AT3G14400 : ubiquitin-specific protease 25
Query Information
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AGICode AT3G14400
Description ubiquitin-specific protease 25
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G14400 ubiquitin-specific protease 25 ubiquitin-specific protease 25 1 0.3 -0.31
2 AT5G52850 Pentatricopeptide repeat (PPR) superfamily protein 0.78 0.32 -0.32
3 AT1G69330 RING/U-box superfamily protein 0.78 0.31 -0.34
4 AT5G40520 unknown protein; Has 3679 Blast hits to 2474 proteins in
390 species: Archae - 10; Bacteria - 571; Metazoa - 1012;
Fungi - 528; Plants - 214; Viruses - 74; Other Eukaryotes -
1270 (source: NCBI BLink).		 0.76 0.32 -0.32
5 AT5G20360 Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein
/ tetratricopeptide repeat (TPR)-containing protein		 Phox3 0.75 0.32 -0.32
6 AT3G51320 Pentatricopeptide repeat (PPR) superfamily protein 0.74 0.32 -0.33
7 AT3G16890 pentatricopeptide (PPR) domain protein 40 pentatricopeptide (PPR) domain
protein 40		 0.74 0.32 -0.31
8 AT1G30290 Tetratricopeptide repeat (TPR)-like superfamily protein 0.73 0.32 -0.35
9 AT1G49150 unknown protein; Has 6 Blast hits to 6 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.73 0.31 -0.31
10 AT1G68480 C2H2 and C2HC zinc fingers superfamily protein JAGGED 0.72 0.34 -0.32
11 AT2G19830 SNF7 family protein SNF7.2, VPS32 -0.72 0.33 -0.3
12 AT5G42400 SET domain protein 25 ARABIDOPSIS TRITHORAX-RELATED7,
SET domain protein 25		 0.72 0.32 -0.32
13 AT4G19000 Transcription elongation factor (TFIIS) family protein ARABIDOPSIS THALIANA IWS2 (FROM
YEAST INTERACTS WITH SPT6), IWS2		 0.72 0.34 -0.31
14 AT3G59910 Ankyrin repeat family protein 0.71 0.33 -0.3
15 AT1G44770 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G49710.3); Has 81 Blast hits
to 81 proteins in 17 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.7 0.32 -0.3
16 AT2G05850 serine carboxypeptidase-like 38 serine carboxypeptidase-like 38 -0.7 0.31 -0.33
17 AT2G27380 extensin proline-rich 1 extensin proline-rich 1, extensin
proline-rich 1		 0.7 0.31 -0.35
18 AT3G56740 Ubiquitin-associated (UBA) protein -0.7 0.3 -0.3
19 AT2G05900 SET domain protein 11 SET domain protein 11, SU(VAR)3-9
HOMOLOG 10		 0.7 0.31 -0.3
20 AT1G30350 Pectin lyase-like superfamily protein 0.7 0.29 -0.31
21 AT1G28070 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G33510.1); Has 85 Blast hits
to 77 proteins in 15 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.7 0.31 -0.33
22 AT3G25890 Integrase-type DNA-binding superfamily protein cytokinin response factor 11 0.69 0.32 -0.32
23 AT4G16120 COBRA-like protein-7 precursor ARABIDOPSIS THALIANA SEC61 BETA 1,
COBRA-like protein-7 precursor,
SEC61 BETA 1		 0.69 0.3 -0.31
24 AT2G22410 SLOW GROWTH 1 SLOW GROWTH 1 0.69 0.31 -0.31
25 AT5G06810 Mitochondrial transcription termination factor family
protein		 0.69 0.33 -0.33
26 AT1G66090 Disease resistance protein (TIR-NBS class) -0.68 0.31 -0.32
27 AT5G66130 RADIATION SENSITIVE 17 RADIATION SENSITIVE 17, RADIATION
SENSITIVE 17		 0.68 0.31 -0.29
28 AT4G18530 Protein of unknown function (DUF707) -0.68 0.32 -0.32
29 AT5G52860 ABC-2 type transporter family protein ATP-binding cassette G8 0.68 0.33 -0.32
30 AT1G26370 RNA helicase family protein 0.67 0.31 -0.32
31 AT1G15870 Mitochondrial glycoprotein family protein 0.67 0.32 -0.3
32 AT2G34470 urease accessory protein G PSKF109, urease accessory protein
G		 -0.67 0.32 -0.3
33 AT2G41080 Tetratricopeptide repeat (TPR)-like superfamily protein 0.67 0.31 -0.3
34 AT5G06320 NDR1/HIN1-like 3 NDR1/HIN1-like 3 -0.67 0.32 -0.31
35 AT5G11290 Plant protein of unknown function (DUF247) 0.67 0.31 -0.31
36 AT1G77230 Tetratricopeptide repeat (TPR)-like superfamily protein 0.67 0.33 -0.3
37 AT1G14020 O-fucosyltransferase family protein 0.66 0.32 -0.31
38 AT3G17690 cyclic nucleotide gated channel 19 CYCLIC NUCLEOTIDE-GATED CHANNEL
19, cyclic nucleotide gated
channel 19		 -0.66 0.3 -0.29
39 AT3G55600 Membrane fusion protein Use1 -0.66 0.32 -0.31
40 AT1G05750 Tetratricopeptide repeat (TPR)-like superfamily protein CLB19, pigment defective 247 0.66 0.33 -0.29
41 AT5G17930 MIF4G domain-containing protein / MA3 domain-containing
protein		 0.66 0.33 -0.32
42 AT3G27700 zinc finger (CCCH-type) family protein / RNA recognition
motif (RRM)-containing protein		 0.66 0.29 -0.32
43 AT1G50760 Aminotransferase-like, plant mobile domain family protein 0.66 0.3 -0.33
44 AT1G34160 Tetratricopeptide repeat (TPR)-like superfamily protein 0.66 0.32 -0.31
45 AT1G21710 8-oxoguanine-DNA glycosylase 1 ARABIDOPSIS 8-OXOGUANINE-DNA
GLYCOSYLASE 1, 8-oxoguanine-DNA
glycosylase 1		 0.65 0.3 -0.31
46 AT1G16830 Pentatricopeptide repeat (PPR) superfamily protein 0.65 0.32 -0.3
47 AT4G34150 Calcium-dependent lipid-binding (CaLB domain) family
protein		 -0.65 0.31 -0.33
48 AT5G66960 Prolyl oligopeptidase family protein 0.65 0.33 -0.32
49 AT2G19640 ASH1-related protein 2 ASH1-related 2, SET DOMAIN PROTEIN
39		 0.65 0.33 -0.33
50 AT1G04050 homolog of SU(var)3-9 1 SET DOMAIN PROTEIN 13, homolog of
SU(var)3-9 1		 0.65 0.29 -0.31
51 AT1G50740 Transmembrane proteins 14C -0.65 0.34 -0.31
52 AT3G50420 Pentatricopeptide repeat (PPR) superfamily protein 0.65 0.3 -0.31
53 AT1G67570 Protein of unknown function (DUF3537) 0.65 0.32 -0.31
54 AT4G30770 Putative membrane lipoprotein 0.64 0.3 -0.34
55 AT1G17470 developmentally regulated G-protein 1 ATDRG, developmentally regulated
G-protein 1, developmentally
regulated G-protein 1		 0.64 0.33 -0.32
56 AT1G26300 BSD domain-containing protein -0.64 0.31 -0.33
57 AT3G55050 Protein phosphatase 2C family protein 0.64 0.33 -0.34
58 AT4G03480 Ankyrin repeat family protein -0.64 0.33 -0.29
59 AT2G21480 Malectin/receptor-like protein kinase family protein 0.64 0.31 -0.33
60 AT3G56880 VQ motif-containing protein -0.64 0.31 -0.32
61 AT1G53510 mitogen-activated protein kinase 18 ARABIDOPSIS THALIANA MAP KINASE
18, mitogen-activated protein
kinase 18		 0.64 0.32 -0.34
62 AT4G26160 atypical CYS HIS rich thioredoxin 1 atypical CYS HIS rich thioredoxin
1		 -0.64 0.32 -0.33
63 AT1G68360 C2H2 and C2HC zinc fingers superfamily protein -0.64 0.32 -0.31
64 AT1G49040 stomatal cytokinesis defective / SCD1 protein (SCD1) STOMATAL CYTOKINESIS-DEFECTIVE 1 0.64 0.31 -0.31
65 AT5G46330 Leucine-rich receptor-like protein kinase family protein FLAGELLIN-SENSITIVE 2 0.63 0.31 -0.31
66 AT3G15120 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.63 0.3 -0.31
67 AT2G46060 transmembrane protein-related 0.63 0.34 -0.32
68 AT1G06630 F-box/RNI-like superfamily protein -0.63 0.3 -0.32
69 AT2G48160 Tudor/PWWP/MBT domain-containing protein 0.63 0.31 -0.3
70 AT2G23920 unknown protein; INVOLVED IN: N-terminal protein
myristoylation; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.63 0.33 -0.31
71 AT1G36990 unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 24
plant structures; EXPRESSED DURING: 14 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT4G08510.1); Has 5029 Blast hits to 1779 proteins in
339 species: Archae - 2; Bacteria - 1372; Metazoa - 990;
Fungi - 933; Plants - 111; Viruses - 28; Other Eukaryotes -
1593 (source: NCBI BLink).		 0.63 0.32 -0.3
72 AT5G57320 villin, putative villin 5 0.63 0.32 -0.32
73 AT1G17630 Pentatricopeptide repeat (PPR-like) superfamily protein 0.63 0.31 -0.29
74 AT2G32510 mitogen-activated protein kinase kinase kinase 17 mitogen-activated protein kinase
kinase kinase 17		 -0.63 0.34 -0.33
75 AT2G14810 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.62 0.3 -0.33
76 AT5G66160 receptor homology region transmembrane domain ring H2 motif
protein 1		 ARABIDOPSIS THALIANA RECEPTOR
HOMOLOGY REGION TRANSMEMBRANE
DOMAIN RING H2 MOTIF PROTEIN 1,
receptor homology region
transmembrane domain ring H2 motif
protein 1		 -0.62 0.29 -0.3
77 AT2G27260 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 -0.62 0.29 -0.33
78 AT4G08210 Pentatricopeptide repeat (PPR-like) superfamily protein 0.62 0.3 -0.33
79 AT1G46912 F-box associated ubiquitination effector family protein 0.62 0.31 -0.31
80 AT1G19290 Pentatricopeptide repeat (PPR) superfamily protein 0.62 0.32 -0.29
81 AT5G44440 FAD-binding Berberine family protein 0.62 0.34 -0.29
82 AT4G36890 Nucleotide-diphospho-sugar transferases superfamily protein irregular xylem 14 0.62 0.31 -0.3
83 AT3G05090 Transducin/WD40 repeat-like superfamily protein LATERAL ROOT STIMULATOR 1 0.62 0.32 -0.3
84 AT5G44800 chromatin remodeling 4 chromatin remodeling 4, PICKLE
RELATED 1		 0.62 0.32 -0.3
85 AT5G19480 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G12230.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 -0.62 0.31 -0.31
86 AT3G20190 Leucine-rich repeat protein kinase family protein -0.62 0.34 -0.31
87 AT4G28400 Protein phosphatase 2C family protein -0.62 0.3 -0.31
88 AT2G06640 transposable element gene -0.62 0.32 -0.31
89 AT4G15955 alpha/beta-Hydrolases superfamily protein -0.62 0.33 -0.31
90 AT1G79990 structural molecules 0.62 0.33 -0.32
91 AT2G01270 quiescin-sulfhydryl oxidase 2 quiescin-sulfhydryl oxidase 2,
quiescin-sulfhydryl oxidase 2		 0.62 0.31 -0.3
92 AT3G07565 Protein of unknown function (DUF3755) -0.61 0.35 -0.35
93 AT1G75290 NAD(P)-binding Rossmann-fold superfamily protein -0.61 0.32 -0.32
94 AT3G09735 S1FA-like DNA-binding protein -0.6 0.32 -0.34
95 AT3G07880 Immunoglobulin E-set superfamily protein SUPERCENTIPEDE1 -0.6 0.32 -0.31
96 AT1G72960 Root hair defective 3 GTP-binding protein (RHD3) -0.6 0.32 -0.33
97 AT1G35515 high response to osmotic stress 10 high response to osmotic stress
10, MYB8		 -0.6 0.32 -0.3
98 AT5G64310 arabinogalactan protein 1 arabinogalactan protein 1, ATAGP1 -0.6 0.33 -0.3
99 AT5G37770 EF hand calcium-binding protein family CALMODULIN-LIKE 24, TOUCH 2 -0.59 0.32 -0.31
100 AT4G32560 paramyosin-related -0.59 0.32 -0.3
101 AT3G50210 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.59 0.3 -0.31
102 AT5G45970 RAC-like 2 Arabidopsis RAC-like 2,
ARABIDOPSIS THALIANA RAC 2,
RHO-RELATED PROTEIN FROM PLANTS 7,
RAC-like 2, ROP7		 -0.59 0.32 -0.31
103 AT4G30440 UDP-D-glucuronate 4-epimerase 1 UDP-D-glucuronate 4-epimerase 1 -0.59 0.33 -0.3
104 AT1G76600 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
nucleolus, nucleus; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G21010.1); Has 220 Blast hits to 220 proteins in
14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 220; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.58 0.32 -0.32
105 AT5G07710 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 -0.58 0.33 -0.3
106 AT3G56700 fatty acid reductase 6 AtFAR6, fatty acid reductase 6 -0.57 0.31 -0.32
107 AT3G55980 salt-inducible zinc finger 1 ATSZF1, salt-inducible zinc finger
1		 -0.57 0.32 -0.32
108 AT2G47060 Protein kinase superfamily protein Pto-interacting 1-4 -0.57 0.31 -0.31
109 AT5G38670 Galactose oxidase/kelch repeat superfamily protein -0.57 0.33 -0.3
110 AT5G22280 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT3G44280.1); Has 82 Blast hits to 82 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.57 0.32 -0.31
111 AT1G51690 protein phosphatase 2A 55 kDa regulatory subunit B alpha
isoform		 protein phosphatase 2A 55 kDa
regulatory subunit B alpha
isoform, protein phosphatase 2A 55
kDa regulatory subunit B alpha
isoform		 -0.57 0.31 -0.29
112 AT1G32840 transposable element gene -0.56 0.33 -0.34
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
113 C0252 Threonic acid D,L-Threonic acid L-Threonate ascorbic acid degradation -0.68 0.47 -0.44 C0252