 71, subfamily B, polypeptide 28 cytochrome P450, family 71,
subfamily B, polypeptide 28
-0.79 0.3 -0.31
100 AT4G26270 phosphofructokinase 3 phosphofructokinase 3 -0.79 0.3 -0.31
101 AT5G23050 acyl-activating enzyme 17 acyl-activating enzyme 17 -0.78 0.3 -0.33
102 AT5G18640 alpha/beta-Hydrolases superfamily protein -0.78 0.3 -0.32
103 AT4G36210 Protein of unknown function (DUF726) -0.78 0.32 -0.3
104 AT1G21410 F-box/RNI-like superfamily protein SKP2A -0.78 0.33 -0.32
105 AT1G77450 NAC domain containing protein 32 NAC domain containing protein 32,
NAC domain containing protein 32
-0.77 0.31 -0.32
106 AT1G74410 RING/U-box superfamily protein -0.77 0.3 -0.32
107 AT3G12520 sulfate transporter 4;2 sulfate transporter 4;2 -0.77 0.32 -0.32
108 AT3G23610 dual specificity protein phosphatase 1 dual specificity protein
phosphatase 1
-0.77 0.34 -0.32
109 AT3G08860 PYRIMIDINE 4 PYRIMIDINE 4 -0.76 0.3 -0.3
110 AT1G03290 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G02880.2); Has 13587 Blast
hits to 10183 proteins in 1114 species: Archae - 257;
Bacteria - 2402; Metazoa - 5637; Fungi - 960; Plants - 675;
Viruses - 54; Other Eukaryotes - 3602 (source: NCBI BLink).
-0.76 0.36 -0.33
111 AT1G22370 UDP-glucosyl transferase 85A5 UDP-glucosyl transferase 85A5,
UDP-glucosyl transferase 85A5
-0.76 0.32 -0.32
112 AT5G47070 Protein kinase superfamily protein -0.76 0.32 -0.32
113 AT4G24450 phosphoglucan, water dikinase ATGWD2, GWD3, phosphoglucan, water
dikinase
-0.75 0.31 -0.3
114 AT3G15790 methyl-CPG-binding domain 11 ATMBD11, methyl-CPG-binding domain
11
-0.75 0.31 -0.31
115 AT2G46680 homeobox 7 homeobox 7, ARABIDOPSIS THALIANA
HOMEOBOX 7, homeobox 7
-0.75 0.31 -0.32
116 AT5G12200 pyrimidine 2 pyrimidine 2 -0.74 0.34 -0.3
117 AT5G24380 YELLOW STRIPE like 2 YELLOW STRIPE LIKE 2, YELLOW
STRIPE like 2
-0.74 0.3 -0.3
118 AT2G25950 Protein of unknown function (DUF1000) -0.74 0.33 -0.32
119 AT1G62540 flavin-monooxygenase glucosinolate S-oxygenase 2 flavin-monooxygenase glucosinolate
S-oxygenase 2
-0.74 0.31 -0.32
120 AT5G03490 UDP-Glycosyltransferase superfamily protein -0.74 0.32 -0.3
121 AT1G79380 Ca(2)-dependent phospholipid-binding protein (Copine)
family
-0.73 0.33 -0.3
122 AT4G12580 unknown protein; Has 24 Blast hits to 18 proteins in 5
species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0;
Plants - 7; Viruses - 0; Other Eukaryotes - 15 (source:
NCBI BLink).
-0.73 0.29 -0.31
123 AT5G38895 RING/U-box superfamily protein -0.73 0.3 -0.32
124 AT3G27110 Peptidase family M48 family protein -0.73 0.31 -0.34
125 AT3G19990 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN:
23 plant structures; EXPRESSED DURING: 13 growth stages;
Has 118 Blast hits to 118 proteins in 41 species: Archae -
0; Bacteria - 42; Metazoa - 0; Fungi - 0; Plants - 56;
Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).
-0.73 0.3 -0.31
126 AT1G30500 nuclear factor Y, subunit A7 nuclear factor Y, subunit A7 -0.73 0.3 -0.31
127 AT1G53280 Class I glutamine amidotransferase-like superfamily protein DJ-1 homolog B, DJ-1 homolog B -0.73 0.34 -0.32
128 AT3G11410 protein phosphatase 2CA AHG3, ARABIDOPSIS THALIANA PROTEIN
PHOSPHATASE 2CA, protein
phosphatase 2CA
-0.73 0.32 -0.33
129 AT1G19650 Sec14p-like phosphatidylinositol transfer family protein -0.72 0.31 -0.33
130 AT1G26440 ureide permease 5 ureide permease 5, UPS5, ureide
permease 5
-0.72 0.32 -0.28
131 AT3G17700 cyclic nucleotide-binding transporter 1 CYCLIC NUCLEOTIDE-GATED CHANNEL
20, cyclic nucleotide-binding
transporter 1, CNGC20
-0.71 0.33 -0.31
132 AT3G60140 Glycosyl hydrolase superfamily protein BETA GLUCOSIDASE 30, DARK
INDUCIBLE 2, SENESCENCE-RELATED
GENE 2
-0.71 0.3 -0.31
133 AT3G16230 Predicted eukaryotic LigT -0.71 0.31 -0.34
134 AT3G24760 Galactose oxidase/kelch repeat superfamily protein -0.71 0.3 -0.32
135 AT2G42950 Magnesium transporter CorA-like family protein -0.71 0.3 -0.32
136 AT3G52070 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 23 Blast hits to 23 proteins
in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).
-0.71 0.29 -0.3
137 AT3G26460 Polyketide cyclase/dehydrase and lipid transport
superfamily protein
-0.71 0.32 -0.31
138 AT4G19840 phloem protein 2-A1 phloem protein 2-A1, phloem
protein 2-A1, phloem protein 2-A1
-0.71 0.33 -0.31
139 AT5G63200 tetratricopeptide repeat (TPR)-containing protein -0.7 0.34 -0.3
140 AT2G32800 protein kinase family protein AP4.3A -0.7 0.32 -0.32
141 AT1G70590 F-box family protein -0.7 0.33 -0.31
142 AT5G63080 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein
-0.7 0.34 -0.33
143 AT1G30220 inositol transporter 2 ARABIDOPSIS THALIANA INOSITOL
TRANSPORTER 2, inositol
transporter 2
-0.7 0.32 -0.3
144 AT4G02120 CTP synthase family protein -0.69 0.32 -0.33
145 AT1G70790 Calcium-dependent lipid-binding (CaLB domain) family
protein
-0.69 0.32 -0.32
146 AT2G33580 Protein kinase superfamily protein -0.69 0.31 -0.3
147 AT2G39450 Cation efflux family protein ATMTP11, MTP11 -0.69 0.34 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
148 C0107 Glycine - Glycine 5-aminoimidazole ribonucleotide biosynthesis I,
gamma-glutamyl cycle,
folate polyglutamylation,
gamma-glutamyl cycle (plant pathway),
glutathione biosynthesis,
glutathione-mediated detoxification II,
folate transformations II,
indole glucosinolate breakdown (active in intact plant cell),
glycine cleavage complex,
camalexin biosynthesis,
thiamine biosynthesis II,
tRNA charging,
glycine biosynthesis,
glutathione degradation,
photorespiration
-0.72 0.45 -0.43 C0107
149 C0054 Agmatine - Agmatine putrescine biosynthesis I,
putrescine biosynthesis II,
superpathway of polyamine biosynthesis
-0.69 0.3 -0.34 C0054