AT3G06040 : -
Query Information
Cytoscape Web will replace the contents of this div with your graph.
AGICode AT3G06040
Description Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein
Gene information
Help   
  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G06040 Ribosomal protein L12/ ATP-dependent Clp protease adaptor
protein ClpS family protein		 1 0.3 -0.29
2 AT3G05810 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: mitochondrion;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: IGR protein
motif (InterPro:IPR019083); BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G26800.1); Has
62 Blast hits to 62 proteins in 14 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.78 0.32 -0.34
3 AT5G61970 signal recognition particle-related / SRP-related 0.78 0.3 -0.33
4 AT2G32800 protein kinase family protein AP4.3A -0.75 0.33 -0.31
5 AT3G05260 NAD(P)-binding Rossmann-fold superfamily protein -0.75 0.32 -0.31
6 AT5G05520 Outer membrane OMP85 family protein 0.74 0.32 -0.31
7 AT5G40040 60S acidic ribosomal protein family 0.74 0.31 -0.32
8 AT5G59850 Ribosomal protein S8 family protein 0.74 0.31 -0.34
9 AT2G16460 Protein of unknown function (DUF1640) 0.73 0.28 -0.32
10 AT2G15000 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G34265.2); Has 70 Blast
hits to 70 proteins in 9 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.73 0.32 -0.3
11 AT1G49540 elongator protein 2 Elongator subunit 2, elongator
protein 2		 0.72 0.3 -0.3
12 AT3G18510 unknown protein; Has 15 Blast hits to 15 proteins in 9
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.72 0.3 -0.31
13 AT3G15780 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G52550.1); Has 20 Blast hits
to 20 proteins in 5 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.72 0.31 -0.31
14 AT1G61660 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 -0.72 0.33 -0.36
15 AT1G22890 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 19 plant structures;
EXPRESSED DURING: 11 growth stages; Has 17 Blast hits to 17
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.71 0.31 -0.31
16 AT1G70160 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT4G27020.1); Has 108 Blast hits to 108 proteins in
20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 89; Viruses - 0; Other Eukaryotes - 19 (source:
NCBI BLink).		 -0.71 0.3 -0.31
17 AT3G14067 Subtilase family protein -0.71 0.32 -0.33
18 AT1G70420 Protein of unknown function (DUF1645) -0.71 0.31 -0.31
19 AT3G44330 INVOLVED IN: protein processing; LOCATED IN: mitochondrion,
endoplasmic reticulum, plasma membrane, vacuole; EXPRESSED
IN: 25 plant structures; EXPRESSED DURING: 13 growth
stages; CONTAINS InterPro DOMAIN/s: Nicalin
(InterPro:IPR016574), EF-Hand 1, calcium-binding site
(InterPro:IPR018247), Nicastrin (InterPro:IPR008710); Has
245 Blast hits to 243 proteins in 99 species: Archae - 6;
Bacteria - 10; Metazoa - 139; Fungi - 0; Plants - 46;
Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).		 0.71 0.32 -0.31
20 AT2G25870 haloacid dehalogenase-like hydrolase family protein 0.71 0.33 -0.31
21 AT1G72750 translocase inner membrane subunit 23-2 translocase inner membrane subunit
23-2, translocase inner membrane
subunit 23-2		 0.71 0.3 -0.3
22 AT5G08305 Pentatricopeptide repeat (PPR) superfamily protein 0.71 0.34 -0.3
23 AT5G24830 Tetratricopeptide repeat (TPR)-like superfamily protein 0.7 0.3 -0.31
24 AT1G09660 RNA-binding KH domain-containing protein 0.69 0.32 -0.31
25 AT3G03870 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G18130.1); Has 41 Blast hits
to 41 proteins in 11 species: Archae - 0; Bacteria - 0;
Metazoa - 2; Fungi - 0; Plants - 39; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.69 0.32 -0.31
26 AT1G69210 Uncharacterised protein family UPF0090 0.69 0.3 -0.3
27 AT1G52360 Coatomer, beta' subunit 0.69 0.32 -0.32
28 AT5G06210 RNA binding (RRM/RBD/RNP motifs) family protein 0.69 0.32 -0.28
29 AT1G78450 SOUL heme-binding family protein 0.68 0.31 -0.32
30 AT2G34300 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.68 0.31 -0.32
31 AT5G35700 fimbrin-like protein 2 fimbrin-like protein 2, FIMBRIN5 0.68 0.31 -0.32
32 AT1G23280 MAK16 protein-related 0.68 0.34 -0.29
33 AT1G17690 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: nucleus; EXPRESSED
IN: 24 plant structures; EXPRESSED DURING: 13 growth
stages; CONTAINS InterPro DOMAIN/s: Digestive organ
expansion factor, predicted (InterPro:IPR010678); Has 25006
Blast hits to 13379 proteins in 904 species: Archae - 102;
Bacteria - 5571; Metazoa - 7448; Fungi - 3168; Plants -
1056; Viruses - 466; Other Eukaryotes - 7195 (source: NCBI
BLink).		 nucleolar factor 1 0.68 0.29 -0.32
34 AT5G57490 voltage dependent anion channel 4 ARABIDOPSIS THALIANA VOLTAGE
DEPENDENT ANION CHANNEL 4, voltage
dependent anion channel 4		 0.68 0.29 -0.35
35 AT1G18070 Translation elongation factor EF1A/initiation factor
IF2gamma family protein		 0.68 0.32 -0.33
36 AT5G47540 Mo25 family protein 0.68 0.31 -0.31
37 AT5G44310 Late embryogenesis abundant protein (LEA) family protein -0.68 0.33 -0.28
38 AT5G51890 Peroxidase superfamily protein -0.67 0.33 -0.32
39 AT3G12600 nudix hydrolase homolog 16 nudix hydrolase homolog 16, nudix
hydrolase homolog 16		 0.67 0.33 -0.3
40 AT1G62280 SLAC1 homologue 1 SLAC1 homologue 1 0.67 0.32 -0.31
41 AT5G60720 Protein of unknown function, DUF547 -0.67 0.31 -0.3
42 AT2G37510 RNA-binding (RRM/RBD/RNP motifs) family protein 0.67 0.31 -0.31
43 AT1G20410 Pseudouridine synthase family protein 0.67 0.3 -0.31
44 AT3G27740 carbamoyl phosphate synthetase A carbamoyl phosphate synthetase A,
VENOSA 6		 0.67 0.32 -0.32
45 AT3G02480 Late embryogenesis abundant protein (LEA) family protein -0.66 0.32 -0.29
46 AT4G33810 Glycosyl hydrolase superfamily protein -0.66 0.31 -0.3
47 AT5G15610 Proteasome component (PCI) domain protein 0.66 0.31 -0.3
48 AT5G04310 Pectin lyase-like superfamily protein 0.66 0.28 -0.3
49 AT4G24840 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
protein transport, Golgi organization; LOCATED IN: vacuole;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: COG complex
component, COG2 (InterPro:IPR009316); Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink).		 0.66 0.33 -0.33
50 AT2G31740 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.66 0.31 -0.3
51 AT5G60870 Regulator of chromosome condensation (RCC1) family protein RCC1/UVR8/GEF-like 3 0.66 0.3 -0.29
52 AT3G59630 diphthamide synthesis DPH2 family protein 0.66 0.31 -0.32
53 AT3G48570 secE/sec61-gamma protein transport protein 0.66 0.3 -0.32
54 AT3G13130 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: male gametophyte; Has
140 Blast hits to 132 proteins in 41 species: Archae - 2;
Bacteria - 4; Metazoa - 29; Fungi - 20; Plants - 51;
Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).		 -0.66 0.32 -0.31
55 AT5G27680 RECQ helicase SIM RECQ helicase SIM 0.66 0.31 -0.31
56 AT3G04600 Nucleotidylyl transferase superfamily protein 0.66 0.33 -0.31
57 AT5G02350 Cysteine/Histidine-rich C1 domain family protein 0.65 0.3 -0.3
58 AT1G53940 GDSL-motif lipase 2 GDSL-motif lipase 2 0.65 0.32 -0.32
59 AT4G33550 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.65 0.33 -0.31
60 AT3G02280 Flavodoxin family protein 0.65 0.3 -0.28
61 AT5G53070 Ribosomal protein L9/RNase H1 0.65 0.31 -0.32
62 AT1G50740 Transmembrane proteins 14C -0.65 0.31 -0.32
63 AT4G21140 BEST Arabidopsis thaliana protein match is: copper ion
binding (TAIR:AT4G05400.2); Has 41 Blast hits to 41
proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes -
1 (source: NCBI BLink).		 0.65 0.33 -0.34
64 AT1G34160 Tetratricopeptide repeat (TPR)-like superfamily protein 0.65 0.31 -0.33
65 AT4G22740 glycine-rich protein -0.65 0.31 -0.31
66 AT3G12250 TGACG motif-binding factor 6 BZIP45, TGACG motif-binding factor
6		 -0.65 0.31 -0.3
67 AT2G16990 Major facilitator superfamily protein -0.64 0.31 -0.33
68 AT1G12680 phosphoenolpyruvate carboxylase-related kinase 2 phosphoenolpyruvate
carboxylase-related kinase 2		 -0.64 0.31 -0.32
69 AT1G28070 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G33510.1); Has 85 Blast hits
to 77 proteins in 15 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.63 0.3 -0.34
70 AT4G37220 Cold acclimation protein WCOR413 family -0.62 0.31 -0.3
71 AT1G72760 Protein kinase superfamily protein -0.62 0.31 -0.33
72 AT1G75900 GDSL-like Lipase/Acylhydrolase superfamily protein -0.62 0.34 -0.31
73 AT1G62710 beta vacuolar processing enzyme beta vacuolar processing enzyme,
BETAVPE		 -0.62 0.31 -0.31
74 AT2G32510 mitogen-activated protein kinase kinase kinase 17 mitogen-activated protein kinase
kinase kinase 17		 -0.62 0.31 -0.31
75 AT1G63420 Arabidopsis thaliana protein of unknown function (DUF821) -0.61 0.31 -0.31
76 AT4G02590 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 unfertilized embryo sac 12 -0.61 0.31 -0.3
77 AT5G42200 RING/U-box superfamily protein -0.61 0.31 -0.32
78 AT2G21510 DNAJ heat shock N-terminal domain-containing protein -0.6 0.32 -0.32
79 AT5G19875 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: response to oxidative stress; LOCATED IN:
endomembrane system; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G31940.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 -0.6 0.32 -0.32
80 AT3G13140 hydroxyproline-rich glycoprotein family protein -0.6 0.32 -0.3
81 AT5G65500 U-box domain-containing protein kinase family protein -0.59 0.31 -0.32
82 AT1G67530 ARM repeat superfamily protein -0.59 0.32 -0.3
83 AT2G28940 Protein kinase superfamily protein -0.59 0.33 -0.33
84 AT3G21520 DUF679 domain membrane protein 1 Arabidopsis thaliana DUF679 domain
membrane protein 1, DUF679 domain
membrane protein 1		 -0.59 0.31 -0.33
Metabolite information
Help   
  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
85 C0146 Mannitol D-Mannitol Mannitol mannitol degradation II -0.65 0.49 -0.45 C0146