AT3G22380 : TIME FOR COFFEE
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AGICode AT3G22380
Description time for coffee
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G22380 time for coffee TIME FOR COFFEE 1 0.32 -0.31
2 AT3G50380 Protein of unknown function (DUF1162) 0.82 0.3 -0.33
3 AT1G16000 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G80890.1); Has 41 Blast hits
to 40 proteins in 10 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).
-0.8 0.3 -0.31
4 AT4G27270 Quinone reductase family protein -0.78 0.29 -0.33
5 AT1G07960 PDI-like 5-1 PDI-like 5-1, PDI-like 5-1 -0.78 0.33 -0.33
6 AT3G01560 Protein of unknown function (DUF1421) 0.77 0.33 -0.3
7 AT1G73940 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G49410.2); Has 54 Blast hits
to 54 proteins in 11 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).
-0.77 0.33 -0.3
8 AT1G17440 Transcription initiation factor TFIID subunit A CYTOKININ-HYPERSENSITIVE 1,
ENHANCED ETHYLENE RESPONSE 4,
TBP-ASSOCIATED FACTOR 12B
0.77 0.33 -0.34
9 AT2G36390 starch branching enzyme 2.1 BRANCHING ENZYME 3, starch
branching enzyme 2.1
0.77 0.32 -0.33
10 AT3G08020 PHD finger family protein 0.77 0.31 -0.3
11 AT3G05030 sodium hydrogen exchanger 2 ATNHX2, sodium hydrogen exchanger
2
0.76 0.31 -0.33
12 AT1G13950 eukaryotic elongation factor 5A-1 EUKARYOTIC ELONGATION FACTOR 5A-1,
EIF-5A, EUKARYOTIC ELONGATION
FACTOR 5A, eukaryotic elongation
factor 5A-1
-0.76 0.33 -0.3
13 AT1G43850 SEUSS transcriptional co-regulator seuss 0.75 0.32 -0.32
14 AT5G20840 Phosphoinositide phosphatase family protein 0.75 0.32 -0.32
15 AT1G14980 chaperonin 10 chaperonin 10 -0.74 0.31 -0.31
16 AT3G05150 Major facilitator superfamily protein -0.74 0.32 -0.34
17 AT5G47020 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G11700.2); Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).
0.74 0.31 -0.29
18 AT4G32840 phosphofructokinase 6 phosphofructokinase 6 -0.74 0.32 -0.3
19 AT1G74030 enolase 1 enolase 1 -0.74 0.31 -0.31
20 AT4G22720 Actin-like ATPase superfamily protein -0.74 0.31 -0.33
21 AT2G32380 Transmembrane protein 97, predicted -0.74 0.31 -0.32
22 AT1G77800 PHD finger family protein 0.73 0.33 -0.32
23 AT5G61810 Mitochondrial substrate carrier family protein ATP/phosphate carrier 1 0.73 0.33 -0.32
24 AT1G76580 Squamosa promoter-binding protein-like (SBP domain)
transcription factor family protein
0.73 0.31 -0.33
25 AT1G55970 histone acetyltransferase of the CBP family 4 HAC04, histone acetyltransferase
of the CBP family 4, HISTONE
ACETYLTRANSFERASE OF THE CBP
FAMILY 6, HISTONE
ACETYLTRANSFERASE OF THE GNAT/MYST
SUPERFAMILY 04, HISTONE
ACETYLTRANSFERASE OF THE GNAT/MYST
SUPERFAMILY 4
0.73 0.33 -0.33
26 AT2G30060 Pleckstrin homology (PH) domain superfamily protein -0.73 0.29 -0.3
27 AT4G37660 Ribosomal protein L12/ ATP-dependent Clp protease adaptor
protein ClpS family protein
-0.73 0.32 -0.29
28 AT2G20480 unknown protein; Has 19 Blast hits to 19 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).
-0.72 0.32 -0.32
29 AT3G01310 Phosphoglycerate mutase-like family protein 0.72 0.31 -0.3
30 AT1G24706 THO2 AtTHO2, EMBRYO DEFECTIVE 2793,
THO2
0.72 0.31 -0.32
31 AT5G62090 SEUSS-like 2 SEUSS-like 2 0.72 0.34 -0.32
32 AT5G26570 catalytics;carbohydrate kinases;phosphoglucan, water
dikinases
ATGWD3, OK1, PHOSPHOGLUCAN WATER
DIKINASE
0.72 0.29 -0.33
33 AT5G44180 Homeodomain-like transcriptional regulator 0.71 0.32 -0.3
34 AT1G19360 Nucleotide-diphospho-sugar transferase family protein reduced residual arabinose 3 -0.71 0.32 -0.33
35 AT4G36420 Ribosomal protein L12 family protein -0.71 0.31 -0.31
36 AT1G20050 C-8,7 sterol isomerase HYDRA1 -0.71 0.32 -0.32
37 AT5G24740 Protein of unknown function (DUF1162) 0.71 0.31 -0.3
38 AT5G15350 early nodulin-like protein 17 AtENODL17, early nodulin-like
protein 17
-0.71 0.33 -0.33
39 AT5G62000 auxin response factor 2 ARF1-BINDING PROTEIN, auxin
response factor 2, HLS1
SUPPRESSOR, ORESARA 14
0.71 0.32 -0.3
40 AT4G33210 F-box family protein SLOW MOTION 0.71 0.31 -0.32
41 AT4G35300 tonoplast monosaccharide transporter2 tonoplast monosaccharide
transporter2
0.71 0.32 -0.31
42 AT4G17870 Polyketide cyclase/dehydrase and lipid transport
superfamily protein
PYRABACTIN RESISTANCE 1,
regulatory component of ABA
receptor 11
-0.71 0.31 -0.32
43 AT2G34050 INVOLVED IN: protein complex assembly; LOCATED IN:
mitochondrion, chloroplast; EXPRESSED IN: 19 plant
structures; EXPRESSED DURING: 9 growth stages; CONTAINS
InterPro DOMAIN/s: ATP11 (InterPro:IPR010591); Has 304
Blast hits to 304 proteins in 167 species: Archae - 0;
Bacteria - 0; Metazoa - 101; Fungi - 112; Plants - 39;
Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).
-0.71 0.31 -0.3
44 AT5G54900 RNA-binding protein 45A RNA-binding protein 45A,
RNA-binding protein 45A
-0.71 0.31 -0.33
45 AT5G49010 DNA replication protein-related EMBRYO DEFECTIVE 2812, SYNTHETIC
LETHALITY WITH DPB11-1 5
-0.71 0.3 -0.3
46 AT3G20300 Protein of unknown function (DUF3537) 0.71 0.33 -0.31
47 AT1G26740 Ribosomal L32p protein family -0.71 0.3 -0.33
48 AT2G35605 SWIB/MDM2 domain superfamily protein -0.71 0.33 -0.31
49 AT1G77750 Ribosomal protein S13/S18 family -0.71 0.31 -0.33
50 AT3G59650 mitochondrial ribosomal protein L51/S25/CI-B8 family
protein
-0.71 0.33 -0.33
51 AT3G16940 calmodulin binding;transcription regulators 0.7 0.3 -0.32
52 AT1G55680 Transducin/WD40 repeat-like superfamily protein 0.7 0.32 -0.3
53 AT4G29430 ribosomal protein S15A E ribosomal protein S15A E -0.7 0.3 -0.31
54 AT1G80560 isopropylmalate dehydrogenase 2 ARABIDOPSIS ISOPROPYLMALATE
DEHYDROGENASE 2, isopropylmalate
dehydrogenase 2
-0.7 0.3 -0.32
55 AT4G35490 mitochondrial ribosomal protein L11 mitochondrial ribosomal protein
L11
-0.7 0.31 -0.32
56 AT5G66320 GATA transcription factor 5 GATA transcription factor 5 0.7 0.3 -0.32
57 AT4G35850 Pentatricopeptide repeat (PPR) superfamily protein -0.7 0.31 -0.31
58 AT1G10760 Pyruvate phosphate dikinase, PEP/pyruvate binding domain GWD, GWD1, STARCH EXCESS 1, SOP,
SOP1
0.7 0.33 -0.32
59 AT1G13910 Leucine-rich repeat (LRR) family protein 0.7 0.32 -0.3
60 AT5G22760 PHD finger family protein 0.7 0.31 -0.33
61 AT1G02080 transcription regulators 0.7 0.31 -0.3
62 AT3G23340 casein kinase I-like 10 casein kinase I-like 10 0.7 0.32 -0.32
63 AT4G18270 translocase 11 ARABIDOPSIS THALIANA TRANSLOCASE
11, translocase 11
0.7 0.31 -0.32
64 AT2G18440 GUT15 (GENE WITH UNSTABLE TRANSCRIPT 15); other RNA GENE WITH UNSTABLE TRANSCRIPT 15 0.69 0.31 -0.32
65 AT3G63070 Tudor/PWWP/MBT domain-containing protein 0.69 0.31 -0.33
66 AT2G33440 RNA-binding (RRM/RBD/RNP motifs) family protein 0.69 0.3 -0.32
67 AT5G12140 cystatin-1 cystatin-1, cystatin-1 0.69 0.34 -0.3
68 AT2G37700 Fatty acid hydroxylase superfamily -0.69 0.32 -0.32
69 AT5G11340 Acyl-CoA N-acyltransferases (NAT) superfamily protein -0.69 0.31 -0.32
70 AT3G07950 rhomboid protein-related -0.69 0.34 -0.27
71 AT1G05205 unknown protein; Has 44 Blast hits to 44 proteins in 16
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).
-0.69 0.33 -0.31
72 AT1G49410 translocase of the outer mitochondrial membrane 6 translocase of the outer
mitochondrial membrane 6
-0.69 0.32 -0.31
73 AT5G23670 long chain base2 long chain base2 -0.69 0.28 -0.32
74 AT3G19960 myosin 1 myosin 1 0.69 0.32 -0.34
75 AT1G26340 cytochrome B5 isoform A ARABIDOPSIS CYTOCHROME B5 ISOFORM
A, B5 #6, cytochrome B5 isoform A
-0.69 0.33 -0.31
76 AT1G68570 Major facilitator superfamily protein 0.69 0.33 -0.3
77 AT2G19760 profilin 1 PROFILIN 1, profilin 1 -0.69 0.33 -0.32
78 AT3G09300 OSBP(oxysterol binding protein)-related protein 3B OSBP(oxysterol binding
protein)-related protein 3B
-0.69 0.32 -0.31
79 AT4G24830 arginosuccinate synthase family -0.69 0.33 -0.31
80 AT2G35120 Single hybrid motif superfamily protein -0.69 0.31 -0.32
81 AT1G14210 Ribonuclease T2 family protein -0.69 0.31 -0.32
82 AT5G06740 Concanavalin A-like lectin protein kinase family protein -0.69 0.31 -0.31
83 AT1G07140 Pleckstrin homology (PH) domain superfamily protein SIRANBP -0.68 0.35 -0.3
84 AT2G22475 GRAM domain family protein GL2-EXPRESSION MODULATOR -0.68 0.31 -0.29
85 AT5G26110 Protein kinase superfamily protein -0.68 0.31 -0.33
86 AT2G19900 NADP-malic enzyme 1 Arabidopsis thaliana NADP-malic
enzyme 1, NADP-malic enzyme 1
0.68 0.28 -0.3
87 AT5G07290 MEI2-like 4 MEI2-like 4, MEI2-like 4 0.68 0.31 -0.3
88 AT1G76990 ACT domain repeat 3 ACT domain repeat 3 -0.68 0.31 -0.31
89 AT5G59160 type one serine/threonine protein phosphatase 2 PROTOPORPHYRINOGEN OXIDASE, type
one serine/threonine protein
phosphatase 2
-0.68 0.32 -0.3
90 AT1G61740 Sulfite exporter TauE/SafE family protein -0.68 0.31 -0.33
91 AT1G53530 Peptidase S24/S26A/S26B/S26C family protein -0.67 0.32 -0.31
92 AT4G17890 ARF-GAP domain 8 ARF-GAP domain 8 -0.67 0.3 -0.33
93 AT3G24190 Protein kinase superfamily protein 0.67 0.32 -0.3
94 AT2G40930 ubiquitin-specific protease 5 ATUBP5, PIGMENT DEFECTIVE EMBRYO
323, ubiquitin-specific protease 5
0.67 0.32 -0.32
95 AT1G69530 expansin A1 AT-EXP1, ATEXP1, expansin A1,
ATHEXP ALPHA 1.2, EXPANSIN 1,
expansin A1
-0.67 0.33 -0.31
96 AT3G14980 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc
finger protein
0.67 0.32 -0.33
97 AT5G08160 serine/threonine protein kinase 3 serine/threonine protein kinase 3,
serine/threonine protein kinase 3
-0.67 0.33 -0.33
98 AT5G19760 Mitochondrial substrate carrier family protein -0.67 0.32 -0.31
99 AT5G35180 Protein of unknown function (DUF1336) 0.67 0.31 -0.34
100 AT4G14760 kinase interacting (KIP1-like) family protein 0.67 0.31 -0.31
101 AT4G20780 calmodulin like 42 calmodulin like 42 -0.66 0.29 -0.31
102 AT1G11210 Protein of unknown function (DUF761) 0.66 0.33 -0.32
103 AT5G14120 Major facilitator superfamily protein -0.66 0.31 -0.33
104 AT3G09850 D111/G-patch domain-containing protein 0.66 0.32 -0.32
105 AT1G10570 Cysteine proteinases superfamily protein OVERLY TOLERANT TO SALT 2, UB-LIKE
PROTEASE 1C
0.66 0.31 -0.32
106 AT5G42970 Proteasome component (PCI) domain protein ATS4, CONSTITUTIVE
PHOTOMORPHOGENIC 14, CONSTITUTIVE
PHOTOMORPHOGENIC 8, COP9
SIGNALOSOME SUBUNIT 4, EMBRYO
DEFECTIVE 134, FUSCA 4, FUSCA 8
-0.66 0.31 -0.32
107 AT2G21290 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 63 Blast hits to 63 proteins
in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).
-0.66 0.32 -0.34
108 AT2G33845 Nucleic acid-binding, OB-fold-like protein -0.66 0.32 -0.33
109 AT3G13040 myb-like HTH transcriptional regulator family protein 0.66 0.31 -0.31
110 AT2G26240 Transmembrane proteins 14C -0.66 0.3 -0.3
111 AT2G45790 phosphomannomutase PHOSPHOMANNOMUTASE,
phosphomannomutase
-0.66 0.32 -0.3
112 AT1G67310 Calmodulin-binding transcription activator protein with
CG-1 and Ankyrin domains
0.66 0.29 -0.31
113 AT2G14900 Gibberellin-regulated family protein -0.66 0.33 -0.31
114 AT5G45310 unknown protein; LOCATED IN: endomembrane system; EXPRESSED
IN: stem, inflorescence meristem, root, leaf; EXPRESSED
DURING: LP.04 four leaves visible; Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink).
0.66 0.31 -0.32
115 AT2G03140 alpha/beta-Hydrolases superfamily protein 0.65 0.31 -0.32
116 AT2G33600 NAD(P)-binding Rossmann-fold superfamily protein -0.65 0.32 -0.32
117 AT2G44065 Ribosomal protein L2 family -0.65 0.31 -0.3
118 AT3G54670 Structural maintenance of chromosomes (SMC) family protein ATSMC1, STRUCTURAL MAINTENANCE OF
CHROMOSOMES 1, TITAN8
0.65 0.33 -0.3
119 AT2G39340 SAC3/GANP/Nin1/mts3/eIF-3 p25 family AtSAC3A, yeast Sac3 homolog A 0.65 0.3 -0.31
120 AT1G01040 dicer-like 1 ABNORMAL SUSPENSOR 1, DICER-LIKE
1, CARPEL FACTORY, dicer-like 1,
EMBRYO DEFECTIVE 60, EMBRYO
DEFECTIVE 76, SHORT INTEGUMENTS 1,
SUSPENSOR 1
0.65 0.3 -0.34
121 AT3G48140 B12D protein -0.65 0.35 -0.33
122 AT1G27630 cyclin T 1;3 cyclin T 1;3 0.65 0.33 -0.31
123 AT1G75960 AMP-dependent synthetase and ligase family protein -0.65 0.31 -0.31
124 AT4G28260 unknown protein; Has 50 Blast hits to 42 proteins in 12
species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0;
Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).
0.65 0.33 -0.31
125 AT3G13760 Cysteine/Histidine-rich C1 domain family protein -0.65 0.3 -0.32
126 AT2G43600 Chitinase family protein -0.65 0.32 -0.32
127 AT2G28660 Chloroplast-targeted copper chaperone protein -0.65 0.31 -0.31
128 AT4G37460 Tetratricopeptide repeat (TPR)-like superfamily protein SUPPRESSOR OF RPS4-RLD 1 0.65 0.3 -0.37
129 AT1G72430 SAUR-like auxin-responsive protein family -0.65 0.31 -0.32
130 AT5G18830 squamosa promoter binding protein-like 7 SQUAMOSA PROMOTER BINDING
PROTEIN-LIKE 7, squamosa promoter
binding protein-like 7
0.65 0.33 -0.3
131 AT1G65390 phloem protein 2 A5 phloem protein 2 A5, phloem
protein 2 A5
-0.64 0.32 -0.32
132 AT1G14040 EXS (ERD1/XPR1/SYG1) family protein -0.64 0.34 -0.32
133 AT5G45610 protein dimerizations SENSITIVE TO UV 2 0.64 0.31 -0.31
134 AT3G14850 TRICHOME BIREFRINGENCE-LIKE 41 TRICHOME BIREFRINGENCE-LIKE 41 -0.64 0.32 -0.29
135 AT5G51490 Plant invertase/pectin methylesterase inhibitor superfamily -0.64 0.31 -0.31
136 AT1G03150 Acyl-CoA N-acyltransferases (NAT) superfamily protein -0.64 0.34 -0.33
137 AT4G10180 light-mediated development protein 1 / deetiolated1 (DET1) ATDET1, DE-ETIOLATED 1, FUSCA 2 0.64 0.33 -0.3
138 AT4G24560 ubiquitin-specific protease 16 ubiquitin-specific protease 16 0.64 0.31 -0.32
139 AT1G77600 ARM repeat superfamily protein 0.64 0.31 -0.33
140 AT4G00585 unknown protein; Has 47 Blast hits to 47 proteins in 22
species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 7;
Plants - 33; Viruses - 0; Other Eukaryotes - 4 (source:
NCBI BLink).
-0.64 0.32 -0.34
141 AT4G24680 modifier of snc1 MODIFIER OF snc1 0.64 0.31 -0.29
142 AT1G70900 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G23110.4); Has 57 Blast hits
to 57 proteins in 14 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).
0.64 0.33 -0.34
143 AT2G21045 Rhodanese/Cell cycle control phosphatase superfamily
protein
-0.64 0.32 -0.32
144 AT2G29190 pumilio 2 pumilio 2, pumilio 2 0.64 0.29 -0.34
145 AT3G25990 Homeodomain-like superfamily protein 0.64 0.31 -0.3
146 AT3G23190 HR-like lesion-inducing protein-related -0.64 0.31 -0.32
147 AT4G30060 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein
-0.64 0.33 -0.33
148 AT4G02630 Protein kinase superfamily protein 0.64 0.32 -0.31
149 AT4G00450 RNA polymerase II transcription mediators CENTER CITY, CRYPTIC PRECOCIOUS 0.64 0.31 -0.33
150 AT1G22310 methyl-CPG-binding domain 8 ATMBD8, methyl-CPG-binding domain
8
0.64 0.29 -0.31
151 AT5G60950 COBRA-like protein 5 precursor COBRA-like protein 5 precursor -0.63 0.31 -0.31
152 AT4G11110 SPA1-related 2 SPA1-related 2 0.63 0.34 -0.33
153 AT1G16570 UDP-Glycosyltransferase superfamily protein -0.63 0.3 -0.31
154 AT3G26730 RING/U-box superfamily protein 0.63 0.31 -0.33
155 ATCG00530 CemA-like proton extrusion protein-related YCF10 0.63 0.32 -0.33
156 AT1G21160 eukaryotic translation initiation factor 2 (eIF-2) family
protein
0.63 0.32 -0.33
157 AT3G55730 myb domain protein 109 myb domain protein 109, myb domain
protein 109
-0.63 0.3 -0.31
158 AT5G56940 Ribosomal protein S16 family protein -0.63 0.31 -0.31
159 AT4G09150 T-complex protein 11 0.63 0.31 -0.3
160 AT4G32690 hemoglobin 3 ARABIDOPSIS HEMOGLOBIN 3,
hemoglobin 3
-0.63 0.3 -0.31
161 AT4G31130 Protein of unknown function (DUF1218) -0.63 0.31 -0.34
162 AT2G04650 ADP-glucose pyrophosphorylase family protein -0.63 0.32 -0.3
163 AT4G18130 phytochrome E phytochrome E 0.63 0.31 -0.32
164 AT5G14040 phosphate transporter 3;1 phosphate transporter 3;1 -0.63 0.3 -0.32
165 AT1G54890 Late embryogenesis abundant (LEA) protein-related -0.63 0.3 -0.32
166 AT3G21430 DNA binding ALWAYS EARLY 3, ARABIDOPSIS
THALIANA ALWAYS EARLY 3
0.63 0.32 -0.3
167 AT3G12370 Ribosomal protein L10 family protein -0.63 0.32 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
168 C0123 Isoleucine D,L-Isoleucine L-Isoleucine tRNA charging,
isoleucine biosynthesis I (from threonine),
jasmonoyl-amino acid conjugates biosynthesis I,
isoleucine degradation I
0.77 0.46 -0.44 C0123
169 C0266 Xylose D-Xylose D-Xylose xylose degradation I 0.72 0.45 -0.46 C0266