AT3G02490 : -
Query Information
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AGICode AT3G02490
Description Pentatricopeptide repeat (PPR) superfamily protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G02490 Pentatricopeptide repeat (PPR) superfamily protein 1 0.3 -0.32
2 AT4G04940 transducin family protein / WD-40 repeat family protein 0.82 0.29 -0.31
3 AT5G43850 RmlC-like cupins superfamily protein ARD4, ATARD4 -0.81 0.32 -0.3
4 AT2G47990 transducin family protein / WD-40 repeat family protein EMBRYO SAC DEVELOPMENT ARREST 13,
EMBRYO SAC DEVELOPMENT ARREST 19,
SLOW WALKER1		 0.8 0.34 -0.32
5 AT4G29890 choline monooxygenase, putative (CMO-like) -0.79 0.32 -0.3
6 AT4G25730 FtsJ-like methyltransferase family protein 0.79 0.31 -0.3
7 AT2G18220 Noc2p family 0.79 0.29 -0.32
8 AT3G58660 Ribosomal protein L1p/L10e family 0.79 0.34 -0.33
9 AT1G58180 beta carbonic anhydrase 6 A. THALIANA BETA CARBONIC
ANHYDRASE 6, beta carbonic
anhydrase 6		 -0.79 0.32 -0.32
10 AT1G69070 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: cellular_component
unknown; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Nop14-like protein (InterPro:IPR007276); Has 69842 Blast
hits to 35213 proteins in 1572 species: Archae - 363;
Bacteria - 20593; Metazoa - 20851; Fungi - 8010; Plants -
2912; Viruses - 517; Other Eukaryotes - 16596 (source: NCBI
BLink).		 0.78 0.31 -0.31
11 AT3G61240 DEA(D/H)-box RNA helicase family protein 0.78 0.31 -0.3
12 AT5G09840 Putative endonuclease or glycosyl hydrolase 0.78 0.32 -0.32
13 AT1G77030 hydrolases, acting on acid anhydrides, in
phosphorus-containing anhydrides;ATP-dependent
helicases;nucleic acid binding;ATP binding;RNA
binding;helicases		 0.78 0.32 -0.31
14 AT2G18520 Tetratricopeptide repeat (TPR)-like superfamily protein 0.78 0.31 -0.31
15 AT4G23540 ARM repeat superfamily protein 0.78 0.3 -0.32
16 AT5G14520 pescadillo-related 0.78 0.33 -0.32
17 AT3G02300 Regulator of chromosome condensation (RCC1) family protein -0.77 0.33 -0.33
18 AT4G16520 Ubiquitin-like superfamily protein autophagy 8f -0.77 0.31 -0.29
19 AT3G57660 nuclear RNA polymerase A1 nuclear RNA polymerase A1 0.77 0.31 -0.31
20 AT1G30500 nuclear factor Y, subunit A7 nuclear factor Y, subunit A7 -0.77 0.32 -0.32
21 AT2G27775 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match is:
Tetratricopeptide repeat (TPR)-like superfamily protein
(TAIR:AT2G27800.1); Has 21 Blast hits to 21 proteins in 5
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.77 0.32 -0.31
22 AT4G27640 ARM repeat superfamily protein 0.76 0.31 -0.31
23 AT5G46920 Intron maturase, type II family protein 0.76 0.31 -0.3
24 AT1G55890 Tetratricopeptide repeat (TPR)-like superfamily protein 0.76 0.3 -0.29
25 AT4G31120 SHK1 binding protein 1 ATPRMT5, PROTEIN ARGININE
METHYLTRANSFERASE 5, SHK1 binding
protein 1		 0.76 0.33 -0.31
26 AT5G10010 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
nucleolus; EXPRESSED IN: 25 plant structures; EXPRESSED
DURING: 15 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G64910.1); Has 33260
Blast hits to 16857 proteins in 1270 species: Archae - 88;
Bacteria - 3040; Metazoa - 11915; Fungi - 3137; Plants -
1371; Viruses - 424; Other Eukaryotes - 13285 (source: NCBI
BLink).		 0.76 0.34 -0.31
27 AT3G11830 TCP-1/cpn60 chaperonin family protein 0.76 0.3 -0.31
28 AT1G19520 pentatricopeptide (PPR) repeat-containing protein NUCLEAR FUSION DEFECTIVE 5 0.75 0.3 -0.32
29 AT3G52030 F-box family protein with WD40/YVTN repeat doamin -0.75 0.34 -0.33
30 AT5G16930 AAA-type ATPase family protein 0.75 0.32 -0.3
31 AT5G11630 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G17310.1); Has 90 Blast
hits to 90 proteins in 10 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.75 0.29 -0.32
32 AT1G70580 alanine-2-oxoglutarate aminotransferase 2 alanine-2-oxoglutarate
aminotransferase 2,
GLUTAMATE:GLYOXYLATE
AMINOTRANSFERASE 2		 -0.75 0.33 -0.31
33 AT1G52160 tRNAse Z3 tRNAse Z3 0.75 0.34 -0.34
34 AT5G18630 alpha/beta-Hydrolases superfamily protein -0.75 0.32 -0.31
35 AT5G37930 Protein with RING/U-box and TRAF-like domains -0.75 0.32 -0.32
36 AT4G02120 CTP synthase family protein -0.74 0.3 -0.33
37 AT2G25590 Plant Tudor-like protein -0.74 0.32 -0.32
38 AT5G01670 NAD(P)-linked oxidoreductase superfamily protein -0.74 0.31 -0.33
39 AT2G39000 Acyl-CoA N-acyltransferases (NAT) superfamily protein -0.74 0.31 -0.34
40 AT4G32320 ascorbate peroxidase 6 ascorbate peroxidase 6 -0.74 0.31 -0.3
41 AT4G00740 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 QUASIMODO 3 0.74 0.32 -0.31
42 AT3G16230 Predicted eukaryotic LigT -0.74 0.32 -0.31
43 AT3G58170 BET1P/SFT1P-like protein 14A ATBET11, ARABIDOPSIS THALIANA
BET1P/SFT1P-LIKE PROTEIN 14A,
BET11, BET1P/SFT1P-like protein
14A		 -0.74 0.33 -0.34
44 AT4G36680 Tetratricopeptide repeat (TPR)-like superfamily protein 0.73 0.32 -0.31
45 AT1G08410 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.73 0.28 -0.33
46 AT5G65760 Serine carboxypeptidase S28 family protein -0.73 0.31 -0.33
47 AT3G60810 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF1499 (InterPro:IPR010865); Has 444
Blast hits to 444 proteins in 143 species: Archae - 0;
Bacteria - 268; Metazoa - 0; Fungi - 0; Plants - 51;
Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).		 -0.73 0.31 -0.32
48 AT3G13160 Tetratricopeptide repeat (TPR)-like superfamily protein 0.73 0.3 -0.32
49 AT1G53200 unknown protein; Has 21 Blast hits to 21 proteins in 9
species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0;
Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.73 0.29 -0.31
50 AT1G72730 DEA(D/H)-box RNA helicase family protein 0.73 0.32 -0.31
51 AT5G57120 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: nucleolus;
EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: LisH
dimerisation motif (InterPro:IPR006594), SRP40, C-terminal
(InterPro:IPR007718); Has 101969 Blast hits to 55488
proteins in 2506 species: Archae - 424; Bacteria - 13843;
Metazoa - 37674; Fungi - 9726; Plants - 4941; Viruses -
569; Other Eukaryotes - 34792 (source: NCBI BLink).		 0.73 0.33 -0.3
52 AT2G03670 cell division cycle 48B cell division cycle 48B 0.72 0.32 -0.31
53 AT1G31170 sulfiredoxin SULFIREDOXIN, sulfiredoxin -0.72 0.32 -0.33
54 AT3G15000 cobalt ion binding 0.72 0.31 -0.31
55 AT5G37680 ADP-ribosylation factor-like A1A ADP-ribosylation factor-like A1A,
ADP-ribosylation factor-like A1A		 -0.72 0.33 -0.31
56 AT5G11350 DNAse I-like superfamily protein -0.71 0.31 -0.3
57 AT4G36020 cold shock domain protein 1 cold shock domain protein 1 0.71 0.3 -0.31
58 AT1G62040 Ubiquitin-like superfamily protein autophagy 8c -0.71 0.34 -0.3
59 AT1G30260 BEST Arabidopsis thaliana protein match is:
Galactosyltransferase family protein (TAIR:AT4G21060.1);
Has 30 Blast hits to 30 proteins in 8 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.71 0.31 -0.31
60 AT4G38150 Pentatricopeptide repeat (PPR) superfamily protein 0.71 0.31 -0.32
61 AT2G06005 FRIGIDA interacting protein 1 FRIGIDA interacting protein 1 -0.7 0.33 -0.28
62 AT3G60340 alpha/beta-Hydrolases superfamily protein -0.7 0.3 -0.33
63 AT5G56180 actin-related protein 8 ARP8, actin-related protein 8,
actin-related protein 8		 -0.7 0.32 -0.31
64 AT4G29070 Phospholipase A2 family protein -0.69 0.31 -0.3
65 AT4G18020 CheY-like two-component responsive regulator family protein APRR2, PSEUDO-RESPONSE REGULATOR 2 -0.69 0.32 -0.32
66 AT1G04350 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.69 0.33 -0.32
67 AT3G44280 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G22280.1); Has 82 Blast hits to 82 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.69 0.32 -0.32
68 AT3G19900 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3067 (InterPro:IPR021420);
Has 276 Blast hits to 276 proteins in 83 species: Archae -
0; Bacteria - 112; Metazoa - 0; Fungi - 2; Plants - 59;
Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).		 -0.69 0.3 -0.33
69 AT3G63520 carotenoid cleavage dioxygenase 1 CAROTENOID CLEAVAGE DIOXYGENASE 1,
ATNCED1, carotenoid cleavage
dioxygenase 1, NCED1		 -0.69 0.32 -0.3
70 AT5G63080 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.69 0.33 -0.32
71 AT5G37670 HSP20-like chaperones superfamily protein -0.69 0.31 -0.33
72 AT1G77930 Chaperone DnaJ-domain superfamily protein -0.68 0.32 -0.31
73 AT5G18850 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to
1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 -0.68 0.32 -0.31
74 AT4G30630 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G57910.1); Has 33 Blast hits
to 33 proteins in 10 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.67 0.31 -0.33
75 AT1G52590 Putative thiol-disulphide oxidoreductase DCC -0.67 0.34 -0.33
76 AT1G16730 unknown protein 6 unknown protein 6 -0.67 0.3 -0.31
77 AT3G13672 TRAF-like superfamily protein -0.67 0.32 -0.32
78 AT2G34840 Coatomer epsilon subunit -0.66 0.31 -0.32
79 AT3G44950 glycine-rich protein -0.66 0.35 -0.3
80 AT3G59300 Pentatricopeptide repeat (PPR) superfamily protein -0.66 0.33 -0.32
81 AT1G78200 Protein phosphatase 2C family protein -0.66 0.31 -0.28
82 AT2G45740 peroxin 11D peroxin 11D -0.66 0.32 -0.3
83 AT5G03770 KDO transferase A AtKdtA, KDO transferase A -0.66 0.32 -0.32
84 AT3G43420 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.66 0.32 -0.31
85 AT5G15860 prenylcysteine methylesterase prenylcysteine methylesterase,
Isoprenylcysteine methylesterase,
prenylcysteine methylesterase		 -0.66 0.32 -0.33
86 AT4G29220 phosphofructokinase 1 phosphofructokinase 1 -0.66 0.34 -0.31
87 AT3G08840 D-alanine--D-alanine ligase family -0.65 0.32 -0.3
88 AT5G49970 pyridoxin (pyrodoxamine) 5'-phosphate oxidase pyridoxin (pyrodoxamine)
5'-phosphate oxidase, HOMOLOG OF
YEAST PYRIDOXINE AUXOTROPHY 3,
pyridoxin (pyrodoxamine)
5'-phosphate oxidase		 -0.65 0.32 -0.32
89 AT1G33780 Protein of unknown function (DUF179) -0.65 0.33 -0.33
90 AT5G18100 copper/zinc superoxide dismutase 3 copper/zinc superoxide dismutase 3 -0.64 0.32 -0.3
91 AT4G09600 GAST1 protein homolog 3 GAST1 protein homolog 3 -0.64 0.3 -0.31
92 AT2G35950 embryo sac development arrest 12 embryo sac development arrest 12 -0.64 0.31 -0.29
93 AT4G35710 Arabidopsis protein of unknown function (DUF241) -0.64 0.32 -0.31
94 AT4G26980 RNI-like superfamily protein -0.64 0.33 -0.32
95 AT1G03090 methylcrotonyl-CoA carboxylase alpha chain, mitochondrial /
3-methylcrotonyl-CoA carboxylase 1 (MCCA)		 MCCA -0.64 0.32 -0.31
96 AT4G10250 HSP20-like chaperones superfamily protein ATHSP22.0 -0.63 0.32 -0.32
97 AT1G02960 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G02965.1); Has 83 Blast hits
to 82 proteins in 37 species: Archae - 0; Bacteria - 2;
Metazoa - 20; Fungi - 7; Plants - 29; Viruses - 0; Other
Eukaryotes - 25 (source: NCBI BLink).		 -0.63 0.32 -0.31
98 AT4G00750 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.63 0.31 -0.33
99 AT1G68660 Ribosomal protein L12/ ATP-dependent Clp protease adaptor
protein ClpS family protein		 -0.63 0.32 -0.3
100 AT5G66670 Protein of unknown function (DUF677) -0.63 0.32 -0.32
101 AT3G52880 monodehydroascorbate reductase 1 monodehydroascorbate reductase 1,
monodehydroascorbate reductase 1		 -0.63 0.32 -0.3