AT3G02660 : EMBRYO DEFECTIVE 2768
Query Information
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AGICode AT3G02660
Description Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G02660 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial EMBRYO DEFECTIVE 2768 1 0.32 -0.28
2 AT3G52150 RNA-binding (RRM/RBD/RNP motifs) family protein 0.91 0.32 -0.3
3 AT3G54210 Ribosomal protein L17 family protein 0.9 0.31 -0.3
4 AT2G33450 Ribosomal L28 family 0.88 0.31 -0.33
5 AT5G13510 Ribosomal protein L10 family protein EMBRYO DEFECTIVE 3136 0.88 0.32 -0.3
6 AT2G24090 Ribosomal protein L35 0.88 0.34 -0.3
7 AT5G07020 proline-rich family protein 0.87 0.33 -0.3
8 AT1G75350 Ribosomal protein L31 embryo defective 2184 0.87 0.33 -0.29
9 AT4G01310 Ribosomal L5P family protein 0.86 0.32 -0.3
10 AT1G29070 Ribosomal protein L34 0.86 0.31 -0.31
11 AT3G46100 Histidyl-tRNA synthetase 1 Histidyl-tRNA synthetase 1,
Histidyl-tRNA synthetase 1		 0.85 0.31 -0.33
12 AT5G50250 chloroplast RNA-binding protein 31B chloroplast RNA-binding protein
31B		 0.85 0.33 -0.33
13 AT5G16390 chloroplastic acetylcoenzyme A carboxylase 1 BIOTIN CARBOXYL CARRIER PROTEIN,
BIOTIN CARBOXYL-CARRIER PROTEIN 1,
BIOTIN CARBOXYL-CARRIER PROTEIN 1,
chloroplastic acetylcoenzyme A
carboxylase 1, CAC1-A, CAC1A		 0.85 0.31 -0.32
14 AT5G66530 Galactose mutarotase-like superfamily protein 0.85 0.32 -0.32
15 AT4G13220 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 27 Blast hits to 27 proteins
in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.85 0.3 -0.33
16 AT3G46630 Protein of unknown function (DUF3223) 0.85 0.32 -0.33
17 AT1G02910 tetratricopeptide repeat (TPR)-containing protein LOW PSII ACCUMULATION1 0.84 0.31 -0.3
18 AT3G60210 GroES-like family protein 0.84 0.3 -0.31
19 AT3G63490 Ribosomal protein L1p/L10e family EMBRYO DEFECTIVE 3126 0.84 0.32 -0.32
20 AT3G18390 CRS1 / YhbY (CRM) domain-containing protein embryo defective 1865 0.83 0.32 -0.32
21 AT1G43560 thioredoxin Y2 thioredoxin Y2, thioredoxin Y2 0.83 0.31 -0.32
22 AT5G28750 Bacterial sec-independent translocation protein mttA/Hcf106 0.83 0.33 -0.32
23 AT3G52960 Thioredoxin superfamily protein 0.83 0.3 -0.31
24 AT2G26550 heme oxygenase 2 heme oxygenase 2 0.83 0.3 -0.31
25 AT2G44920 Tetratricopeptide repeat (TPR)-like superfamily protein 0.83 0.32 -0.31
26 AT5G42765 INVOLVED IN: biological_process unknown; LOCATED IN:
thylakoid, chloroplast thylakoid membrane, chloroplast;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: Twin-arginine
translocation pathway, signal sequence
(InterPro:IPR006311); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 0.82 0.33 -0.35
27 AT4G38225 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED
DURING: 13 growth stages; Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 0.82 0.35 -0.34
28 AT5G63310 nucleoside diphosphate kinase 2 ARABIDOPSIS NUCLEOSIDE DIPHOSPHATE
KINASE 2, NUCLEOSIDE DIPHOSPHATE
KINASE IA, NDPK IA IA, NDP KINASE
1A, nucleoside diphosphate kinase
2		 0.82 0.31 -0.33
29 AT4G35250 NAD(P)-binding Rossmann-fold superfamily protein 0.82 0.28 -0.31
30 AT3G15690 Single hybrid motif superfamily protein 0.82 0.32 -0.33
31 AT3G27160 Ribosomal protein S21 family protein GLUCOSE HYPERSENSITIVE 1 0.82 0.31 -0.31
32 AT4G18360 Aldolase-type TIM barrel family protein -0.82 0.33 -0.3
33 AT1G74970 ribosomal protein S9 ribosomal protein S9, TWN3 0.82 0.31 -0.33
34 AT1G31160 HISTIDINE TRIAD NUCLEOTIDE-BINDING 2 HISTIDINE TRIAD NUCLEOTIDE-BINDING
2		 0.82 0.3 -0.32
35 AT5G47110 Chlorophyll A-B binding family protein LIL3:2 0.81 0.3 -0.34
36 AT1G11850 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 19 plant structures;
EXPRESSED DURING: 12 growth stages; Has 38777 Blast hits to
8185 proteins in 741 species: Archae - 46; Bacteria -
14846; Metazoa - 13013; Fungi - 1392; Plants - 5894;
Viruses - 543; Other Eukaryotes - 3043 (source: NCBI
BLink).		 0.81 0.32 -0.3
37 AT3G12080 GTP-binding family protein embryo defective 2738 0.81 0.31 -0.3
38 AT3G47450 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 ATNOA1, ATNOS1, NO ASSOCIATED 1,
NITRIC OXIDE SYNTHASE 1, RESISTANT
TO INHIBITION WITH FOSMIDOMYCIN 1		 0.81 0.33 -0.29
39 AT1G34000 one-helix protein 2 one-helix protein 2 0.81 0.33 -0.31
40 AT2G45770 signal recognition particle receptor protein, chloroplast
(FTSY)		 CPFTSY, FERRIC CHELATE REDUCTASE
DEFECTIVE 4		 0.81 0.32 -0.31
41 AT1G63130 Tetratricopeptide repeat (TPR)-like superfamily protein 0.81 0.31 -0.32
42 AT3G25290 Auxin-responsive family protein -0.81 0.33 -0.3
43 AT1G76790 O-methyltransferase family protein indole glucosinolate
O-methyltransferase 5		 -0.79 0.31 -0.3
44 AT5G24290 Vacuolar iron transporter (VIT) family protein -0.79 0.32 -0.3
45 AT1G69526 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.77 0.31 -0.33
46 AT4G22610 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.76 0.28 -0.33
47 AT1G26730 EXS (ERD1/XPR1/SYG1) family protein -0.74 0.34 -0.31
48 AT5G59490 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 -0.74 0.33 -0.3
49 AT3G26690 nudix hydrolase homolog 13 ARABIDOPSIS THALIANA NUDIX
HYDROLASE HOMOLOG 13, nudix
hydrolase homolog 13, nudix
hydrolase homolog 13		 -0.73 0.33 -0.32
50 AT2G47130 NAD(P)-binding Rossmann-fold superfamily protein AtSDR3, short-chain
dehydrogenase/reductase 2		 -0.73 0.31 -0.32
51 AT2G39310 jacalin-related lectin 22 jacalin-related lectin 22 -0.72 0.3 -0.3
52 AT4G29690 Alkaline-phosphatase-like family protein -0.72 0.3 -0.31
53 AT3G21240 4-coumarate:CoA ligase 2 4-coumarate:CoA ligase 2, AT4CL2 -0.72 0.32 -0.31
54 AT1G30270 CBL-interacting protein kinase 23 ATCIPK23, CBL-interacting protein
kinase 23, LOW-K+-SENSITIVE 1,
SOS2-like protein kinase 17,
SNF1-RELATED PROTEIN KINASE 3.23		 -0.72 0.31 -0.3
55 AT3G61990 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 O-MTase family 3 protein -0.72 0.31 -0.31
56 AT3G50280 HXXXD-type acyl-transferase family protein -0.72 0.33 -0.29
57 AT1G80830 natural resistance-associated macrophage protein 1 ATNRAMP1, natural
resistance-associated macrophage
protein 1, PMIT1		 -0.71 0.31 -0.31
58 AT4G29210 gamma-glutamyl transpeptidase 4 gamma-glutamyl transpeptidase 3,
gamma-glutamyl transpeptidase 4		 -0.71 0.31 -0.32
59 AT1G70300 K+ uptake permease 6 K+ uptake permease 6 -0.71 0.32 -0.31
60 AT2G22330 cytochrome P450, family 79, subfamily B, polypeptide 3 cytochrome P450, family 79,
subfamily B, polypeptide 3		 -0.7 0.3 -0.33
61 AT2G02970 GDA1/CD39 nucleoside phosphatase family protein -0.69 0.3 -0.3
62 AT3G54950 patatin-like protein 6 patatin-like protein 6,
PATATIN-LIKE PROTEIN 7,
patatin-related phospholipase
IIIbeta		 -0.69 0.31 -0.3
63 AT1G55850 cellulose synthase like E1 ATCSLE1, cellulose synthase like
E1		 -0.68 0.34 -0.32
64 AT1G10050 glycosyl hydrolase family 10 protein / carbohydrate-binding
domain-containing protein		 -0.68 0.31 -0.33
65 AT3G13110 serine acetyltransferase 2;2 serine acetyltransferase 2;2,
SERINE ACETYLTRANSFERASE-1, SERINE
ACETYLTRANSFERASE A, SERINE
ACETYLTRANSFERASE-MITOCHONDRIAL,
SERINE ACETYLTRANSFERASE 3, serine
acetyltransferase 2;2		 -0.67 0.32 -0.3
66 AT4G23700 cation/H+ exchanger 17 cation/H+ exchanger 17, cation/H+
exchanger 17		 -0.67 0.33 -0.32
67 AT1G14120 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.67 0.32 -0.31
68 AT2G27310 F-box family protein -0.67 0.29 -0.31
69 AT4G29900 autoinhibited Ca(2+)-ATPase 10 autoinhibited Ca(2+)-ATPase 10,
ATACA10, COMPACT INFLORESCENCE 1		 -0.67 0.32 -0.33
70 AT3G25780 allene oxide cyclase 3 allene oxide cyclase 3 -0.67 0.31 -0.32
71 AT3G03520 non-specific phospholipase C3 non-specific phospholipase C3 -0.67 0.31 -0.31
72 AT2G35980 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 ARABIDOPSIS NDR1/HIN1-LIKE 10,
NDR1/HIN1-LIKE,
YELLOW-LEAF-SPECIFIC GENE 9		 -0.66 0.32 -0.33
73 AT1G30760 FAD-binding Berberine family protein -0.66 0.31 -0.34
74 AT1G54990 alpha/beta-Hydrolases superfamily protein AUXIN RESISTANT 4, REDUCED ROOT
GRAVITROPISM, REDUCED ROOT
GRAVITROPISM 1		 -0.66 0.33 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
75 C0051 Aconitic acid cis-Aconitic acid cis-Aconitate glutamine biosynthesis III,
TCA cycle variation V (plant),
glyoxylate cycle,
TCA cycle variation III (eukaryotic) 		-0.79 0.43 -0.43 C0051