AT3G22670 : -
Query Information
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AGICode AT3G22670
Description Pentatricopeptide repeat (PPR) superfamily protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G22670 Pentatricopeptide repeat (PPR) superfamily protein 1 0.28 -0.3
2 AT1G28060 Pre-mRNA-splicing factor 3 0.8 0.32 -0.3
3 AT5G05210 Surfeit locus protein 6 0.78 0.34 -0.31
4 AT5G64420 DNA polymerase V family 0.78 0.33 -0.33
5 AT3G15760 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 10 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G52565.1); Has 42 Blast hits to 42 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.76 0.31 -0.31
6 AT5G46920 Intron maturase, type II family protein 0.76 0.3 -0.3
7 AT5G02820 Spo11/DNA topoisomerase VI, subunit A protein BRASSINOSTEROID INSENSITIVE 5,
ROOT HAIRLESS 2		 0.75 0.33 -0.31
8 AT4G34910 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.74 0.29 -0.31
9 AT1G22730 MA3 domain-containing protein 0.74 0.33 -0.32
10 AT1G04350 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.72 0.31 -0.31
11 AT5G25800 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 0.72 0.33 -0.34
12 AT5G13270 Pentatricopeptide repeat (PPR) superfamily protein REQUIRED FOR ACCD RNA EDITING 1 0.72 0.32 -0.31
13 AT1G11390 Protein kinase superfamily protein 0.72 0.33 -0.33
14 AT1G25375 Metallo-hydrolase/oxidoreductase superfamily protein -0.72 0.29 -0.33
15 AT2G17510 ribonuclease II family protein EMBRYO DEFECTIVE 2763 0.71 0.31 -0.33
16 AT1G20300 Pentatricopeptide repeat (PPR) superfamily protein 0.71 0.34 -0.31
17 AT5G37930 Protein with RING/U-box and TRAF-like domains -0.71 0.33 -0.33
18 AT3G16230 Predicted eukaryotic LigT -0.7 0.3 -0.34
19 AT1G53035 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT3G15358.1); Has 49 Blast hits to 49 proteins in 9
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.69 0.32 -0.33
20 AT3G11620 alpha/beta-Hydrolases superfamily protein -0.69 0.32 -0.3
21 AT3G58050 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G41960.1); Has 13384 Blast
hits to 8116 proteins in 546 species: Archae - 41; Bacteria
- 766; Metazoa - 5596; Fungi - 1431; Plants - 589; Viruses
- 46; Other Eukaryotes - 4915 (source: NCBI BLink).		 0.69 0.32 -0.32
22 AT5G39900 Small GTP-binding protein 0.69 0.33 -0.31
23 AT3G30843 transposable element gene 0.69 0.3 -0.32
24 AT1G73400 Pentatricopeptide repeat (PPR) superfamily protein 0.69 0.32 -0.31
25 AT3G57890 Tubulin binding cofactor C domain-containing protein 0.69 0.33 -0.31
26 AT1G30290 Tetratricopeptide repeat (TPR)-like superfamily protein 0.68 0.3 -0.3
27 AT5G49500 Signal recognition particle, SRP54 subunit protein -0.68 0.3 -0.29
28 AT4G33960 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 20 plant structures;
EXPRESSED DURING: 10 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G15830.1); Has 32 Blast hits to 32 proteins in 4
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.68 0.29 -0.3
29 AT3G26370 O-fucosyltransferase family protein 0.68 0.32 -0.3
30 AT5G47420 Tryptophan RNA-binding attenuator protein-like -0.68 0.3 -0.31
31 AT1G48430 Dihydroxyacetone kinase -0.68 0.33 -0.33
32 AT1G77930 Chaperone DnaJ-domain superfamily protein -0.68 0.3 -0.32
33 AT3G54980 Pentatricopeptide repeat (PPR) superfamily protein 0.68 0.31 -0.31
34 AT3G17830 Molecular chaperone Hsp40/DnaJ family protein 0.68 0.34 -0.3
35 AT1G23130 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 -0.68 0.3 -0.33
36 AT2G28360 SIT4 phosphatase-associated family protein 0.68 0.29 -0.33
37 AT2G12550 ubiquitin-associated (UBA)/TS-N domain-containing protein homolog of human NUB1 0.67 0.32 -0.33
38 AT2G21390 Coatomer, alpha subunit 0.67 0.33 -0.33
39 AT3G50670 U1 small nuclear ribonucleoprotein-70K U1 small nuclear
ribonucleoprotein-70K, U1SNRNP		 0.67 0.31 -0.32
40 AT1G02960 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G02965.1); Has 83 Blast hits
to 82 proteins in 37 species: Archae - 0; Bacteria - 2;
Metazoa - 20; Fungi - 7; Plants - 29; Viruses - 0; Other
Eukaryotes - 25 (source: NCBI BLink).		 -0.67 0.31 -0.33
41 AT4G37130 hydroxyproline-rich glycoprotein family protein 0.67 0.33 -0.33
42 AT3G04820 Pseudouridine synthase family protein 0.67 0.29 -0.31
43 AT3G02400 SMAD/FHA domain-containing protein 0.67 0.31 -0.29
44 AT5G47430 DWNN domain, a CCHC-type zinc finger 0.67 0.31 -0.33
45 AT3G09600 Homeodomain-like superfamily protein LHY-CCA1-LIKE5, REVEILLE 8 -0.67 0.3 -0.33
46 AT5G10790 ubiquitin-specific protease 22 ubiquitin-specific protease 22 0.67 0.32 -0.29
47 AT2G33730 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.66 0.32 -0.34
48 AT2G25350 Phox (PX) domain-containing protein -0.66 0.31 -0.31
49 AT1G48120 hydrolases;protein serine/threonine phosphatases 0.66 0.33 -0.3
50 AT1G04860 ubiquitin-specific protease 2 ATUBP2, ubiquitin-specific
protease 2		 0.66 0.31 -0.31
51 AT4G20400 JUMONJI 14 JUMONJI 14, PKDM7B 0.66 0.32 -0.32
52 AT2G47120 NAD(P)-binding Rossmann-fold superfamily protein -0.66 0.33 -0.31
53 AT2G39120 Ubiquitin carboxyl-terminal hydrolase family protein what's this factor 9 0.66 0.31 -0.33
54 AT4G24200 Transcription elongation factor (TFIIS) family protein 0.66 0.32 -0.3
55 AT5G62030 diphthamide synthesis DPH2 family protein 0.65 0.31 -0.31
56 AT4G38090 Ribosomal protein S5 domain 2-like superfamily protein -0.65 0.29 -0.33
57 AT2G40650 PRP38 family protein 0.65 0.31 -0.31
58 AT3G27390 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G40640.1); Has 101 Blast
hits to 99 proteins in 12 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.65 0.29 -0.3
59 AT5G58130 RNA-binding (RRM/RBD/RNP motifs) family protein REPRESSOR OF SILENCING 3 0.65 0.33 -0.33
60 AT1G20920 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.65 0.32 -0.3
61 AT1G51600 ZIM-LIKE 2 GATA TRANSCRIPTION FACTOR 28,
TIFY2A, ZIM-LIKE 2		 0.65 0.32 -0.31
62 AT2G28380 dsRNA-binding protein 2 dsRNA-binding protein 2 0.65 0.31 -0.32
63 AT5G52420 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endoplasmic reticulum; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G23920.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 -0.65 0.32 -0.3
64 AT4G31880 LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 14 growth stages; BEST
Arabidopsis thaliana protein match is: Tudor/PWWP/MBT
superfamily protein (TAIR:AT1G15940.1); Has 137162 Blast
hits to 70781 proteins in 2973 species: Archae - 289;
Bacteria - 24182; Metazoa - 56725; Fungi - 20130; Plants -
6559; Viruses - 758; Other Eukaryotes - 28519 (source: NCBI
BLink).		 0.65 0.33 -0.3
65 AT5G36150 putative pentacyclic triterpene synthase 3 putative pentacyclic triterpene
synthase 3, putative pentacyclic
triterpene synthase 3		 0.64 0.31 -0.31
66 AT3G44280 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G22280.1); Has 82 Blast hits to 82 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.64 0.31 -0.33
67 AT3G19000 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.64 0.32 -0.3
68 AT2G41120 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures;
EXPRESSED DURING: 10 growth stages; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF309
(InterPro:IPR005500); Has 349 Blast hits to 349 proteins in
112 species: Archae - 2; Bacteria - 189; Metazoa - 0; Fungi
- 0; Plants - 31; Viruses - 0; Other Eukaryotes - 127
(source: NCBI BLink).		 -0.64 0.31 -0.32
69 AT5G47720 Thiolase family protein -0.64 0.29 -0.3
70 AT1G08410 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.64 0.32 -0.31
71 AT3G16700 Fumarylacetoacetate (FAA) hydrolase family -0.64 0.31 -0.3
72 AT5G13970 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G13310.1); Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.64 0.31 -0.31
73 AT2G16920 ubiquitin-conjugating enzyme 23 PHO2 FAMILY UBIQUITIN CONJUGATION
ENZYME 2, ubiquitin-conjugating
enzyme 23		 0.64 0.3 -0.35
74 AT5G16780 SART-1 family DEFECTIVELY ORGANIZED TRIBUTARIES
2, MERISTEM-DEFECTIVE		 0.63 0.32 -0.3
75 AT3G27550 RNA-binding CRS1 / YhbY (CRM) domain protein 0.63 0.33 -0.32
76 AT4G30935 WRKY DNA-binding protein 32 ATWRKY32, WRKY DNA-binding protein
32		 0.63 0.32 -0.31
77 AT5G46150 LEM3 (ligand-effect modulator 3) family protein / CDC50
family protein		 -0.63 0.34 -0.31
78 AT1G16460 rhodanese homologue 2 ARABIDOPSIS THALIANA
MERCAPTOPYRUVATE SULFURTRANSFERASE
2, rhodanese homologue 2,
MERCAPTOPYRUVATE SULFURTRANSFERASE
2, rhodanese homologue 2,
SULFURTRANSFERASE 2,
SULFURTRANSFERASE 2		 -0.63 0.31 -0.31
79 AT5G66130 RADIATION SENSITIVE 17 RADIATION SENSITIVE 17, RADIATION
SENSITIVE 17		 0.63 0.29 -0.33
80 AT1G71830 somatic embryogenesis receptor-like kinase 1 SOMATIC EMBRYOGENESIS
RECEPTOR-LIKE KINASE 1, somatic
embryogenesis receptor-like kinase
1		 0.63 0.3 -0.32
81 AT2G35030 Pentatricopeptide repeat (PPR) superfamily protein 0.63 0.31 -0.32
82 AT5G41260 Protein kinase protein with tetratricopeptide repeat domain 0.63 0.32 -0.3
83 AT1G48560 unknown protein; Has 75 Blast hits to 71 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0;
Plants - 69; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 0.63 0.32 -0.34
84 AT4G35130 Tetratricopeptide repeat (TPR)-like superfamily protein 0.63 0.32 -0.32
85 AT5G27710 unknown protein; Has 49 Blast hits to 49 proteins in 17
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 48; Viruses - 0; Other Eukaryotes - 1 (source:
NCBI BLink).		 -0.62 0.31 -0.3
86 AT4G04320 malonyl-CoA decarboxylase family protein -0.62 0.32 -0.31
87 AT1G78550 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.62 0.3 -0.31
88 AT5G09740 histone acetyltransferase of the MYST family 2 histone acetyltransferase of the
MYST family 2		 -0.61 0.3 -0.33
89 AT4G19045 Mob1/phocein family protein -0.6 0.32 -0.29
90 AT2G02350 SKP1 interacting partner 3 Phloem protein 2-B9, SKP1
interacting partner 3		 -0.6 0.31 -0.29
91 AT3G24010 RING/FYVE/PHD zinc finger superfamily protein ARABIDOPSIS THALIANA INHIBITOR OF
GROWTH 1, INHIBITOR OF GROWTH 1		 -0.6 0.32 -0.32
92 AT2G43980 inositol 1,3,4-trisphosphate 5/6-kinase 4 inositol 1,3,4-trisphosphate
5/6-kinase 4, inositol
1,3,4-trisphosphate 5/6-kinase 4		 -0.6 0.31 -0.33
93 AT5G12310 RING/U-box superfamily protein -0.6 0.31 -0.31
94 AT1G01160 GRF1-interacting factor 2 GRF1-interacting factor 2 -0.58 0.33 -0.29
95 AT5G28020 cysteine synthase D2 CYSTEINE SYNTHASE D2, cysteine
synthase D2		 -0.58 0.29 -0.33
96 AT5G18350 Disease resistance protein (TIR-NBS-LRR class) family -0.57 0.32 -0.32
97 AT2G36920 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT4G02870.1); Has 13 Blast hits to 11
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.57 0.33 -0.33
98 AT3G30220 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G43150.1); Has 30 Blast hits
to 30 proteins in 3 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.57 0.33 -0.33
99 AT4G39490 cytochrome P450, family 96, subfamily A, polypeptide 10 cytochrome P450, family 96,
subfamily A, polypeptide 10		 -0.57 0.31 -0.32
100 AT4G04170 transposable element gene -0.57 0.31 -0.31
101 AT2G18470 roline-rich extensin-like receptor kinase 4 proline-rich extensin-like
receptor kinase 4, proline-rich
extensin-like receptor kinase 4		 -0.57 0.33 -0.31
102 AT2G03630 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G74220.1); Has 126 Blast hits
to 126 proteins in 28 species: Archae - 0; Bacteria - 6;
Metazoa - 7; Fungi - 5; Plants - 87; Viruses - 0; Other
Eukaryotes - 21 (source: NCBI BLink).		 -0.57 0.31 -0.32
103 AT2G29250 Concanavalin A-like lectin protein kinase family protein -0.56 0.31 -0.32
104 AT4G16710 glycosyltransferase family protein 28 -0.56 0.32 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
105 C0018 sn-Glycerol-3-phosphate D,L-sn-Glycerol-3-phosphate sn-Glycerol-3-phosphate CDP-diacylglycerol biosynthesis II,
phosphatidylglycerol biosynthesis II (non-plastidic),
triacylglycerol biosynthesis,
glycerol degradation IV,
glycerol-3-phosphate shuttle,
a quinone + sn-glycerol-3-phosphate -> a quinol + dihydroxyacetone phosphate,
CDP-diacylglycerol biosynthesis I,
cardiolipin biosynthesis II,
phosphatidylglycerol biosynthesis I (plastidic),
sn-glycerol-3-phosphate + a ubiquinone -> a ubiquinol + dihydroxyacetone phosphate,
an electron-transfer-related quinone + sn-glycerol-3-phosphate -> an electron-transfer-related quinol + dihydroxyacetone phosphate 		-0.66 0.47 -0.43 C0018