AT3G04340 : embryo defective 2458
Query Information
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AGICode AT3G04340
Description FtsH extracellular protease family
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G04340 FtsH extracellular protease family embryo defective 2458 1 0.31 -0.31
2 AT3G48110 glycine-tRNA ligases EDD, EMBRYO-DEFECTIVE-DEVELOPMENT
1		 0.92 0.34 -0.32
3 AT3G23070 CRM family member 3A ATCFM3A, CRM family member 3A 0.91 0.31 -0.33
4 AT3G18110 Pentatricopeptide repeat (PPR) superfamily protein embryo defective 1270 0.88 0.31 -0.31
5 AT2G47220 DOMAIN OF UNKNOWN FUNCTION 724 5 DOMAIN OF UNKNOWN FUNCTION 724 5,
DOMAIN OF UNKNOWN FUNCTION 724 5		 0.88 0.31 -0.33
6 AT1G12800 Nucleic acid-binding, OB-fold-like protein 0.88 0.31 -0.31
7 AT5G49030 tRNA synthetase class I (I, L, M and V) family protein ovule abortion 2 0.88 0.3 -0.33
8 AT5G64580 AAA-type ATPase family protein EMBRYO DEFECTIVE 3144 0.88 0.32 -0.31
9 AT1G71720 Nucleic acid-binding proteins superfamily PIGMENT DEFECTIVE 338 0.88 0.31 -0.31
10 AT2G34640 plastid transcriptionally active 12 HEMERA, plastid transcriptionally
active 12		 0.87 0.32 -0.33
11 AT3G48500 Nucleic acid-binding, OB-fold-like protein PIGMENT DEFECTIVE 312, PLASTID
TRANSCRIPTIONALLY ACTIVE 10		 0.87 0.3 -0.35
12 AT1G50450 Saccharopine dehydrogenase 0.86 0.32 -0.33
13 AT2G31530 SecY protein transport family protein EMBRYO DEFECTIVE 2289, SECY
HOMOLOG 2		 0.85 0.32 -0.32
14 AT4G34830 Pentatricopeptide repeat (PPR) superfamily protein MATURATION OF RBCL 1, PIGMENT
DEFECTIVE 346		 0.85 0.3 -0.33
15 AT1G79560 FTSH protease 12 EMBRYO DEFECTIVE 1047, EMBRYO
DEFECTIVE 156, EMBRYO DEFECTIVE
36, FTSH protease 12		 0.85 0.31 -0.32
16 AT1G69200 fructokinase-like 2 fructokinase-like 2 0.85 0.32 -0.3
17 AT5G63420 RNA-metabolising metallo-beta-lactamase family protein embryo defective 2746 0.84 0.31 -0.32
18 AT3G51870 Mitochondrial substrate carrier family protein 0.84 0.33 -0.32
19 AT5G18570 GTP1/OBG family protein ATOBGC, OBG-like protein,
chloroplastic SAR1, EMBRYO
DEFECTIVE 269, EMBRYO DEFECTIVE
3138		 0.84 0.32 -0.31
20 AT5G08650 Small GTP-binding protein 0.84 0.31 -0.32
21 AT3G12080 GTP-binding family protein embryo defective 2738 0.83 0.31 -0.33
22 AT3G18390 CRS1 / YhbY (CRM) domain-containing protein embryo defective 1865 0.83 0.3 -0.32
23 AT1G10910 Pentatricopeptide repeat (PPR) superfamily protein EMBRYO DEFECTIVE 3103 0.83 0.31 -0.3
24 AT5G63420 RNA-metabolising metallo-beta-lactamase family protein embryo defective 2746 0.83 0.3 -0.31
25 AT1G30610 pentatricopeptide (PPR) repeat-containing protein EMBRYO DEFECTIVE 2279, EMBRYO
DEFECTIVE 88		 0.83 0.3 -0.3
26 AT5G42765 INVOLVED IN: biological_process unknown; LOCATED IN:
thylakoid, chloroplast thylakoid membrane, chloroplast;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: Twin-arginine
translocation pathway, signal sequence
(InterPro:IPR006311); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 0.82 0.31 -0.32
27 AT2G04270 RNAse E/G-like RNAse E/G-like 0.82 0.33 -0.33
28 AT3G26744 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 A. THALIANA INDUCER OF CBP
EXPRESSION 1, INDUCER OF CBF
EXPRESSION 1, SCREAM		 0.82 0.32 -0.33
29 AT5G16715 ATP binding;valine-tRNA ligases;aminoacyl-tRNA
ligases;nucleotide binding;ATP binding;aminoacyl-tRNA
ligases		 embryo defective 2247 0.82 0.33 -0.31
30 AT5G10470 kinesin like protein for actin based chloroplast movement 1 kinesin like protein for actin
based chloroplast movement 1,
KINESIN CDKA;1 ASSOCIATED 1		 0.81 0.3 -0.32
31 AT3G43610 Spc97 / Spc98 family of spindle pole body (SBP) component 0.81 0.32 -0.31
32 AT4G05590 CONTAINS InterPro DOMAIN/s: Uncharacterised protein family
UPF0041 (InterPro:IPR005336); BEST Arabidopsis thaliana
protein match is: Uncharacterised protein family (UPF0041)
(TAIR:AT4G22310.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 -0.81 0.3 -0.31
33 AT2G13440 glucose-inhibited division family A protein 0.81 0.31 -0.31
34 AT5G04810 pentatricopeptide (PPR) repeat-containing protein 0.81 0.31 -0.31
35 AT3G10840 alpha/beta-Hydrolases superfamily protein 0.8 0.32 -0.32
36 AT5G04140 glutamate synthase 1 FERREDOXIN-DEPENDENT GLUTAMATE
SYNTHASE, FERREDOXIN-DEPENDENT
GLUTAMATE SYNTHASE 1, glutamate
synthase 1, GLUS		 0.8 0.3 -0.33
37 AT5G57590 adenosylmethionine-8-amino-7-oxononanoate transaminases biotin auxotroph 1 0.8 0.32 -0.33
38 AT3G16290 AAA-type ATPase family protein embryo defective 2083 0.8 0.32 -0.31
39 AT1G80030 Molecular chaperone Hsp40/DnaJ family protein 0.8 0.32 -0.31
40 AT1G51110 Plastid-lipid associated protein PAP / fibrillin family
protein		 0.8 0.31 -0.3
41 AT2G39560 Putative membrane lipoprotein 0.79 0.33 -0.3
42 AT1G01320 Tetratricopeptide repeat (TPR)-like superfamily protein 0.79 0.31 -0.31
43 AT1G20870 HSP20-like chaperones superfamily protein 0.79 0.34 -0.32
44 AT5G20130 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.79 0.31 -0.31
45 AT3G24560 Adenine nucleotide alpha hydrolases-like superfamily
protein		 RASPBERRY 3 0.78 0.32 -0.33
46 AT5G02250 Ribonuclease II/R family protein ARABIDOPSIS THALIANA MITOCHONDRIAL
RNASE II, EMBRYO DEFECTIVE 2730,
ribonucleotide reductase 1		 0.78 0.36 -0.34
47 AT1G42550 plastid movement impaired1 PLASTID MOVEMENT IMPAIRED1 0.78 0.3 -0.31
48 AT3G16260 tRNAse Z4 tRNAse Z4 0.78 0.3 -0.33
49 AT4G01800 Albino or Glassy Yellow 1 Albino or Glassy Yellow 1,
Arabidopsis thaliana chloroplast
SecA, SECA1		 0.78 0.31 -0.32
50 AT2G48120 pale cress protein (PAC) PALE CRESS 0.78 0.34 -0.31
51 AT1G10850 Leucine-rich repeat protein kinase family protein 0.77 0.33 -0.33
52 AT5G08610 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 PIGMENT DEFECTIVE 340 0.77 0.32 -0.32
53 AT1G75240 homeobox protein 33 homeobox protein 33, homeobox
protein 33, zinc-finger
homeodomain 5		 0.77 0.32 -0.33
54 AT4G38780 Pre-mRNA-processing-splicing factor 0.77 0.32 -0.3
55 AT1G54350 ABC transporter family protein ATP-binding cassette D2 0.77 0.33 -0.32
56 AT2G24200 Cytosol aminopeptidase family protein -0.77 0.32 -0.31
57 AT5G19210 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.77 0.31 -0.3
58 AT3G61080 Protein kinase superfamily protein 0.77 0.32 -0.31
59 AT4G18750 Pentatricopeptide repeat (PPR) superfamily protein DEFECTIVELY ORGANIZED TRIBUTARIES
4		 0.77 0.32 -0.32
60 AT1G12330 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 12 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G12900.1); Has 249 Blast hits to 249 proteins in
27 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi -
14; Plants - 217; Viruses - 0; Other Eukaryotes - 11
(source: NCBI BLink).		 0.77 0.33 -0.3
61 AT5G14740 carbonic anhydrase 2 BETA CARBONIC ANHYDRASE 2,
CARBONIC ANHYDRASE 18, carbonic
anhydrase 2		 0.77 0.33 -0.32
62 AT1G71810 Protein kinase superfamily protein 0.77 0.32 -0.31
63 AT4G37870 phosphoenolpyruvate carboxykinase 1 phosphoenolpyruvate carboxykinase
1, PHOSPHOENOLPYRUVATE
CARBOXYKINASE		 -0.75 0.33 -0.32
64 AT4G18580 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.74 0.32 -0.31
65 AT1G09740 Adenine nucleotide alpha hydrolases-like superfamily
protein		 -0.73 0.32 -0.32
66 AT2G43060 ILI1 binding bHLH 1 ILI1 binding bHLH 1 -0.73 0.32 -0.31
67 AT5G59140 BTB/POZ domain-containing protein -0.72 0.31 -0.31
68 AT3G61980 serine protease inhibitor, Kazal-type family protein -0.72 0.32 -0.33
69 AT5G54500 flavodoxin-like quinone reductase 1 flavodoxin-like quinone reductase
1		 -0.72 0.33 -0.32
70 AT3G62580 Late embryogenesis abundant protein (LEA) family protein -0.7 0.31 -0.32
71 AT2G22570 nicotinamidase 1 A. THALIANA NICOTINAMIDASE 1,
nicotinamidase 1		 -0.7 0.32 -0.29
72 AT5G16050 general regulatory factor 5 GF14 UPSILON, general regulatory
factor 5		 -0.7 0.32 -0.32
73 AT4G35110 Arabidopsis phospholipase-like protein (PEARLI 4) family -0.7 0.33 -0.35
74 AT4G31500 cytochrome P450, family 83, subfamily B, polypeptide 1 ALTERED TRYPTOPHAN REGULATION 4,
cytochrome P450, family 83,
subfamily B, polypeptide 1, RED
ELONGATED 1, RUNT 1, SUPERROOT 2		 -0.69 0.29 -0.34
75 AT2G01650 plant UBX domain-containing protein 2 plant UBX domain-containing
protein 2		 -0.69 0.32 -0.3
76 AT3G46440 UDP-XYL synthase 5 UDP-XYL synthase 5 -0.69 0.3 -0.32
77 AT3G54640 tryptophan synthase alpha chain TRYPTOPHAN-REQUIRING 3, tryptophan
synthase alpha chain		 -0.69 0.3 -0.32
78 AT1G71190 senescence associated gene 18 senescence associated gene 18 -0.69 0.32 -0.31
79 AT5G67310 cytochrome P450, family 81, subfamily G, polypeptide 1 cytochrome P450, family 81,
subfamily G, polypeptide 1		 -0.69 0.31 -0.3
80 AT3G23570 alpha/beta-Hydrolases superfamily protein -0.69 0.33 -0.33
81 AT3G59760 O-acetylserine (thiol) lyase isoform C ARABIDOPSIS THALIANA
CYSTEINSYNTHASE-C, O-acetylserine
(thiol) lyase isoform C		 -0.69 0.3 -0.32
82 AT2G29960 cyclophilin 5 ARABIDOPSIS THALIANA CYCLOPHILIN
5, CYCLOPHILIN 19-4, cyclophilin 5		 -0.69 0.29 -0.32
83 AT1G26550 FKBP-like peptidyl-prolyl cis-trans isomerase family
protein		 -0.69 0.34 -0.31
84 AT4G25900 Galactose mutarotase-like superfamily protein -0.68 0.31 -0.33
85 AT1G01730 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; Has 42 Blast hits to 42 proteins
in 17 species: Archae - 0; Bacteria - 2; Metazoa - 5; Fungi
- 1; Plants - 34; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 -0.68 0.34 -0.3
86 AT3G17940 Galactose mutarotase-like superfamily protein -0.68 0.31 -0.3
87 AT2G34470 urease accessory protein G PSKF109, urease accessory protein
G		 -0.68 0.31 -0.31
88 AT1G54990 alpha/beta-Hydrolases superfamily protein AUXIN RESISTANT 4, REDUCED ROOT
GRAVITROPISM, REDUCED ROOT
GRAVITROPISM 1		 -0.68 0.34 -0.3
89 AT3G04060 NAC domain containing protein 46 NAC domain containing protein 46,
NAC domain containing protein 46		 -0.68 0.3 -0.32
90 AT1G07870 Protein kinase superfamily protein -0.67 0.33 -0.3
91 AT3G48680 gamma carbonic anhydrase-like 2 AtCAL2, gamma carbonic
anhydrase-like 2		 -0.67 0.32 -0.33
92 AT2G25280 CONTAINS InterPro DOMAIN/s: UPF0103/Mediator of
ErbB2-driven cell motility (Memo), related
(InterPro:IPR002737); Has 1074 Blast hits to 1072 proteins
in 474 species: Archae - 213; Bacteria - 366; Metazoa -
159; Fungi - 135; Plants - 54; Viruses - 0; Other
Eukaryotes - 147 (source: NCBI BLink).		 -0.67 0.31 -0.34
93 AT1G11020 RING/FYVE/PHD zinc finger superfamily protein -0.67 0.29 -0.32
94 AT2G47520 Integrase-type DNA-binding superfamily protein Arabidopsis thaliana ethylene
response factor 71, ethylene
response factor 71, HYPOXIA
RESPONSIVE ERF (ETHYLENE RESPONSE
FACTOR) 2		 -0.67 0.33 -0.32
95 AT5G54140 IAA-leucine-resistant (ILR1)-like 3 IAA-leucine-resistant (ILR1)-like
3		 -0.67 0.33 -0.32
96 AT5G11970 Protein of unknown function (DUF3511) -0.67 0.32 -0.3
97 AT1G79590 syntaxin of plants 52 ATSYP52, syntaxin of plants 52 -0.67 0.3 -0.32
98 AT2G46140 Late embryogenesis abundant protein -0.67 0.33 -0.29
99 AT1G14080 fucosyltransferase 6 ATFUT6, fucosyltransferase 6 -0.66 0.35 -0.3
100 AT3G17420 glyoxysomal protein kinase 1 glyoxysomal protein kinase 1 -0.66 0.31 -0.33
101 AT1G20270 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.66 0.31 -0.31
102 AT1G25280 tubby like protein 10 tubby like protein 10, tubby like
protein 10		 -0.66 0.32 -0.34
103 AT1G28680 HXXXD-type acyl-transferase family protein -0.65 0.29 -0.3
104 AT1G13280 allene oxide cyclase 4 allene oxide cyclase 4 -0.65 0.32 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
105 C0133 Kaempferol-3,7-O-α-dirhamnopyranoside Kaempferol-3,7-O-α-L-dirhamnopyranoside Kaempferol-3-rhamnoside-7-rhamnoside kaempferol glucoside biosynthesis (Arabidopsis) 0.9 0.46 -0.45 C0133