AT3G22680 : RNA-DIRECTED DNA METHYLATION 1
Query Information
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AGICode AT3G22680
Description RNA-DIRECTED DNA METHYLATION 1
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G22680 RNA-DIRECTED DNA METHYLATION 1 RNA-DIRECTED DNA METHYLATION 1 1 0.32 -0.31
2 AT3G63390 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.78 0.31 -0.31
3 AT1G27650 U2 snRNP auxiliary factor small subunit, putative ATU2AF35A 0.71 0.33 -0.33
4 AT5G61810 Mitochondrial substrate carrier family protein ATP/phosphate carrier 1 -0.71 0.32 -0.35
5 AT4G11240 Calcineurin-like metallo-phosphoesterase superfamily
protein		 TOPP7 0.7 0.31 -0.34
6 AT5G11610 Exostosin family protein -0.7 0.32 -0.32
7 AT1G27920 microtubule-associated protein 65-8 microtubule-associated protein
65-8		 -0.69 0.32 -0.34
8 AT4G36490 SEC14-like 12 SEC14-LIKE 12, SEC14-like 12 0.69 0.3 -0.3
9 AT5G55140 ribosomal protein L30 family protein 0.69 0.32 -0.31
10 AT1G75590 SAUR-like auxin-responsive protein family 0.66 0.31 -0.32
11 AT4G22850 SNARE associated Golgi protein family 0.64 0.32 -0.3
12 AT1G49400 Nucleic acid-binding, OB-fold-like protein embryo defective 1129 0.63 0.3 -0.31
13 AT1G17350 NADH:ubiquinone oxidoreductase intermediate-associated
protein 30		 0.63 0.32 -0.31
14 AT4G18270 translocase 11 ARABIDOPSIS THALIANA TRANSLOCASE
11, translocase 11		 -0.63 0.34 -0.31
15 AT3G14720 MAP kinase 19 ARABIDOPSIS THALIANA MAP KINASE
19, MAP kinase 19		 -0.62 0.32 -0.3
16 AT5G13890 Family of unknown function (DUF716) 0.62 0.32 -0.32
17 AT1G32810 RING/FYVE/PHD zinc finger superfamily protein -0.62 0.32 -0.31
18 AT1G67230 little nuclei1 CROWDED NUCLEI 1, LITTLE NUCLEI1 -0.61 0.33 -0.31
19 AT1G21910 Integrase-type DNA-binding superfamily protein dehydration response
element-binding protein 26		 0.61 0.31 -0.34
20 AT1G05205 unknown protein; Has 44 Blast hits to 44 proteins in 16
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.61 0.31 -0.34
21 AT4G31820 Phototropic-responsive NPH3 family protein ENHANCER OF PINOID, MACCHI-BOU 4,
NAKED PINS IN YUC MUTANTS 1		 -0.61 0.33 -0.33
22 AT3G50070 CYCLIN D3;3 CYCLIN D3;3 0.6 0.33 -0.29
23 AT5G45610 protein dimerizations SENSITIVE TO UV 2 -0.6 0.33 -0.28
24 AT1G10090 Early-responsive to dehydration stress protein (ERD4) -0.6 0.3 -0.3
25 AT1G12560 expansin A7 ATEXP7, expansin A7, ATHEXP ALPHA
1.26, EXP7, expansin A7		 0.6 0.34 -0.32
26 AT5G39600 CONTAINS InterPro DOMAIN/s: Ribosomal protein L53,
mitochondrial (InterPro:IPR019716); Has 50 Blast hits to 50
proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa -
6; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes -
2 (source: NCBI BLink).		 0.6 0.31 -0.3
27 AT3G27770 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G62960.1); Has 158 Blast hits to 157 proteins in
21 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi -
0; Plants - 141; Viruses - 0; Other Eukaryotes - 4 (source:
NCBI BLink).		 0.6 0.31 -0.31
28 AT3G51910 heat shock transcription factor A7A ARABIDOPSIS THALIANA HEAT SHOCK
TRANSCRIPTION FACTOR A7A, heat
shock transcription factor A7A		 0.6 0.32 -0.34
29 AT1G66460 Protein kinase superfamily protein -0.6 0.31 -0.32
30 AT2G48060 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: shoot, sperm cell;
CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF3595 (InterPro:IPR021999); Has 533 Blast hits to 341
proteins in 95 species: Archae - 2; Bacteria - 15; Metazoa
- 318; Fungi - 0; Plants - 93; Viruses - 0; Other
Eukaryotes - 105 (source: NCBI BLink).		 -0.59 0.32 -0.32
31 AT4G20840 FAD-binding Berberine family protein 0.59 0.31 -0.34
32 AT1G62090 pseudogene, protein kinase family, similar to light
repressible receptor protein kinase (LRRPK) (Arabidopsis
thaliana) GI:1321686; contains Pfam profiles PF02536:
mTERF, PF00069: Protein kinase domain, PF00560: Leucine
Rich Repeat; blastp match of 38% identity and 1.7e-162
P-value to GP|9837280|gb|AAG00510.1||AF285172 leaf
senescence-associated receptor-like protein kinase
{Phaseolus vulgaris}		 0.59 0.31 -0.3
33 AT1G17110 ubiquitin-specific protease 15 ubiquitin-specific protease 15 -0.59 0.34 -0.29
34 AT5G38070 RING/FYVE/PHD zinc finger superfamily protein -0.59 0.32 -0.32
35 AT4G38980 unknown protein; Has 44 Blast hits to 44 proteins in 19
species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 8;
Plants - 24; Viruses - 0; Other Eukaryotes - 8 (source:
NCBI BLink).		 0.59 0.3 -0.31
36 AT5G65480 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G38060.2); Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 -0.58 0.32 -0.32
37 AT3G26730 RING/U-box superfamily protein -0.58 0.31 -0.31
38 AT1G49660 carboxyesterase 5 carboxyesterase 5, carboxyesterase
5		 0.58 0.3 -0.32
39 AT5G38390 F-box/RNI-like superfamily protein 0.58 0.32 -0.3
40 AT5G17010 Major facilitator superfamily protein -0.58 0.3 -0.31
41 AT1G67850 Protein of unknown function (DUF707) -0.57 0.33 -0.3
42 AT5G55960 unknown protein; CONTAINS InterPro DOMAIN/s:
Uncharacterised protein family UPF0118
(InterPro:IPR002549); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 -0.57 0.31 -0.31
43 AT3G19090 RNA-binding protein -0.57 0.31 -0.32
44 AT3G17890 unknown protein; Has 31 Blast hits to 31 proteins in 12
species: Archae - 0; Bacteria - 4; Metazoa - 5; Fungi - 10;
Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.57 0.31 -0.3
45 AT3G22121 other RNA -0.57 0.3 -0.3
46 AT1G77270 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G07730.1); Has 428 Blast hits
to 388 proteins in 92 species: Archae - 0; Bacteria - 31;
Metazoa - 189; Fungi - 10; Plants - 97; Viruses - 0; Other
Eukaryotes - 101 (source: NCBI BLink).		 -0.57 0.33 -0.33
47 AT1G05410 Protein of unknown function (DUF1423) 0.57 0.31 -0.32
48 AT3G06990 Cysteine/Histidine-rich C1 domain family protein 0.57 0.29 -0.3
49 AT4G17480 alpha/beta-Hydrolases superfamily protein -0.57 0.29 -0.29
50 AT4G34970 actin depolymerizing factor 9 actin depolymerizing factor 9 0.57 0.3 -0.32
51 AT1G48690 Auxin-responsive GH3 family protein 0.56 0.32 -0.32
52 AT1G12910 Transducin/WD40 repeat-like superfamily protein ANTHOCYANIN11, LIGHT-REGULATED WD
1		 0.56 0.31 -0.31
53 AT2G01330 nucleotide binding -0.56 0.32 -0.33
54 AT4G24010 cellulose synthase like G1 ARABIDOPSIS THALIANA CELLULOSE
SYNTHASE LIKE G1, cellulose
synthase like G1		 -0.56 0.32 -0.3
55 AT4G29440 Regulator of Vps4 activity in the MVB pathway protein -0.56 0.33 -0.32
56 AT3G56710 sigma factor binding protein 1 sigma factor binding protein 1 -0.55 0.32 -0.33
57 AT5G37180 sucrose synthase 5 ARABIDOPSIS THALIANA SUCROSE
SYNTHASE 5, sucrose synthase 5		 -0.55 0.33 -0.31
58 AT5G64530 xylem NAC domain 1 Arabidopsis NAC domain containing
protein 104, xylem NAC domain 1		 -0.55 0.32 -0.33
59 AT1G02260 Divalent ion symporter -0.55 0.32 -0.31
60 AT3G05270 Plant protein of unknown function (DUF869) -0.55 0.31 -0.3
61 AT2G28810 Dof-type zinc finger DNA-binding family protein -0.55 0.31 -0.32
62 AT1G73840 hydroxyproline-rich glycoprotein family protein ENHANCED SILENCING PHENOTYPE 1 0.55 0.33 -0.32
63 AT2G32430 Galactosyltransferase family protein -0.55 0.32 -0.32
64 AT1G28410 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 15 growth stages; BEST Arabidopsis thaliana protein
match is: myosin heavy chain-related (TAIR:AT4G31340.2);
Has 425 Blast hits to 402 proteins in 77 species: Archae -
4; Bacteria - 22; Metazoa - 249; Fungi - 4; Plants - 98;
Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).		 0.55 0.32 -0.32
65 AT3G16980 RNA polymerases M/15 Kd subunit NRPB9A, NRPD9A, NRPE9A 0.55 0.33 -0.34
66 AT5G26610 D111/G-patch domain-containing protein -0.54 0.3 -0.31
67 AT3G13810 indeterminate(ID)-domain 11 indeterminate(ID)-domain 11,
indeterminate(ID)-domain 11		 -0.54 0.32 -0.3
68 AT5G18550 Zinc finger C-x8-C-x5-C-x3-H type family protein -0.54 0.31 -0.31
69 AT3G07420 asparaginyl-tRNA synthetase 2 ASPARAGINYL-TRNA SYNTHETASE 2,
asparaginyl-tRNA synthetase 2,
SYNTHETASE C2, ASPARAGINYL-TRNA
SYNTHETASE 2		 -0.53 0.32 -0.33
70 AT3G61390 RING/U-box superfamily protein -0.53 0.32 -0.3
71 AT1G10090 Early-responsive to dehydration stress protein (ERD4) -0.53 0.33 -0.32
72 AT1G47885 Ribonuclease inhibitor -0.53 0.32 -0.32
73 AT5G22540 Plant protein of unknown function (DUF247) -0.53 0.3 -0.33
74 AT1G01740 Protein kinase protein with tetratricopeptide repeat domain -0.51 0.31 -0.3
75 AT4G39170 Sec14p-like phosphatidylinositol transfer family protein -0.51 0.33 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
76 C0107 Glycine - Glycine 5-aminoimidazole ribonucleotide biosynthesis I,
gamma-glutamyl cycle,
folate polyglutamylation,
gamma-glutamyl cycle (plant pathway),
glutathione biosynthesis,
glutathione-mediated detoxification II,
folate transformations II,
indole glucosinolate breakdown (active in intact plant cell),
glycine cleavage complex,
camalexin biosynthesis,
thiamine biosynthesis II,
tRNA charging,
glycine biosynthesis,
glutathione degradation,
photorespiration 		-0.74 0.45 -0.44 C0107