AT3G07950 : -
Query Information
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AGICode AT3G07950
Description rhomboid protein-related
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G07950 rhomboid protein-related 1 0.31 -0.35
2 AT5G44020 HAD superfamily, subfamily IIIB acid phosphatase 0.83 0.34 -0.31
3 AT5G55630 Outward rectifying potassium channel protein ATKCO1, TANDEM PORE K+ CHANNEL 1,
CA2+ ACTIVATED OUTWARD RECTIFYING
K+ CHANNEL 1, TWO PORE K CHANNEL,
TWO PORE K CHANNEL 1		 0.82 0.31 -0.3
4 AT2G18440 GUT15 (GENE WITH UNSTABLE TRANSCRIPT 15); other RNA GENE WITH UNSTABLE TRANSCRIPT 15 -0.81 0.3 -0.33
5 AT1G11680 CYTOCHROME P450 51G1 CYTOCHROME P450 51, CYTOCHROME
P450 51A2, CYTOCHROME P450 51G1,
embryo defective 1738		 0.8 0.33 -0.29
6 AT2G43100 isopropylmalate isomerase 2 ATLEUD1, isopropylmalate isomerase
2		 0.79 0.33 -0.34
7 AT5G15350 early nodulin-like protein 17 AtENODL17, early nodulin-like
protein 17		 0.78 0.32 -0.35
8 AT1G75960 AMP-dependent synthetase and ligase family protein 0.78 0.33 -0.31
9 AT2G30060 Pleckstrin homology (PH) domain superfamily protein 0.78 0.3 -0.33
10 AT5G56280 COP9 signalosome subunit 6A COP9 signalosome subunit 6A 0.78 0.32 -0.32
11 AT3G16940 calmodulin binding;transcription regulators -0.77 0.31 -0.31
12 AT1G07140 Pleckstrin homology (PH) domain superfamily protein SIRANBP 0.77 0.31 -0.32
13 AT4G34960 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family
protein		 0.77 0.35 -0.31
14 AT5G66410 phosducin-like protein 3 homolog phosducin-like protein 3 homolog 0.77 0.31 -0.32
15 AT3G43810 calmodulin 7 calmodulin 7 0.77 0.3 -0.33
16 AT4G17890 ARF-GAP domain 8 ARF-GAP domain 8 0.76 0.31 -0.32
17 AT3G09820 adenosine kinase 1 adenosine kinase 1, ATADK1 0.76 0.31 -0.32
18 AT2G33845 Nucleic acid-binding, OB-fold-like protein 0.76 0.34 -0.31
19 AT5G56940 Ribosomal protein S16 family protein 0.75 0.31 -0.34
20 AT5G59160 type one serine/threonine protein phosphatase 2 PROTOPORPHYRINOGEN OXIDASE, type
one serine/threonine protein
phosphatase 2		 0.75 0.32 -0.31
21 AT2G34050 INVOLVED IN: protein complex assembly; LOCATED IN:
mitochondrion, chloroplast; EXPRESSED IN: 19 plant
structures; EXPRESSED DURING: 9 growth stages; CONTAINS
InterPro DOMAIN/s: ATP11 (InterPro:IPR010591); Has 304
Blast hits to 304 proteins in 167 species: Archae - 0;
Bacteria - 0; Metazoa - 101; Fungi - 112; Plants - 39;
Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).		 0.75 0.32 -0.31
22 AT5G64030 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.75 0.32 -0.34
23 AT1G74090 desulfo-glucosinolate sulfotransferase 18 DESULFO-GLUCOSINOLATE
SULFOTRANSFERASE 18, ARABIDOPSIS
SULFOTRANSFERASE 5B,
desulfo-glucosinolate
sulfotransferase 18		 0.74 0.31 -0.31
24 AT5G11340 Acyl-CoA N-acyltransferases (NAT) superfamily protein 0.74 0.32 -0.31
25 AT2G19760 profilin 1 PROFILIN 1, profilin 1 0.74 0.3 -0.32
26 AT5G46790 PYR1-like 1 PYR1-like 1, regulatory components
of ABA receptor 12		 0.73 0.31 -0.33
27 AT1G76550 Phosphofructokinase family protein 0.73 0.33 -0.34
28 AT3G14440 nine-cis-epoxycarotenoid dioxygenase 3 ATNCED3, nine-cis-epoxycarotenoid
dioxygenase 3, SUGAR INSENSITIVE
7, SALT TOLERANT 1		 -0.73 0.31 -0.31
29 AT2G47320 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family
protein		 0.73 0.3 -0.31
30 AT1G67310 Calmodulin-binding transcription activator protein with
CG-1 and Ankyrin domains		 -0.73 0.33 -0.31
31 AT1G12880 nudix hydrolase homolog 12 nudix hydrolase homolog 12, nudix
hydrolase homolog 12		 -0.73 0.35 -0.35
32 AT3G61140 26S proteasome, regulatory subunit Rpn7;Proteasome
component (PCI) domain		 ARABIDOPSIS THALIANA FUSCA 6,
SHAGGY-LIKE KINASE 31,
CONSTITUTIVE PHOTOMORPHOGENIC 11,
COP9 SIGNALOSOME SUBUNIT 1, EMBRYO
DEFECTIVE 78, FUSCA 6, SHAGGY-LIKE
KINASE 31		 0.73 0.32 -0.31
33 AT5G17850 Sodium/calcium exchanger family protein -0.73 0.32 -0.33
34 AT1G14210 Ribonuclease T2 family protein 0.73 0.32 -0.32
35 AT3G58990 isopropylmalate isomerase 1 isopropylmalate isomerase 1 0.72 0.31 -0.33
36 AT3G02350 galacturonosyltransferase 9 galacturonosyltransferase 9 0.72 0.35 -0.32
37 AT3G14850 TRICHOME BIREFRINGENCE-LIKE 41 TRICHOME BIREFRINGENCE-LIKE 41 0.72 0.33 -0.32
38 AT4G00710 BR-signaling kinase 3 BR-signaling kinase 3 0.72 0.33 -0.32
39 AT1G03870 FASCICLIN-like arabinoogalactan 9 FASCICLIN-like arabinoogalactan 9 0.72 0.31 -0.31
40 AT3G25540 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing
protein		 LONGEVITY ASSURANCE GENE 1 0.72 0.32 -0.29
41 AT3G48750 cell division control 2 cell division control 2, CDC2A,
CDC2AAT, CDK2, CDKA1, CDKA;1		 0.71 0.32 -0.32
42 AT4G34490 cyclase associated protein 1 cyclase associated protein 1, CAP
1, cyclase associated protein 1		 0.71 0.32 -0.31
43 AT3G20300 Protein of unknown function (DUF3537) -0.71 0.31 -0.33
44 AT2G43140 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 0.7 0.32 -0.31
45 AT3G50380 Protein of unknown function (DUF1162) -0.7 0.31 -0.29
46 AT2G31110 Plant protein of unknown function (DUF828) TRICHOME BIREFRINGENCE-LIKE 40 0.7 0.3 -0.32
47 AT1G22330 RNA-binding (RRM/RBD/RNP motifs) family protein 0.7 0.32 -0.31
48 AT4G32840 phosphofructokinase 6 phosphofructokinase 6 0.7 0.32 -0.31
49 AT2G31790 UDP-Glycosyltransferase superfamily protein 0.7 0.3 -0.32
50 AT2G26680 CONTAINS InterPro DOMAIN/s: Methyltransferase FkbM
(InterPro:IPR006342); Has 1073 Blast hits to 1073 proteins
in 243 species: Archae - 45; Bacteria - 509; Metazoa - 0;
Fungi - 4; Plants - 60; Viruses - 4; Other Eukaryotes - 451
(source: NCBI BLink).		 0.7 0.3 -0.32
51 AT3G51600 lipid transfer protein 5 lipid transfer protein 5 0.7 0.34 -0.31
52 AT3G18060 transducin family protein / WD-40 repeat family protein 0.7 0.3 -0.32
53 AT2G01450 MAP kinase 17 MAP kinase 17, MAP kinase 17 -0.69 0.33 -0.31
54 AT4G15690 Thioredoxin superfamily protein 0.69 0.31 -0.31
55 AT5G55100 SWAP (Suppressor-of-White-APricot)/surp domain-containing
protein		 -0.69 0.32 -0.32
56 AT5G11000 Plant protein of unknown function (DUF868) 0.69 0.31 -0.32
57 AT1G77350 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: Protein of unknown function KRTCAP2
(InterPro:IPR018614); Has 141 Blast hits to 141 proteins in
57 species: Archae - 0; Bacteria - 0; Metazoa - 96; Fungi -
0; Plants - 33; Viruses - 0; Other Eukaryotes - 12 (source:
NCBI BLink).		 0.69 0.32 -0.32
58 AT3G53110 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 LOW EXPRESSION OF OSMOTICALLY
RESPONSIVE GENES 4		 0.69 0.31 -0.33
59 AT2G17265 homoserine kinase DOWNY MILDEW RESISTANT 1,
homoserine kinase		 0.69 0.31 -0.31
60 AT3G22380 time for coffee TIME FOR COFFEE -0.69 0.29 -0.3
61 AT5G15770 glucose-6-phosphate acetyltransferase 1 glucose-6-phosphate
acetyltransferase 1,
glucose-6-phosphate
acetyltransferase 1		 0.69 0.33 -0.32
62 AT1G13320 protein phosphatase 2A subunit A3 protein phosphatase 2A subunit A3 0.69 0.3 -0.33
63 AT5G62090 SEUSS-like 2 SEUSS-like 2 -0.69 0.31 -0.32
64 AT5G08160 serine/threonine protein kinase 3 serine/threonine protein kinase 3,
serine/threonine protein kinase 3		 0.69 0.34 -0.31
65 AT3G01120 Pyridoxal phosphate (PLP)-dependent transferases
superfamily protein		 AtCGS1, A. thaliana cystathionine
gamma-synthetase 1, CYSTATHIONINE
GAMMA-SYNTHASE, CYSTATHIONINE
GAMMA-SYNTHASE 1, METHIONINE
OVERACCUMULATION 1		 0.69 0.35 -0.29
66 AT5G60260 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.69 0.32 -0.3
67 AT1G04690 potassium channel beta subunit 1 potassium channel beta subunit 1,
KV-BETA1		 0.69 0.33 -0.32
68 AT1G22330 RNA-binding (RRM/RBD/RNP motifs) family protein 0.68 0.3 -0.32
69 AT5G66680 dolichyl-diphosphooligosaccharide-protein
glycosyltransferase 48kDa subunit family protein		 DEFECTIVE GLYCOSYLATION 0.68 0.31 -0.32
70 AT3G06060 NAD(P)-binding Rossmann-fold superfamily protein TSC10A 0.68 0.33 -0.32
71 AT1G69530 expansin A1 AT-EXP1, ATEXP1, expansin A1,
ATHEXP ALPHA 1.2, EXPANSIN 1,
expansin A1		 0.68 0.33 -0.32
72 AT4G15700 Thioredoxin superfamily protein 0.68 0.3 -0.31
73 AT3G09300 OSBP(oxysterol binding protein)-related protein 3B OSBP(oxysterol binding
protein)-related protein 3B		 0.68 0.32 -0.32
74 AT5G48760 Ribosomal protein L13 family protein 0.68 0.31 -0.33
75 AT1G77800 PHD finger family protein -0.67 0.32 -0.32
76 AT5G25560 CHY-type/CTCHY-type/RING-type Zinc finger protein -0.67 0.32 -0.33
77 AT2G24960 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G02210.2); Has 1453 Blast hits
to 509 proteins in 26 species: Archae - 0; Bacteria - 0;
Metazoa - 1; Fungi - 39; Plants - 1363; Viruses - 0; Other
Eukaryotes - 50 (source: NCBI BLink).		 -0.67 0.32 -0.31
78 AT1G53100 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein		 -0.67 0.3 -0.31
79 AT5G43930 Transducin family protein / WD-40 repeat family protein -0.66 0.3 -0.33
80 AT5G56790 Protein kinase superfamily protein -0.66 0.31 -0.33
81 AT2G33580 Protein kinase superfamily protein -0.66 0.34 -0.32
82 AT2G36390 starch branching enzyme 2.1 BRANCHING ENZYME 3, starch
branching enzyme 2.1		 -0.66 0.29 -0.31
83 AT1G17145 RING/U-box superfamily protein -0.65 0.3 -0.3
84 AT4G28260 unknown protein; Has 50 Blast hits to 42 proteins in 12
species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0;
Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.65 0.32 -0.34
85 AT4G37460 Tetratricopeptide repeat (TPR)-like superfamily protein SUPPRESSOR OF RPS4-RLD 1 -0.65 0.31 -0.31
86 AT2G43500 Plant regulator RWP-RK family protein -0.64 0.3 -0.31
87 AT4G36980 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Splicing factor, suppressor of white
apricot (InterPro:IPR019147); Has 7672 Blast hits to 5479
proteins in 321 species: Archae - 0; Bacteria - 89; Metazoa
- 5155; Fungi - 712; Plants - 341; Viruses - 39; Other
Eukaryotes - 1336 (source: NCBI BLink).		 -0.64 0.31 -0.3
88 AT3G57530 calcium-dependent protein kinase 32 ATCPK32, CDPK32, calcium-dependent
protein kinase 32		 -0.63 0.31 -0.3
89 AT1G14660 Na+/H+ exchanger 8 Na+/H+ exchanger 8, Na+/H+
exchanger 8, SODIUM HYDROGEN
EXCHANGER 8		 -0.63 0.3 -0.31
90 AT5G59670 Leucine-rich repeat protein kinase family protein -0.63 0.34 -0.32
91 AT5G01880 RING/U-box superfamily protein -0.63 0.32 -0.32
92 AT5G41580 RING/U-box superfamily protein -0.63 0.32 -0.32
93 AT5G18830 squamosa promoter binding protein-like 7 SQUAMOSA PROMOTER BINDING
PROTEIN-LIKE 7, squamosa promoter
binding protein-like 7		 -0.63 0.32 -0.29
94 AT1G60190 ARM repeat superfamily protein AtPUB19, plant U-box 19 -0.62 0.31 -0.31
95 AT4G08980 F-BOX WITH WD-40 2 F-BOX WITH WD-40 2 -0.62 0.3 -0.32
96 AT3G25990 Homeodomain-like superfamily protein -0.62 0.33 -0.29
97 AT4G12020 protein kinase family protein ATWRKY19, MITOGEN-ACTIVATED
PROTEIN KINASE KINASE KINASE 11,
MAPK/ERK KINASE KINASE 4, WRKY19		 -0.62 0.33 -0.31
98 AT4G18880 heat shock transcription factor A4A ARABIDOPSIS THALIANA HEAT SHOCK
TRANSCRIPTION FACTOR A4A, heat
shock transcription factor A4A		 -0.62 0.3 -0.34
99 AT5G37500 gated outwardly-rectifying K+ channel gated outwardly-rectifying K+
channel		 -0.61 0.3 -0.32
100 AT2G46180 golgin candidate 4 golgin candidate 4 -0.61 0.32 -0.31
101 AT1G20100 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G75860.1); Has 471 Blast hits
to 438 proteins in 92 species: Archae - 0; Bacteria - 14;
Metazoa - 217; Fungi - 43; Plants - 91; Viruses - 1; Other
Eukaryotes - 105 (source: NCBI BLink).		 -0.61 0.3 -0.3
102 AT5G58720 smr (Small MutS Related) domain-containing protein -0.61 0.3 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
103 C0111 Hexa-2-O-glycerol-β-galactopyranoside Hexa-2-O-gllycerol-β-D-galactopyranoside - - -0.79 0.46 -0.47
104 C0109 Guanine - Guanine guanine and guanosine salvage II,
guanosine nucleotides degradation II 		-0.78 0.43 -0.41 C0109
105 C0107 Glycine - Glycine 5-aminoimidazole ribonucleotide biosynthesis I,
gamma-glutamyl cycle,
folate polyglutamylation,
gamma-glutamyl cycle (plant pathway),
glutathione biosynthesis,
glutathione-mediated detoxification II,
folate transformations II,
indole glucosinolate breakdown (active in intact plant cell),
glycine cleavage complex,
camalexin biosynthesis,
thiamine biosynthesis II,
tRNA charging,
glycine biosynthesis,
glutathione degradation,
photorespiration 		-0.72 0.45 -0.48 C0107