AT3G22320 : ATRPABC24.3
Query Information
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AGICode AT3G22320
Description Eukaryotic rpb5 RNA polymerase subunit family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G22320 Eukaryotic rpb5 RNA polymerase subunit family protein ATRPABC24.3, NRPB5, NRPD5, RNA
POLYMERASE II FIFTH LARGEST
SUBUNIT, A		 1 0.3 -0.32
2 AT1G10590 Nucleic acid-binding, OB-fold-like protein 0.83 0.31 -0.3
3 AT4G02230 Ribosomal protein L19e family protein 0.82 0.32 -0.34
4 AT3G01790 Ribosomal protein L13 family protein 0.82 0.36 -0.3
5 AT4G24440 transcription initiation factor IIA gamma chain /
TFIIA-gamma (TFIIA-S)		 0.81 0.31 -0.3
6 AT1G79390 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.81 0.31 -0.3
7 AT2G32220 Ribosomal L27e protein family 0.81 0.32 -0.3
8 AT5G57280 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 root initiation defective 2 0.8 0.32 -0.31
9 AT5G58660 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 0.79 0.31 -0.31
10 AT3G06790 plastid developmental protein DAG, putative 0.78 0.31 -0.31
11 AT4G02220 zinc finger (MYND type) family protein / programmed cell
death 2 C-terminal domain-containing protein		 0.78 0.3 -0.3
12 AT3G14230 related to AP2 2 related to AP2 2 0.78 0.3 -0.34
13 AT3G46560 Tim10/DDP family zinc finger protein embryo defective 2474, TIM9 0.78 0.31 -0.34
14 AT2G19540 Transducin family protein / WD-40 repeat family protein 0.77 0.31 -0.33
15 AT5G05450 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.76 0.31 -0.32
16 AT2G43640 Signal recognition particle, SRP9/SRP14 subunit 0.76 0.3 -0.32
17 AT1G15250 Zinc-binding ribosomal protein family protein 0.76 0.32 -0.32
18 AT4G12470 azelaic acid induced 1 azelaic acid induced 1 0.76 0.32 -0.32
19 AT3G21140 Pyridoxamine 5'-phosphate oxidase family protein 0.76 0.32 -0.31
20 AT1G79550 phosphoglycerate kinase phosphoglycerate kinase 0.75 0.34 -0.31
21 AT5G03740 histone deacetylase 2C histone deacetylase 2C, HISTONE
DEACETYLASE 3		 0.75 0.31 -0.34
22 AT2G17360 Ribosomal protein S4 (RPS4A) family protein 0.75 0.32 -0.28
23 AT2G44270 repressor of lrx1 repressor of lrx1 0.75 0.3 -0.33
24 AT2G34520 mitochondrial ribosomal protein S14 mitochondrial ribosomal protein
S14		 0.75 0.33 -0.33
25 AT2G27330 RNA-binding (RRM/RBD/RNP motifs) family protein 0.75 0.31 -0.32
26 AT4G39920 C-CAP/cofactor C-like domain-containing protein PORCINO, TUBULIN-FOLDING COFACTOR
C		 0.75 0.3 -0.31
27 AT4G31180 Class II aminoacyl-tRNA and biotin synthetases superfamily
protein		 0.74 0.31 -0.31
28 AT3G02220 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF2039 (InterPro:IPR019351); Has 215
Blast hits to 215 proteins in 94 species: Archae - 2;
Bacteria - 2; Metazoa - 125; Fungi - 4; Plants - 38;
Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).		 0.74 0.3 -0.31
29 AT2G47420 Ribosomal RNA adenine dimethylase family protein adenosine dimethyl transferase 1A 0.74 0.31 -0.3
30 AT4G01100 adenine nucleotide transporter 1 adenine nucleotide transporter 1 0.74 0.33 -0.31
31 AT4G12480 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 EARLY ARABIDOPSIS ALUMINUM INDUCED
1, pEARLI 1		 0.74 0.32 -0.34
32 AT5G61780 TUDOR-SN protein 2 Arabidopsis thaliana TUDOR-SN
protein 2, TUDOR-SN protein 2,
TUDOR-SN protein 2		 0.74 0.3 -0.33
33 AT1G60770 Tetratricopeptide repeat (TPR)-like superfamily protein 0.74 0.3 -0.3
34 AT2G04520 Nucleic acid-binding, OB-fold-like protein 0.74 0.33 -0.31
35 AT1G24530 Transducin/WD40 repeat-like superfamily protein 0.74 0.32 -0.31
36 AT4G15850 RNA helicase 1 RNA helicase 1, RNA helicase 1 0.73 0.32 -0.33
37 AT4G13940 S-adenosyl-L-homocysteine hydrolase S-ADENOSYL-L-HOMOCYSTEIN HYDROLASE
1, EMBRYO DEFECTIVE 1395,
HOMOLOGY-DEPENDENT GENE SILENCING
1, MATERNAL EFFECT EMBRYO ARREST
58, S-ADENOSYL-L-HOMOCYSTEIN
HYDROLASE 1		 0.73 0.3 -0.3
38 AT1G64350 Transducin/WD40 repeat-like superfamily protein SEH1H 0.73 0.31 -0.32
39 AT2G17670 Tetratricopeptide repeat (TPR)-like superfamily protein 0.73 0.3 -0.31
40 AT1G27435 unknown protein; Has 16 Blast hits to 16 proteins in 8
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.73 0.31 -0.31
41 AT1G14210 Ribonuclease T2 family protein 0.73 0.31 -0.34
42 AT2G40240 Tetratricopeptide repeat (TPR)-like superfamily protein 0.72 0.34 -0.31
43 AT3G02710 ARM repeat superfamily protein 0.72 0.32 -0.31
44 AT5G16060 Cytochrome c oxidase biogenesis protein Cmc1-like 0.72 0.31 -0.32
45 AT5G49210 unknown protein; Has 3675 Blast hits to 2315 proteins in
312 species: Archae - 2; Bacteria - 342; Metazoa - 1190;
Fungi - 281; Plants - 114; Viruses - 4; Other Eukaryotes -
1742 (source: NCBI BLink).		 0.72 0.32 -0.34
46 AT5G12190 RNA-binding (RRM/RBD/RNP motifs) family protein 0.72 0.32 -0.33
47 AT3G04230 Ribosomal protein S5 domain 2-like superfamily protein 0.71 0.32 -0.32
48 AT3G63090 Ubiquitin carboxyl-terminal hydrolase family protein 0.71 0.32 -0.32
49 AT5G01770 HEAT repeat ;WD domain, G-beta repeat protein protein ATRAPTOR1A, RAPTOR1A, RAPTOR2 -0.71 0.32 -0.32
50 AT4G02630 Protein kinase superfamily protein -0.71 0.3 -0.32
51 AT5G63200 tetratricopeptide repeat (TPR)-containing protein -0.69 0.32 -0.3
52 AT3G50220 Protein of unknown function (DUF579) IRREGULAR XYLEM 15 -0.67 0.3 -0.35
53 AT3G22425 imidazoleglycerol-phosphate dehydratase HISN5A,
imidazoleglycerol-phosphate
dehydratase		 -0.67 0.29 -0.3
54 AT3G10940 dual specificity protein phosphatase (DsPTP1) family
protein		 LIKE SEX4 2 -0.66 0.3 -0.31
55 AT3G56050 Protein kinase family protein -0.66 0.31 -0.33
56 AT1G71480 Nuclear transport factor 2 (NTF2) family protein -0.66 0.29 -0.31
57 AT3G45680 Major facilitator superfamily protein -0.66 0.31 -0.29
58 AT1G18870 isochorismate synthase 2 ARABIDOPSIS ISOCHORISMATE SYNTHASE
2, isochorismate synthase 2		 -0.65 0.31 -0.33
59 AT1G19835 Plant protein of unknown function (DUF869) -0.65 0.31 -0.33
60 AT5G44030 cellulose synthase A4 cellulose synthase A4, IRREGULAR
XYLEM 5, NWS2		 -0.64 0.29 -0.33
61 AT5G17420 Cellulose synthase family protein ATCESA7, CELLULOSE SYNTHASE
CATALYTIC SUBUNIT 7, IRREGULAR
XYLEM 3, MURUS 10		 -0.63 0.33 -0.29
62 AT5G62130 Per1-like family protein -0.63 0.34 -0.34
63 AT5G07890 myosin heavy chain-related -0.63 0.3 -0.29
64 AT1G10640 Pectin lyase-like superfamily protein -0.62 0.31 -0.31
65 AT2G20340 Pyridoxal phosphate (PLP)-dependent transferases
superfamily protein		 -0.62 0.31 -0.3
66 AT1G67870 glycine-rich protein -0.61 0.32 -0.32
67 AT4G31820 Phototropic-responsive NPH3 family protein ENHANCER OF PINOID, MACCHI-BOU 4,
NAKED PINS IN YUC MUTANTS 1		 -0.61 0.31 -0.32
68 AT5G54690 galacturonosyltransferase 12 galacturonosyltransferase 12,
IRREGULAR XYLEM 8, LGT6		 -0.61 0.33 -0.31
69 AT5G51290 Diacylglycerol kinase family protein -0.61 0.33 -0.33
70 AT3G24760 Galactose oxidase/kelch repeat superfamily protein -0.61 0.3 -0.32
71 AT1G68710 ATPase E1-E2 type family protein / haloacid
dehalogenase-like hydrolase family protein		 -0.6 0.33 -0.32
72 AT4G32270 Ubiquitin-like superfamily protein -0.6 0.32 -0.31
73 AT1G17790 DNA-binding bromodomain-containing protein -0.6 0.31 -0.32
74 AT3G20420 RNAse THREE-like protein 2 RNASEIII-LIKE 2, RNAse THREE-like
protein 2		 -0.6 0.31 -0.32
75 AT5G39910 Pectin lyase-like superfamily protein -0.59 0.33 -0.3
76 AT2G37900 Major facilitator superfamily protein -0.59 0.31 -0.31
77 AT5G37180 sucrose synthase 5 ARABIDOPSIS THALIANA SUCROSE
SYNTHASE 5, sucrose synthase 5		 -0.58 0.34 -0.31
78 AT4G01210 glycosyl transferase family 1 protein -0.58 0.32 -0.32
79 AT1G75310 auxin-like 1 protein auxilin-like 1 -0.58 0.32 -0.32
80 AT2G15530 RING/U-box superfamily protein -0.58 0.31 -0.32
81 AT4G24250 Seven transmembrane MLO family protein MILDEW RESISTANCE LOCUS O 13,
MILDEW RESISTANCE LOCUS O 13		 -0.57 0.31 -0.32
82 AT2G19780 Leucine-rich repeat (LRR) family protein -0.57 0.31 -0.31
83 AT4G35290 glutamate receptor 2 ATGLR3.2, ATGLUR2, GLUTAMATE
RECEPTOR 3.2, glutamate receptor 2		 -0.57 0.35 -0.33
84 AT3G10080 RmlC-like cupins superfamily protein -0.57 0.32 -0.3
85 AT2G39850 Subtilisin-like serine endopeptidase family protein -0.56 0.32 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
86 C0266 Xylose D-Xylose D-Xylose xylose degradation I -0.78 0.45 -0.42 C0266
87 C0210 Phytol E-Phytol Phytol chlorophyll a degradation II,
chlorophyll a degradation,
phytol salvage pathway 		-0.74 0.44 -0.44 C0210
88 C0092 Fumaric acid - Fumarate citrulline-nitric oxide cycle,
succinate + a ubiquinone -> a ubiquinol + fumarate,
superpathway of glyoxylate cycle and fatty acid degradation,
tyrosine degradation I,
aerobic respiration (alternative oxidase pathway),
inosine-5'-phosphate biosynthesis II,
arginine biosynthesis I,
TCA cycle variation V (plant),
TCA cycle variation III (eukaryotic),
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
purine nucleotides de novo biosynthesis II,
arginine biosynthesis II (acetyl cycle),
urea cycle,
aerobic respiration (cytochrome c) 		-0.63 0.3 -0.32 C0092
89 C0142 Malonic acid - Malonate fatty acid biosynthesis (plant mitochondria) -0.61 0.31 -0.32 C0142